Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 3.3e-65 251.5 123 100.0
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 9.5e-65 250.0 123 99.2
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 2.8e-64 248.4 123 98.4
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 5.2e-63 244.2 123 96.7
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.6e-62 241.9 122 95.9
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 5.8e-62 240.7 123 95.9
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 7.6e-62 240.4 123 95.1
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 2.2e-61 238.8 122 94.3
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 7.1e-60 233.8 123 94.3
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 1.5e-54 216.1 114 90.4
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 1.7e-53 212.6 115 87.0
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 3.8e-53 211.5 115 87.8
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 8.4e-53 210.3 114 89.5
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 4.2e-52 208.0 114 86.8
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 1.6e-51 206.1 115 87.8
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 3.5e-51 204.9 111 86.5
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 6.0e-51 204.1 111 86.5
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 1.0e-50 203.4 114 82.5
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 2.3e-50 202.2 111 85.6
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 3.9e-50 201.4 115 82.6
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 5.1e-50 201.1 115 85.2
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 8.7e-50 200.3 113 84.1
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 1.1e-49 199.9 113 83.2
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 1.1e-49 199.9 114 82.5
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.1e-49 199.9 114 81.6
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 1.1e-49 199.9 114 81.6
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 1.5e-49 199.5 112 83.0
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 1.5e-49 199.5 112 83.0
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 2.5e-49 198.7 111 84.7
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 4.3e-49 198.0 112 83.0
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 4.3e-49 198.0 116 81.9
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 4.3e-49 198.0 111 84.7
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 5.6e-49 197.6 112 81.2
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 7.3e-49 197.2 114 79.8
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 7.3e-49 197.2 114 81.6
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 7.3e-49 197.2 109 86.2
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 7.3e-49 197.2 115 80.9
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 9.6e-49 196.8 115 80.9
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 9.6e-49 196.8 117 77.8
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 9.6e-49 196.8 114 80.7
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 1.3e-48 196.4 113 82.3
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 1.6e-48 196.1 117 77.8
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 1.6e-48 196.1 111 82.0
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 3.6e-48 194.9 108 86.1
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 4.8e-48 194.5 117 76.1
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 4.8e-48 194.5 111 81.1
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 4.8e-48 194.5 112 82.1
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 4.8e-48 194.5 115 78.3
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 8.1e-48 193.7 113 80.5
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 8.1e-48 193.7 114 77.2
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 8.1e-48 193.7 112 79.5
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 1.1e-47 193.4 114 79.8
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.4e-47 193.0 114 78.9
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 1.4e-47 193.0 114 78.9
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.8e-47 192.6 114 81.6
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 1.8e-47 192.6 112 82.1
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 5.3e-47 191.0 114 78.1
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 1.5e-46 189.5 111 79.3
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 1.5e-46 189.5 118 76.3
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.6e-46 188.7 111 79.3
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 2.6e-46 188.7 108 81.5
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 4.5e-46 188.0 115 77.4
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 5.8e-46 187.6 111 80.2
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 5.8e-46 187.6 115 79.1
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 7.6e-46 187.2 114 77.2
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 1.3e-45 186.4 114 77.2
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 3.8e-45 184.9 114 76.3
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 3.8e-45 184.9 114 75.4
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 4.9e-45 184.5 111 75.7
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 4.9e-45 184.5 114 76.3
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 4.9e-45 184.5 114 76.3
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 6.4e-45 184.1 112 75.0
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 6.4e-45 184.1 115 75.7
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 8.4e-45 183.7 114 74.6
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 1.4e-44 183.0 115 74.8
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 2.4e-44 182.2 116 75.0
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 3.2e-44 181.8 115 71.3
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 4.2e-44 181.4 109 78.0
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 1.6e-43 179.5 111 73.9
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 1.6e-43 179.5 111 74.8
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 2.1e-43 179.1 111 73.0
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 2.7e-43 178.7 111 73.0
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 2.7e-43 178.7 111 73.0
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 2.7e-43 178.7 112 75.9
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 4.6e-43 177.9 111 73.9
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 4.6e-43 177.9 111 73.0
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 4.6e-43 177.9 111 72.1
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 6.0e-43 177.6 138 64.5
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 1.0e-42 176.8 114 75.4
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 3.0e-42 175.3 117 70.9
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 3.9e-42 174.9 112 70.5
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 3.9e-42 174.9 120 70.0
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 6.7e-42 174.1 111 72.1
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 6.7e-42 174.1 111 72.1
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 7.4e-41 170.6 111 71.2
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 2.1e-40 169.1 101 75.2
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 2.8e-40 168.7 126 64.3
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 8.1e-40 167.2 111 70.3
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 1.4e-39 166.4 100 77.0
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 3.1e-39 165.2 132 60.6
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 2.6e-38 162.2 108 70.4
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 1.7e-37 159.5 109 68.8
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 2.9e-37 158.7 108 69.4
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 1.3e-34 149.8 108 68.5
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 5.1e-34 147.9 83 79.5
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 8.7e-34 147.1 108 63.0
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 3.3e-33 145.2 85 75.3
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 3.3e-33 145.2 106 63.2
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 4.3e-33 144.8 115 60.9
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 5.6e-33 144.4 102 73.5
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 2.1e-32 142.5 132 56.1
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 8.2e-32 140.6 84 73.8
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 8.2e-32 140.6 100 72.0
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 6.9e-31 137.5 177 45.8
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 2.0e-30 136.0 88 73.9
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 1.9e-28 129.4 110 53.6
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.9e-28 129.4 107 56.1
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.7e-27 125.6 67 83.6
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 2.7e-27 125.6 112 49.1
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 6.0e-27 124.4 70 85.7
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 3.0e-26 122.1 75 76.0
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 3.0e-26 122.1 75 76.0
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 8.2e-24 114.0 70 78.6
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.4e-23 113.2 74 68.9
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 2.6e-22 109.0 74 62.2
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 2.9e-21 105.5 118 45.8
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 5.0e-21 104.8 61 82.0
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 4.6e-19 98.2 57 73.7
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 7.9e-19 97.4 135 37.0
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 7.9e-19 97.4 78 59.0
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 8.8e-18 94.0 54 83.3
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 8.8e-18 94.0 56 75.0
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 7.7e-14 80.9 48 81.2
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 1.9e-12 76.3 41 78.0
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 3.0e-10 68.9 58 58.6
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 2.6e-09 65.9 60 55.0
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 5.3e-07 58.2 38 63.2


User provided reference genes

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