Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 1.2e-288 995.7 484 100.0
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 8.5e-250 866.7 412 98.8
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 4.8e-245 850.9 412 97.3
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 1.5e-230 802.7 413 92.0
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 3.4e-222 775.0 449 83.1
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 2.4e-204 715.7 412 80.3
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.0e-203 712.6 412 79.1
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 3.9e-202 708.4 412 78.6
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 8.6e-202 707.2 412 79.1
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 9.5e-201 703.7 400 81.0
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 1.2e-198 696.8 412 77.4
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 1.5e-198 696.4 414 77.8
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 2.0e-198 696.0 412 78.2
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 2.6e-198 695.7 412 77.2
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 3.4e-198 695.3 412 78.4
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 1.7e-197 693.0 412 78.4
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 2.9e-197 692.2 412 77.4
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 2.9e-197 692.2 413 78.0
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 6.4e-197 691.0 412 77.4
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 8.3e-197 690.6 412 77.4
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 3.5e-195 685.3 412 77.4
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 6.0e-195 684.5 412 76.7
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 1.3e-194 683.3 412 74.5
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 2.3e-194 682.6 412 77.2
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 3.9e-194 681.8 412 76.9
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 6.6e-194 681.0 412 77.2
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 1.1e-193 680.2 412 75.5
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 1.5e-193 679.9 412 76.5
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 1.9e-193 679.5 412 75.7
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 1.9e-193 679.5 412 76.2
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 2.5e-193 679.1 418 77.0
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 4.3e-193 678.3 412 76.5
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 5.6e-193 677.9 452 71.9
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 7.3e-193 677.6 412 76.0
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 1.6e-192 676.4 413 77.2
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 2.8e-192 675.6 412 74.8
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 3.6e-192 675.2 412 75.7
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 4.7e-192 674.9 412 76.0
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 8.1e-192 674.1 439 72.0
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 1.4e-191 673.3 412 75.7
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 1.4e-191 673.3 412 74.3
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.3e-191 672.5 439 72.0
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 3.1e-191 672.2 412 75.5
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 4.0e-191 671.8 413 75.3
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 6.8e-191 671.0 412 75.5
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 8.9e-191 670.6 413 75.5
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 1.5e-190 669.8 412 75.2
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 2.0e-190 669.5 412 73.5
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 2.6e-190 669.1 412 75.0
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 3.4e-190 668.7 412 75.0
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 5.8e-190 667.9 413 74.6
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 7.5e-190 667.5 410 73.7
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 9.9e-190 667.2 412 74.8
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 9.9e-190 667.2 413 75.1
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 9.9e-190 667.2 412 74.0
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.3e-189 666.8 412 73.3
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 2.2e-189 666.0 413 74.8
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 4.9e-189 664.8 410 72.9
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 6.4e-189 664.5 412 74.5
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 8.3e-189 664.1 410 73.7
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 8.3e-189 664.1 411 73.0
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 8.3e-189 664.1 419 73.7
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 1.4e-188 663.3 412 73.3
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 1.4e-188 663.3 412 74.5
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 2.4e-188 662.5 410 73.4
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 2.1e-187 659.4 410 72.9
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 2.7e-187 659.1 409 73.1
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.7e-187 659.1 412 73.8
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 2.7e-187 659.1 412 73.8
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 4.6e-187 658.3 410 73.9
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 6.0e-187 657.9 416 73.8
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 7.8e-187 657.5 410 73.9
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 7.8e-187 657.5 423 73.8
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 1.3e-186 656.8 410 72.4
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.3e-186 656.8 412 73.5
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 6.6e-186 654.4 410 73.2
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 5.6e-185 651.4 410 72.0
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 7.3e-185 651.0 497 65.0
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 7.3e-185 651.0 408 75.0
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 2.8e-184 649.0 410 72.0
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 3.6e-184 648.7 410 71.0
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.7e-184 648.3 412 72.8
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 8.1e-184 647.5 410 72.2
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 3.1e-183 645.6 397 75.6
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 3.1e-183 645.6 412 72.8
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 6.8e-183 644.4 410 71.0
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 8.9e-183 644.0 410 70.5
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 1.2e-182 643.7 445 69.0
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 1.5e-182 643.3 402 72.9
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 2.6e-182 642.5 410 70.7
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 3.4e-182 642.1 402 72.9
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 3.4e-182 642.1 395 74.2
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 3.4e-182 642.1 428 69.6
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 4.4e-182 641.7 410 71.2
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 1.3e-181 640.2 412 72.3
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 2.2e-181 639.4 401 72.8
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 4.9e-181 638.3 401 72.6
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 8.4e-181 637.5 410 71.0
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 1.4e-180 636.7 429 69.5
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 1.7e-178 629.8 413 70.7
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 2.8e-176 622.5 399 72.9
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 9.0e-175 617.5 412 67.2
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 2.6e-174 615.9 426 69.7
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 2.9e-173 612.5 414 66.9
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 9.3e-172 607.4 450 65.8
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 1.9e-169 599.7 420 66.9
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 1.9e-169 599.7 412 69.4
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 3.4e-166 589.0 419 67.8
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 5.8e-166 588.2 401 69.8
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 2.4e-156 556.2 412 67.0
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 7.1e-156 554.7 411 61.8
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 8.7e-154 547.7 422 61.6
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 6.9e-151 538.1 410 62.7
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 2.9e-149 532.7 358 66.8
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 3.2e-148 529.3 366 68.9
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 1.2e-147 527.3 424 60.4
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 2.1e-147 526.6 294 80.3
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 1.8e-146 523.5 431 61.7
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 4.8e-144 515.4 412 63.3
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 5.9e-142 508.4 358 65.6
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 3.3e-137 492.7 420 55.5
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 4.4e-129 465.7 269 79.6
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 3.1e-119 433.0 468 47.9
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 1.6e-118 430.6 464 51.9
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 3.8e-117 426.0 460 51.5
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 9.4e-116 421.4 465 47.7
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 2.0e-105 387.1 415 48.9
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 7.1e-39 166.0 110 66.4
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 1.6e-27 128.3 97 62.9
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 1.8e-26 124.8 75 77.3
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 5.9e-25 119.8 89 62.9
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 5.9e-25 119.8 89 62.9
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 7.7e-25 119.4 110 51.8
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 5.7e-20 103.2 138 44.9
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 2.5e-15 87.8 55 69.1
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 4.2e-15 87.0 69 59.4
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 6.1e-14 83.2 66 60.6
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 3.9e-13 80.5 69 55.1
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 4.4e-12 77.0 64 57.8
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 3.1e-10 70.9 68 50.0
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 3.6e-06 57.4 121 30.6
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 3.6e-06 57.4 36 63.9
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 6.1e-06 56.6 121 32.2


User provided reference genes

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