Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g014610.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 2.2e-82 309.3 204 100.0
Sopen04g006750 Solanum pennellii HOM05D006436 ORTHO05D008011 3.4e-67 258.8 179 100.0
CAN.G268.8 Capsicum annuum HOM05D006436 ORTHO05D008011 1.3e-61 240.4 176 94.3
PGSC0003DMG400024110 Solanum tuberosum HOM05D006436 ORTHO05D008011 2.1e-61 239.6 176 94.9
Solyc04g071330.4 Solanum lycopersicum HOM05D006436 ORTHO05D008011 3.6e-61 238.8 184 90.2
Sopen04g027290 Solanum pennellii HOM05D006436 ORTHO05D008011 8.1e-61 237.7 176 94.3
Peaxi162Scf00442g00063 Petunia axillaris HOM05D006436 ORTHO05D008011 3.1e-60 235.7 176 92.6
Nitab4.5_0005193g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 6.9e-60 234.6 174 93.7
HanXRQChr10g0309911 Helianthus annuus HOM05D006436 ORTHO05D008011 7.1e-57 224.6 180 85.0
Lj4C253G7 Lonicera japonica HOM05D006436 ORTHO05D008011 9.3e-57 224.2 177 87.0
CSS0031788 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 4.6e-56 221.9 176 85.8
Hma1.2p1_0158F.1_g069740 Hydrangea macrophylla HOM05D006436 ORTHO05D008011 6.0e-56 221.5 174 89.7
ECA234G4304 Erigeron canadensis HOM05D006436 ORTHO05D008011 1.0e-55 220.7 179 80.4
Eucgr.J01642 Eucalyptus grandis HOM05D006436 ORTHO05D008011 1.9e-54 216.5 174 83.3
Cc07_g12850 Coffea canephora HOM05D006436 ORTHO05D008011 3.3e-54 215.7 176 85.2
Potri.001G225300 Populus trichocarpa HOM05D006436 ORTHO05D008011 5.6e-54 214.9 174 86.2
LjContig00141g0009494 Lotus japonicus HOM05D006436 ORTHO05D008011 9.6e-54 214.2 174 83.3
Ca_05765_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 1.3e-53 213.8 174 81.0
arahy.Tifrunner.gnm1.ann1.QIUU4Q Arachis hypogaea HOM05D006436 ORTHO05D008011 1.6e-53 213.4 176 81.2
Medtr5g077040 Medicago truncatula HOM05D006436 ORTHO05D008011 2.1e-53 213.0 179 82.7
QL08p017466 Quercus lobata HOM05D006436 ORTHO05D008011 2.1e-53 213.0 174 76.4
Ca_18506_v3 Cicer arietinum L. HOM05D006436 ORTHO05D008011 2.8e-53 212.6 174 80.5
Rhsim11G0087100 Rhododendron simsii HOM05D006436 ORTHO05D008011 3.7e-53 212.2 173 86.7
arahy.Tifrunner.gnm1.ann1.RB24L7 Arachis hypogaea HOM05D006436 ORTHO05D008011 4.8e-53 211.8 176 79.5
THA.LOC104823829 Tarenaya hassleriana HOM05D006436 ORTHO05D008011 4.8e-53 211.8 174 82.2
arahy.Tifrunner.gnm1.ann1.1G92VG Arachis hypogaea HOM05D006436 ORTHO05D008011 6.2e-53 211.5 174 82.8
arahy.Tifrunner.gnm1.ann1.7TMM1B Arachis hypogaea HOM05D006436 ORTHO05D008011 6.2e-53 211.5 176 77.8
Thecc.09G311900 Theobroma cacao HOM05D006436 ORTHO05D008011 6.2e-53 211.5 174 83.9
Psat2g043120 Pisum sativum HOM05D006436 ORTHO05D008011 1.1e-52 210.7 174 81.6
Lsat_1_v5_gn_5_79100 Lactuca sativa HOM05D006436 ORTHO05D008011 1.4e-52 210.3 180 81.7
Glyma.14G210900 Glycine max HOM05D006436 ORTHO05D008011 1.8e-52 209.9 179 81.0
Phvul.008G233200 Phaseolus vulgaris HOM05D006436 ORTHO05D008011 1.8e-52 209.9 174 82.8
CiPaw.03G076800 Carya illinoinensis HOM05D006436 ORTHO05D008011 3.1e-52 209.1 174 84.5
Manes.02G134600 Manihot esculenta HOM05D006436 ORTHO05D008011 3.1e-52 209.1 175 61.1
Cpa.g.sc178.16 Carica papaya HOM05D006436 ORTHO05D008011 5.3e-52 208.4 174 83.9
FvH4_5g27560 Fragaria vesca HOM05D006436 ORTHO05D008011 5.3e-52 208.4 176 81.8
Prupe.3G143200 Prunus persica HOM05D006436 ORTHO05D008011 5.3e-52 208.4 177 83.1
Gohir.D07G105500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 9.0e-52 207.6 174 83.9
Gorai.001G113600 Gossypium raimondii HOM05D006436 ORTHO05D008011 9.0e-52 207.6 174 83.9
Lalb_Chr16g0392121 Lupinus albus HOM05D006436 ORTHO05D008011 1.2e-51 207.2 174 81.0
GSVIVG01035239001 Vitis vinifera HOM05D006436 ORTHO05D008011 1.2e-51 207.2 176 81.8
Gohir.A07G101500 Gossypium hirsutum HOM05D006436 ORTHO05D008011 1.5e-51 206.8 174 83.9
Ciclev10022503m.g Citrus clementina HOM05D006436 ORTHO05D008011 2.0e-51 206.5 176 79.0
Oeu012529.1 Olea europaea HOM05D006436 ORTHO05D008011 2.0e-51 206.5 177 81.9
Atru.chr1.2057 Acer truncatum HOM05D006436 ORTHO05D008011 2.6e-51 206.1 174 80.5
Aqoxy7G01157 Aquilegia oxysepala HOM05D006436 ORTHO05D008011 2.6e-51 206.1 175 80.0
Dinv19074 Davidia involucrata HOM05D006436 ORTHO05D008011 2.6e-51 206.1 178 81.5
FAN18G1736 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.6e-51 206.1 174 82.2
MBI18_g05914_MAGBIO Magnolia biondii HOM05D006436 ORTHO05D008011 2.6e-51 206.1 174 79.3
TAR365G0111 Trochodendron aralioides HOM05D006436 ORTHO05D008011 3.4e-51 205.7 175 80.6
FAN08G3413 Fragaria x ananassa HOM05D006436 ORTHO05D008011 4.5e-51 205.3 176 59.1
RcHm_v2.0_Chr7g0218931 Rosa chinensis HOM05D006436 ORTHO05D008011 4.5e-51 205.3 174 80.5
VMungo0647G0400 Vigna mungo HOM05D006436 ORTHO05D008011 1.0e-50 204.1 174 81.6
AT5G37290 Arabidopsis thaliana HOM05D006436 ORTHO05D008011 1.3e-50 203.8 176 78.4
PGR042G2272 Punica granatum HOM05D006436 ORTHO05D008011 1.3e-50 203.8 174 82.8
Thhalv10027956m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 8.4e-50 201.1 176 81.8
Oeu039710.1 Olea europaea HOM05D006436 ORTHO05D008011 8.4e-50 201.1 176 81.8
TWI77G0906 Tripterygium wilfordii HOM05D006436 ORTHO05D008011 1.1e-49 200.7 177 75.1
CARHR215800 Cardamine hirsuta HOM05D006436 ORTHO05D008011 1.9e-49 199.9 176 81.2
Carub.0007s3243 Capsella rubella HOM05D006436 ORTHO05D008011 2.5e-49 199.5 179 78.8
Carub.0007s3240 Capsella rubella HOM05D006436 ORTHO05D008011 4.2e-49 198.7 176 79.5
vmacro01486 Vaccinium macrocarpon HOM05D006436 ORTHO05D008011 9.3e-49 197.6 174 81.6
AL7G45650 Arabidopsis lyrata HOM05D006436 ORTHO05D008011 1.2e-48 197.2 176 81.2
Sp1g30670 Schrenkiella parvula HOM05D006436 ORTHO05D008011 1.6e-48 196.8 176 80.1
Sed0003659 Sechium edule HOM05D006436 ORTHO05D008011 1.6e-48 196.8 176 78.4
Os11g0546200 Oryza sativa ssp. japonica HOM05D006436 ORTHO05D008011 2.1e-48 196.4 174 78.2
MELO3C025074.2 Cucumis melo HOM05D006436 ORTHO05D008011 4.6e-48 195.3 174 80.5
CsaV3_5G020600 Cucumis sativus L. HOM05D006436 ORTHO05D008011 7.9e-48 194.5 174 79.9
Zm00001eb188680 Zea mays HOM05D006436 ORTHO05D008011 7.9e-48 194.5 174 78.7
MD09G1253300 Malus domestica HOM05D006436 ORTHO05D008011 1.0e-47 194.1 179 75.4
ATR0706G244 Amborella trichopoda HOM05D006436 ORTHO05D008011 1.8e-47 193.4 174 79.9
BcaB03g13643 Brassica carinata HOM05D006436 ORTHO05D008011 6.7e-47 191.4 176 78.4
unitig_61.g26181 Utricularia gibba HOM05D006436 ORTHO05D008011 6.7e-47 191.4 191 53.4
FAN18G0548 Fragaria x ananassa HOM05D006436 ORTHO05D008011 2.5e-46 189.5 199 50.8
MSTRG.12143 Avicennia marina HOM05D006436 ORTHO05D008011 5.7e-46 188.3 174 80.5
BcaC01g04932 Brassica carinata HOM05D006436 ORTHO05D008011 1.3e-45 187.2 175 77.7
BraA03t11880Z Brassica rapa HOM05D006436 ORTHO05D008011 1.6e-45 186.8 176 56.2
PGSC0003DMG400023565 Solanum tuberosum HOM05D006436 ORTHO05D008011 1.6e-45 186.8 176 61.4
HPP92_004857 Vanilla planifolia HOM05D006436 ORTHO05D008011 1.6e-45 186.8 174 78.2
CANSAT80G1957 Cannabis sativa HOM05D006436 ORTHO05D008011 8.2e-45 184.5 174 77.0
Migut.A01047 Erythranthe guttata HOM05D006436 ORTHO05D008011 1.1e-44 184.1 174 77.6
Cfa007759 Carpinus fangiana HOM05D006436 ORTHO05D008011 1.4e-44 183.7 174 55.7
C03p31970 Brassica napus HOM05D006436 ORTHO05D008011 1.8e-44 183.3 176 55.1
BolC3t15539H Brassica oleracea HOM05D006436 ORTHO05D008011 1.8e-44 183.3 176 55.1
Sabra16G0133900 Salix brachista HOM05D006436 ORTHO05D008011 2.4e-44 183.0 247 44.5
Sc15g0000210 Simmondsia chinensis HOM05D006436 ORTHO05D008011 9.0e-44 181.0 176 52.3
PSO063G3804 Papaver somniferum HOM05D006436 ORTHO05D008011 7.6e-43 177.9 175 73.7
COL.COLO4_18608 Corchorus olitorius HOM05D006436 ORTHO05D008011 1.0e-42 177.6 155 82.6
SGA_v2.0_scaffold24G10269 Striga asiatica HOM05D006436 ORTHO05D008011 2.9e-42 176.0 204 63.2
Dinv28234 Davidia involucrata HOM05D006436 ORTHO05D008011 5.0e-42 175.3 159 82.4
Nitab4.5_0000574g0240 Nicotiana tabacum HOM05D006436 ORTHO05D008011 4.2e-41 172.2 88 93.2
FvH4_5g26310 Fragaria vesca HOM05D006436 ORTHO05D008011 7.2e-41 171.4 179 50.8
SMO347G0032 Selaginella moellendorffii HOM05D006436 ORTHO05D008011 3.0e-39 166.0 174 47.1
Hund24464 Selenicereus undatus HOM05D006436 ORTHO05D008011 3.9e-39 165.6 175 50.3
Mapoly0028s0068 Marchantia polymorpha HOM05D006436 ORTHO05D008011 5.7e-38 161.8 174 48.9
Cc00_g04020 Coffea canephora HOM05D006436 ORTHO05D008011 2.8e-37 159.5 173 52.6
Aa31LG5G11620 Aethionema arabicum HOM05D006436 ORTHO05D008011 3.7e-37 159.1 192 67.7
Nitab4.5_0012165g0010 Nicotiana tabacum HOM05D006436 ORTHO05D008011 3.7e-37 159.1 138 91.3
FAN13G2473 Fragaria x ananassa HOM05D006436 ORTHO05D008011 6.3e-37 158.3 171 50.3
SalBow6G7138 Salvia bowleyana HOM05D006436 ORTHO05D008011 6.3e-37 158.3 174 72.4
SEGI_01802 Sequoiadendron giganteum HOM05D006436 ORTHO05D008011 1.1e-36 157.5 179 46.4
DCAR_006063 Daucus carota HOM05D006436 ORTHO05D008011 4.5e-35 152.1 138 81.2
EL10Ac5g11211 Beta vulgaris HOM05D006436 ORTHO05D008011 8.5e-34 147.9 177 66.1
Duzib168G0581 Durio zibethinus HOM05D006436 ORTHO05D008011 2.5e-33 146.4 86 77.9
ClCG01G008580 Citrullus lanatus HOM05D006436 ORTHO05D008011 5.5e-33 145.2 155 75.5
CDE11G1230 Ceratophyllum demersum HOM05D006436 ORTHO05D008011 7.9e-32 141.4 138 69.6
AUR62026126 Chenopodium quinoa HOM05D006436 ORTHO05D008011 1.4e-31 140.6 87 73.6
AUR62026125 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.8e-31 140.2 87 73.6
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 3.0e-31 139.4 95 68.4
Ah.14g085550 Amaranthus hybridus HOM05D000477 ORTHO05D000338 5.1e-31 138.7 87 75.9
AUR62028452 Chenopodium quinoa HOM05D006436 ORTHO05D008011 9.7e-30 134.4 87 72.4
CSS0035006 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.3e-29 134.0 125 76.0
AagrBONN_evm.TU.Sc2ySwM_368.3316 Anthoceros agrestis HOM05D006436 ORTHO05D008011 1.7e-26 123.6 86 65.1
arahy.Tifrunner.gnm1.ann1.8KE236 Arachis hypogaea HOM05D006436 ORTHO05D008011 6.5e-26 121.7 215 38.1
CSS0025543 Camellia sinensis var. sinensis HOM05D006436 ORTHO05D008011 1.1e-22 110.9 165 40.6
Haze_14313 Corylus avellana HOM05D006436 ORTHO05D008011 2.6e-22 109.8 119 50.4
Nn4g25693 Nelumbo nucifera HOM05D006436 ORTHO05D008011 4.4e-22 109.0 120 48.3
Thhalv10028339m.g Eutrema salsugineum HOM05D006436 ORTHO05D008011 1.6e-19 100.5 128 44.5
CBR_g12236 Chara braunii HOM05D006436 ORTHO05D008011 1.5e-14 84.0 115 38.3
Nitab4.5_0011078g0020 Nicotiana tabacum HOM05D006436 ORTHO05D008011 4.8e-13 79.0 40 92.5
CAN.G935.5 Capsicum annuum HOM05D006436 ORTHO05D008011 5.9e-11 72.0 49 69.4
Nitab4.5_0011078g0030 Nicotiana tabacum HOM05D006436 ORTHO05D008011 1.7e-10 70.5 37 86.5
Thecc.05G304200 Theobroma cacao HOM05D006436 ORTHO05D008011 6.5e-10 68.6 98 41.8
CsaV3_1G031100 Cucumis sativus L. HOM05D006436 ORTHO05D008011 9.4e-09 64.7 47 63.8
QL03p022571 Quercus lobata HOM05D006436 ORTHO05D008011 3.0e-07 59.7 36 69.4


User provided reference genes

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