Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g014740.3 Solanum lycopersicum HOM05D002685 ORTHO05D001487 4.4e-52 207.6 100 100.0
Sopen04g006850 Solanum pennellii HOM05D002685 ORTHO05D001487 4.4e-52 207.6 100 100.0
PGSC0003DMG400023607 Solanum tuberosum HOM05D002685 ORTHO05D001487 1.1e-50 203.0 100 97.0
CAN.G307.30 Capsicum annuum HOM05D002685 ORTHO05D001487 8.6e-48 193.4 100 91.0
Peaxi162Scf00442g00043 Petunia axillaris HOM05D002685 ORTHO05D001487 2.1e-46 188.7 100 89.0
Nitab4.5_0001109g0010 Nicotiana tabacum HOM05D002685 ORTHO05D001487 3.1e-45 184.9 99 89.9
Nitab4.5_0003785g0010 Nicotiana tabacum HOM05D002685 ORTHO05D001487 5.8e-44 180.6 100 88.0
MSTRG.16026 Avicennia marina HOM05D002685 ORTHO05D001487 1.9e-39 165.6 100 74.0
Migut.M01392 Erythranthe guttata HOM05D002685 ORTHO05D001487 2.5e-39 165.2 100 74.0
Oeu002766.1 Olea europaea HOM05D002685 ORTHO05D001487 1.2e-38 162.9 100 76.0
Cc09_g00900 Coffea canephora HOM05D002685 ORTHO05D001487 2.1e-38 162.2 100 74.0
SGA_v2.0_scaffold7G03758 Striga asiatica HOM05D002685 ORTHO05D001487 6.2e-38 160.6 98 71.4
CAN.G578.10 Capsicum annuum HOM05D003504 ORTHO05D001487 1.1e-37 159.8 87 85.1
SalBow8G4541 Salvia bowleyana HOM05D002685 ORTHO05D001487 6.8e-37 157.1 100 70.0
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 1.2e-36 156.4 100 74.0
Actinidia26861 Actinidia chinensis HOM05D002685 ORTHO05D001487 5.8e-36 154.1 99 72.7
CSS0012165 Camellia sinensis var. sinensis HOM05D002685 ORTHO05D001487 3.8e-35 151.4 106 70.8
DCAR_004886 Daucus carota HOM05D002685 ORTHO05D001487 5.4e-34 147.5 100 73.0
Lsat_1_v5_gn_4_62441 Lactuca sativa HOM05D002685 ORTHO05D001487 5.4e-34 147.5 99 67.7
TAR624G0212 Trochodendron aralioides HOM05D002685 ORTHO05D001487 5.4e-34 147.5 98 71.4
RhsimUnG0109500 Rhododendron simsii HOM05D002685 ORTHO05D001487 9.2e-34 146.7 100 71.0
Cfa000108 Carpinus fangiana HOM05D002685 ORTHO05D001487 1.6e-33 146.0 112 65.2
Nn1g07360 Nelumbo nucifera HOM05D002685 ORTHO05D001487 6.0e-33 144.1 97 69.1
Rhsim13G0146100 Rhododendron simsii HOM05D002685 ORTHO05D001487 6.0e-33 144.1 100 69.0
Haze_06918 Corylus avellana HOM05D002685 ORTHO05D001487 7.8e-33 143.7 112 64.3
Haze_06923 Corylus avellana HOM05D002685 ORTHO05D001487 7.8e-33 143.7 112 64.3
Hma1.2p1_0700F.1_g205790 Hydrangea macrophylla HOM05D002685 ORTHO05D001487 1.3e-32 142.9 100 70.0
CANSAT56G3281 Cannabis sativa HOM05D002685 ORTHO05D001487 1.7e-32 142.5 105 65.7
ClCG01G010270 Citrullus lanatus HOM05D002685 ORTHO05D001487 3.0e-32 141.7 100 70.0
Lj6g0003651 Lotus japonicus HOM05D002685 ORTHO05D001487 3.9e-32 141.4 98 70.4
MELO3C021680.2 Cucumis melo HOM05D002685 ORTHO05D001487 1.9e-31 139.0 100 69.0
CsaV3_1G017210 Cucumis sativus L. HOM05D002685 ORTHO05D001487 2.5e-31 138.7 100 69.0
QL05p033962 Quercus lobata HOM05D002685 ORTHO05D001487 3.3e-31 138.3 101 69.3
Psat1g176480 Pisum sativum HOM05D002685 ORTHO05D001487 5.6e-31 137.5 99 65.7
CiPaw.09G102100 Carya illinoinensis HOM05D002685 ORTHO05D001487 7.3e-31 137.1 113 59.3
QL05p069750 Quercus lobata HOM05D002685 ORTHO05D001487 7.3e-31 137.1 101 69.3
Gohir.D06G215950 Gossypium hirsutum HOM05D002685 ORTHO05D001487 2.8e-30 135.2 108 63.0
Gorai.010G250200 Gossypium raimondii HOM05D002685 ORTHO05D001487 2.8e-30 135.2 108 63.0
HanXRQChr16g0516641 Helianthus annuus HOM05D002685 ORTHO05D001487 2.8e-30 135.2 98 64.3
Medtr2g025690 Medicago truncatula HOM05D002685 ORTHO05D001487 4.8e-30 134.4 98 66.3
Atru.chr1.2459 Acer truncatum HOM05D002685 ORTHO05D001487 8.1e-30 133.7 98 64.3
Gohir.A06G205701 Gossypium hirsutum HOM05D002685 ORTHO05D001487 1.1e-29 133.3 108 62.0
Ciclev10018181m.g Citrus clementina HOM05D002685 ORTHO05D001487 4.0e-29 131.3 104 67.3
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 5.3e-29 131.0 98 68.4
Phvul.006G143400 Phaseolus vulgaris HOM05D002685 ORTHO05D001487 5.3e-29 131.0 99 64.6
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 9.0e-29 130.2 110 59.1
Prupe.4G011000 Prunus persica HOM05D002685 ORTHO05D001487 9.0e-29 130.2 103 62.1
FvH4_3g01021 Fragaria vesca HOM05D002685 ORTHO05D001487 1.2e-28 129.8 101 66.3
arahy.Tifrunner.gnm1.ann1.4JG1SZ Arachis hypogaea HOM05D002685 ORTHO05D001487 1.5e-28 129.4 105 59.0
arahy.Tifrunner.gnm1.ann1.J75SJQ Arachis hypogaea HOM05D002685 ORTHO05D001487 1.5e-28 129.4 105 59.0
Duzib235G0187 Durio zibethinus HOM05D002685 ORTHO05D001487 1.5e-28 129.4 109 59.6
VMungo0540G1760 Vigna mungo HOM05D002685 ORTHO05D001487 1.5e-28 129.4 99 63.6
TWI38G0374 Tripterygium wilfordii HOM05D002685 ORTHO05D001487 2.6e-28 128.6 112 59.8
Potri.016G014900 Populus trichocarpa HOM05D002685 ORTHO05D001487 3.4e-28 128.3 107 59.8
Glyma.15G114400 Glycine max HOM05D002685 ORTHO05D001487 4.4e-28 127.9 99 64.6
RcHm_v2.0_Chr5g0001561 Rosa chinensis HOM05D002685 ORTHO05D001487 5.8e-28 127.5 102 64.7
MD10G1331200 Malus domestica HOM05D002685 ORTHO05D001487 7.6e-28 127.1 103 58.3
Sabra16G0017000 Salix brachista HOM05D002685 ORTHO05D001487 9.9e-28 126.7 106 61.3
Sed0007957 Sechium edule HOM05D002685 ORTHO05D001487 9.9e-28 126.7 100 64.0
C08p15160 Brassica napus HOM05D002685 ORTHO05D001487 2.4e-26 122.1 108 56.5
BolC8t49146H Brassica oleracea HOM05D002685 ORTHO05D001487 2.4e-26 122.1 108 56.5
Manes.10G111700 Manihot esculenta HOM05D002685 ORTHO05D001487 2.4e-26 122.1 99 59.6
A08p33050 Brassica napus HOM05D002685 ORTHO05D001487 7.1e-26 120.6 108 55.6
BraA08t35225Z Brassica rapa HOM05D002685 ORTHO05D001487 7.1e-26 120.6 108 55.6
Ca_00720_v3 Cicer arietinum L. HOM05D002685 ORTHO05D001487 1.2e-25 119.8 96 61.5
Glyma.09G010100 Glycine max HOM05D002685 ORTHO05D001487 1.6e-25 119.4 94 62.8
Sp1g10730 Schrenkiella parvula HOM05D002685 ORTHO05D001487 2.1e-25 119.0 112 53.6
Thecc.06G232900 Theobroma cacao HOM05D002685 ORTHO05D001487 6.0e-25 117.5 107 57.0
AT1G12060 Arabidopsis thaliana HOM05D002685 ORTHO05D001487 3.0e-24 115.2 114 51.8
CARHR012420 Cardamine hirsuta HOM05D002685 ORTHO05D001487 3.0e-24 115.2 112 51.8
Thhalv10008770m.g Eutrema salsugineum HOM05D002685 ORTHO05D001487 3.9e-24 114.8 112 49.1
PGR004G1286 Punica granatum HOM05D002685 ORTHO05D001487 6.6e-24 114.0 103 55.3
AL1G23310 Arabidopsis lyrata HOM05D002685 ORTHO05D001487 8.7e-24 113.6 113 50.4
Carub.0001s1174 Capsella rubella HOM05D002685 ORTHO05D001487 8.7e-24 113.6 114 50.9
Cpa.g.sc75.118 Carica papaya HOM05D002685 ORTHO05D001487 8.7e-24 113.6 113 51.3
THA.LOC104823542 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 1.1e-23 113.2 107 55.1
Ah.09g234250 Amaranthus hybridus HOM05D002685 ORTHO05D001487 1.9e-23 112.5 102 54.9
PSO210G2053 Papaver somniferum HOM05D002685 ORTHO05D001487 1.9e-23 112.5 105 55.2
PSO764G0142 Papaver somniferum HOM05D002685 ORTHO05D001487 1.9e-23 112.5 105 55.2
AUR62021868 Chenopodium quinoa HOM05D002685 ORTHO05D001487 1.3e-22 109.8 100 58.0
Aa31LG1G2670 Aethionema arabicum HOM05D002685 ORTHO05D001487 2.8e-22 108.6 108 50.9
RcHm_v2.0_Chr7g0203061 Rosa chinensis HOM05D002685 ORTHO05D001487 9.0e-21 103.6 97 57.7
Aqoxy1G04102 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 1.5e-20 102.8 102 51.0
Dinv07400 Davidia involucrata HOM05D002685 ORTHO05D001487 9.9e-20 100.1 62 74.2
MBI16_g41625_MAGBIO Magnolia biondii HOM05D002685 ORTHO05D001487 8.4e-19 97.1 91 56.0
Eucgr.L00542 Eucalyptus grandis HOM05D002685 ORTHO05D001487 2.4e-18 95.5 101 54.5
PSO302G0162 Papaver somniferum HOM05D002685 ORTHO05D001487 2.4e-18 95.5 96 53.1
CAN.G151.23 Capsicum annuum HOM05D003504 ORTHO05D004006 7.1e-18 94.0 52 86.5
PSO210G1645 Papaver somniferum HOM05D002685 ORTHO05D001487 6.0e-17 90.9 96 52.1
MD07G1178100 Malus domestica HOM05D002685 ORTHO05D001487 7.9e-17 90.5 94 48.9
MD17G1215100 Malus domestica HOM05D002685 ORTHO05D001487 7.9e-17 90.5 94 48.9
unitig_32.g11048 Utricularia gibba HOM05D002685 ORTHO05D001487 3.9e-16 88.2 74 59.5
ECA240G3355 Erigeron canadensis HOM05D002685 ORTHO05D001487 1.1e-15 86.7 67 64.2
CAN.G103.4 Capsicum annuum HOM05D002685 ORTHO05D001487 4.3e-15 84.7 53 79.2
MD14G1100700 Malus domestica HOM05D002685 ORTHO05D001487 1.4e-13 79.7 89 49.4
RcHm_v2.0_Chr4g0386881 Rosa chinensis HOM05D002685 ORTHO05D001487 2.4e-13 79.0 75 57.3
MD17G1165100 Malus domestica HOM05D002685 ORTHO05D001487 2.0e-12 75.9 94 43.6
C08p40580 Brassica napus HOM05D002685 ORTHO05D001487 2.6e-12 75.5 72 54.2
BcaC07g41055 Brassica carinata HOM05D002685 ORTHO05D001487 3.4e-12 75.1 50 68.0
BcaC07g41059 Brassica carinata HOM05D002685 ORTHO05D001487 3.4e-12 75.1 50 68.0
Thhalv10027450m.g Eutrema salsugineum HOM05D002685 ORTHO05D001487 4.5e-12 74.7 85 42.4
RcHm_v2.0_Chr6g0263021 Rosa chinensis HOM05D002685 ORTHO05D001487 2.5e-10 68.9 75 52.0
BcaC02g07554 Brassica carinata HOM05D002685 ORTHO05D001487 2.1e-09 65.9 44 68.2
ATR1101G100 Amborella trichopoda HOM05D002685 ORTHO05D001487 2.7e-09 65.5 79 50.6
MD09G1110100 Malus domestica HOM05D002685 ORTHO05D001487 7.9e-09 63.9 94 42.6
HPP92_022804 Vanilla planifolia HOM05D002685 ORTHO05D001487 1.8e-08 62.8 46 67.4
Aqoxy3G01654 Aquilegia oxysepala HOM05D002685 ORTHO05D001487 1.1e-07 60.1 86 40.7
Thhalv10015816m.g Eutrema salsugineum HOM05D002685 ORTHO05D001487 1.9e-07 59.3 73 38.4
Os02g0719700 Oryza sativa ssp. japonica HOM05D002685 ORTHO05D001487 2.5e-07 58.9 42 66.7
Zm00001eb252920 Zea mays HOM05D002685 ORTHO05D001487 2.5e-07 58.9 43 65.1
THA.LOC104801613 Tarenaya hassleriana HOM05D002685 ORTHO05D001487 4.3e-07 58.2 43 60.5
Zm00001eb189410 Zea mays HOM05D002685 ORTHO05D001487 4.3e-07 58.2 42 66.7
Manes.13G007700 Manihot esculenta HOM05D002685 ORTHO05D001487 5.7e-07 57.8 43 60.5
Aa31LG7G9970 Aethionema arabicum HOM05D002685 ORTHO05D001487 7.4e-07 57.4 47 59.6
Lalb_Chr10g0096511 Lupinus albus HOM05D006269 ORTHO05D001487 1.3e-06 56.6 91 35.2
FvH4_7g15690 Fragaria vesca HOM05D006269 ORTHO05D001487 2.8e-06 55.5 50 54.0
FAN06G3724 Fragaria x ananassa HOM05D006269 ORTHO05D001487 2.8e-06 55.5 50 54.0
RcHm_v2.0_Chr6g0277501 Rosa chinensis HOM05D002685 ORTHO05D001487 2.8e-06 55.5 36 72.2
SHI04197 Sapria himalayana HOM05D002685 ORTHO05D001487 6.2e-06 54.3 77 33.8


User provided reference genes

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