Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g013200.1 Solanum lycopersicum HOM05D007945 ORTHO05D010049 1.7e-85 319.3 166 100.0
Sopen04g006380 Solanum pennellii HOM05D007945 ORTHO05D010049 3.2e-71 271.9 166 88.6
PGSC0003DMG400023581 Solanum tuberosum HOM05D007945 ORTHO05D010049 8.3e-64 247.3 166 82.5
Nitab4.5_0000902g0130 Nicotiana tabacum HOM05D007945 ORTHO05D010049 3.3e-52 208.8 170 70.6
Nitab4.5_0001122g0120 Nicotiana tabacum HOM05D007945 ORTHO05D010049 2.6e-49 199.1 167 68.9
Peaxi162Scf00569g00003 Petunia axillaris HOM05D007945 ORTHO05D010049 5.1e-45 184.9 171 64.3
Dinv20782 Davidia involucrata HOM05D007945 ORTHO05D010049 7.6e-25 117.9 152 49.3
Rhsim08G0014600 Rhododendron simsii HOM05D007945 ORTHO05D010049 1.9e-23 113.2 127 51.2
Ciclev10027143m.g Citrus clementina HOM05D007945 ORTHO05D010049 3.2e-23 112.5 162 47.5
Hma1.2p1_0045F.1_g026430 Hydrangea macrophylla HOM05D007945 ORTHO05D010049 3.2e-23 112.5 128 53.9
Gohir.D11G217700 Gossypium hirsutum HOM05D007945 ORTHO05D010049 5.5e-23 111.7 133 53.4
Gorai.007G233700 Gossypium raimondii HOM05D007945 ORTHO05D010049 9.3e-23 110.9 133 53.4
Lj4C272T2 Lonicera japonica HOM05D007945 ORTHO05D010049 3.5e-22 109.0 161 45.3
Manes.13G098400 Manihot esculenta HOM05D007945 ORTHO05D010049 1.8e-21 106.7 152 48.0
QL06p047569 Quercus lobata HOM05D007945 ORTHO05D010049 1.8e-21 106.7 128 48.4
Cc07_g14340 Coffea canephora HOM05D007945 ORTHO05D010049 2.3e-21 106.3 125 52.0
Atru.chr3.1299 Acer truncatum HOM05D007945 ORTHO05D010049 3.0e-21 105.9 130 50.0
Nn1g05498 Nelumbo nucifera HOM05D007945 ORTHO05D010049 3.9e-21 105.5 159 44.0
Cfa004358 Carpinus fangiana HOM05D007945 ORTHO05D010049 5.1e-21 105.1 139 48.9
Thecc.01G092700 Theobroma cacao HOM05D007945 ORTHO05D010049 1.1e-20 104.0 153 47.7
RcHm_v2.0_Chr2g0111971 Rosa chinensis HOM05D007945 ORTHO05D010049 1.5e-20 103.6 129 49.6
COL.COLO4_27337 Corchorus olitorius HOM05D007945 ORTHO05D010049 4.3e-20 102.1 133 51.1
MD15G1315600 Malus domestica HOM05D007945 ORTHO05D010049 5.7e-20 101.7 132 47.7
TAR376G1002 Trochodendron aralioides HOM05D007945 ORTHO05D010049 1.3e-19 100.5 165 41.8
CANSAT01G1602 Cannabis sativa HOM05D007945 ORTHO05D010049 2.2e-19 99.8 153 45.1
Haze_15050 Corylus avellana HOM05D007945 ORTHO05D010049 2.2e-19 99.8 171 42.7
MELO3C007726.2 Cucumis melo HOM05D007945 ORTHO05D010049 3.7e-19 99.0 128 46.1
MBI02_g18288_MAGBIO Magnolia biondii HOM05D000510 ORTHO05D002064 4.8e-19 98.6 136 43.4
Glyma.02G040200 Glycine max HOM05D007945 ORTHO05D010049 8.2e-19 97.8 145 40.0
Oeu053574.1 Olea europaea HOM05D007945 ORTHO05D010049 8.2e-19 97.8 144 43.1
Glyma.01G024900 Glycine max HOM05D007945 ORTHO05D010049 1.1e-18 97.4 125 44.8
Phvul.002G148800 Phaseolus vulgaris HOM05D007945 ORTHO05D010049 3.1e-18 95.9 161 38.5
Lj2g0025684 Lotus japonicus HOM05D007945 ORTHO05D010049 5.3e-18 95.1 158 38.0
Aqoxy5G01332 Aquilegia oxysepala HOM05D007945 ORTHO05D010049 9.0e-18 94.4 173 37.0
Lalb_Chr16g0381801 Lupinus albus HOM05D007945 ORTHO05D010049 1.0e-16 90.9 129 41.1
Migut.K00772 Erythranthe guttata HOM05D007945 ORTHO05D010049 1.7e-16 90.1 141 44.0
Prupe.6G196100 Prunus persica HOM05D007945 ORTHO05D010049 2.2e-16 89.7 136 42.6
FAN19G2492 Fragaria x ananassa HOM05D007945 ORTHO05D010049 2.9e-16 89.4 130 46.9
FAN28G1827 Fragaria x ananassa HOM05D007945 ORTHO05D010049 2.9e-16 89.4 130 46.2
Psat2g081080 Pisum sativum HOM05D007945 ORTHO05D010049 3.8e-16 89.0 154 39.6
EL10Ac6g14794 Beta vulgaris HOM05D007945 ORTHO05D010049 6.5e-16 88.2 154 42.2
TPR.G29980 Trifolium pratense HOM05D007945 ORTHO05D010049 6.5e-16 88.2 125 43.2
FvH4_1g20030 Fragaria vesca HOM05D007945 ORTHO05D010049 8.5e-16 87.8 130 45.4
VMungo1215G0385 Vigna mungo HOM05D007945 ORTHO05D010049 1.1e-15 87.4 147 36.7
Sed0020490 Sechium edule HOM05D007945 ORTHO05D010049 1.4e-15 87.0 124 44.4
TAR628G0666 Trochodendron aralioides HOM05D007577 ORTHO05D002366 1.9e-15 86.7 149 43.6
SGA_v2.0_scaffold45G17252 Striga asiatica HOM05D007945 ORTHO05D010049 2.5e-15 86.3 156 42.3
Ca_04542_v3 Cicer arietinum L. HOM05D007945 ORTHO05D010049 3.2e-15 85.9 126 41.3
ECA232G3960 Erigeron canadensis HOM05D007945 ORTHO05D010049 4.2e-15 85.5 144 41.0
FAN26G0842 Fragaria x ananassa HOM05D007945 ORTHO05D010049 5.5e-15 85.1 130 45.4
Actinidia30841 Actinidia chinensis HOM05D007945 ORTHO05D010049 7.2e-15 84.7 89 57.3
Medtr5g032580 Medicago truncatula HOM05D007945 ORTHO05D010049 1.6e-14 83.6 159 35.8
PGR102G2218 Punica granatum HOM05D007945 ORTHO05D010049 1.6e-14 83.6 128 43.8
CiPaw.02G021700 Carya illinoinensis HOM05D007945 ORTHO05D010049 6.1e-14 81.6 139 40.3
THA.LOC104807860 Tarenaya hassleriana HOM05D007945 ORTHO05D010049 6.1e-14 81.6 97 51.5
DCAR_003454 Daucus carota HOM05D007945 ORTHO05D010049 1.0e-13 80.9 149 36.9
Sc03g0000270 Simmondsia chinensis HOM05D007945 ORTHO05D010049 3.0e-13 79.3 149 36.2
SalBow5G3321 Salvia bowleyana HOM05D007945 ORTHO05D010049 1.5e-12 77.0 126 41.3
CsaV3_6G045130 Cucumis sativus L. HOM05D007945 ORTHO05D010049 7.4e-12 74.7 133 39.8
HanXRQChr09g0259601 Helianthus annuus HOM05D007945 ORTHO05D010049 9.7e-12 74.3 146 37.0
CiPaw.01G047400 Carya illinoinensis HOM05D007945 ORTHO05D010049 1.7e-11 73.6 143 39.2
ClCG01G018480 Citrullus lanatus HOM05D007945 ORTHO05D010049 1.7e-11 73.6 135 40.7
arahy.Tifrunner.gnm1.ann1.A6KDPG Arachis hypogaea HOM05D007945 ORTHO05D010049 2.8e-11 72.8 180 36.7
arahy.Tifrunner.gnm1.ann1.N1XH1Z Arachis hypogaea HOM05D007945 ORTHO05D010049 2.8e-11 72.8 180 36.7
AT1G26290 Arabidopsis thaliana HOM05D007945 ORTHO05D010049 1.1e-10 70.9 99 43.4
CARHR246510 Cardamine hirsuta HOM05D007945 ORTHO05D010049 1.1e-10 70.9 95 45.3
ATR0022G034 Amborella trichopoda HOM05D007945 ORTHO05D010049 3.1e-10 69.3 178 34.3
AL7G12470 Arabidopsis lyrata HOM05D007945 ORTHO05D010049 4.1e-10 68.9 99 42.4
Thhalv10026515m.g Eutrema salsugineum HOM05D007945 ORTHO05D010049 5.3e-10 68.6 98 42.9
BcaB03g12302 Brassica carinata HOM05D007945 ORTHO05D010049 6.9e-10 68.2 100 41.0
BcaC01g00344 Brassica carinata HOM05D007945 ORTHO05D010049 6.9e-10 68.2 98 42.9
A08p23120 Brassica napus HOM05D007945 ORTHO05D010049 6.9e-10 68.2 98 42.9
BolC3t20117H Brassica oleracea HOM05D007945 ORTHO05D010049 6.9e-10 68.2 98 42.9
BraA08t34270Z Brassica rapa HOM05D007945 ORTHO05D010049 6.9e-10 68.2 98 42.9
Sp7g35750 Schrenkiella parvula HOM05D007945 ORTHO05D010049 9.1e-10 67.8 87 47.1
Carub.0007s0210 Capsella rubella HOM05D007945 ORTHO05D010049 1.5e-09 67.0 101 40.6
C03p78720 Brassica napus HOM05D007945 ORTHO05D010049 2.0e-09 66.6 98 41.8
Cpa.g.sc55.53 Carica papaya HOM05D007945 ORTHO05D010049 2.6e-09 66.2 132 35.6
TWI74G0422 Tripterygium wilfordii HOM05D007945 ORTHO05D010049 2.2e-08 63.2 124 36.3


User provided reference genes

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