Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g011380.4 Solanum lycopersicum HOM05D006083 ORTHO05D007634 0.0e+00 3491.4 1789 100.0
Sopen04g005570 Solanum pennellii HOM05D006083 ORTHO05D007634 0.0e+00 3318.1 1751 97.7
CAN.G786.23 Capsicum annuum HOM05D006083 ORTHO05D007634 0.0e+00 2762.3 1760 82.0
Peaxi162Scf00060g00026 Petunia axillaris HOM05D006083 ORTHO05D007634 0.0e+00 2213.0 1697 70.1
Nitab4.5_0005525g0010 Nicotiana tabacum HOM05D006083 ORTHO05D007634 0.0e+00 2107.0 1752 66.1
Nitab4.5_0003969g0020 Nicotiana tabacum HOM05D006083 ORTHO05D007634 0.0e+00 1894.0 1340 75.5
Dinv31433 Davidia involucrata HOM05D006083 ORTHO05D007634 0.0e+00 1292.3 1758 45.7
CSS0008531 Camellia sinensis var. sinensis HOM05D006083 ORTHO05D007634 0.0e+00 1258.4 1754 45.3
Actinidia02966 Actinidia chinensis HOM05D006083 ORTHO05D007634 0.0e+00 1239.9 1757 43.9
Cc02_g08180 Coffea canephora HOM05D006083 ORTHO05D007634 0.0e+00 1136.3 1706 42.8
Rhsim03G0132700 Rhododendron simsii HOM05D006083 ORTHO05D007634 0.0e+00 1127.1 1777 41.8
Haze_17036 Corylus avellana HOM05D006083 ORTHO05D007634 0.0e+00 1097.4 1746 41.3
Cfa001507 Carpinus fangiana HOM05D006083 ORTHO05D007634 0.0e+00 1096.6 1724 41.3
QL08p059019 Quercus lobata HOM05D006083 ORTHO05D007634 0.0e+00 1078.5 1772 40.9
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 6.2e-298 1028.5 1690 40.7
Lj1A934T60 Lonicera japonica HOM05D006083 ORTHO05D007634 2.4e-294 1016.5 1385 44.5
vmacro07157 Vaccinium macrocarpon HOM05D006083 ORTHO05D007634 1.2e-288 997.7 2142 35.1
Thecc.10G046700 Theobroma cacao HOM05D006083 ORTHO05D007634 1.1e-283 981.1 1783 38.1
CiPaw.01G284100 Carya illinoinensis HOM05D006083 ORTHO05D007634 1.6e-282 977.2 1774 38.8
Prupe.2G231200 Prunus persica HOM05D006083 ORTHO05D007634 2.8e-282 976.5 1768 38.3
Potri.008G052500 Populus trichocarpa HOM05D006083 ORTHO05D007634 3.2e-278 963.0 1771 37.9
DCAR_027665 Daucus carota HOM05D006083 ORTHO05D007634 5.5e-278 962.2 1878 38.0
Manes.07G113300 Manihot esculenta HOM05D006083 ORTHO05D007634 8.7e-276 954.9 1770 37.9
Potri.010G208200 Populus trichocarpa HOM05D006083 ORTHO05D007634 2.2e-274 950.3 1790 37.1
Peaxi162Scf00060g00126 Petunia axillaris HOM05D006083 ORTHO05D007634 2.4e-273 946.8 1204 49.8
Atru.chr12.505 Acer truncatum HOM05D006083 ORTHO05D007634 1.5e-272 944.1 1616 40.6
Oeu040905.3 Olea europaea HOM05D006083 ORTHO05D007634 1.5e-272 944.1 1284 44.5
COL.COLO4_14970 Corchorus olitorius HOM05D006083 ORTHO05D007634 1.3e-271 941.0 1780 37.4
Nn2g12936 Nelumbo nucifera HOM05D006083 ORTHO05D007634 6.1e-269 932.2 1820 36.9
TWI15G0674 Tripterygium wilfordii HOM05D006083 ORTHO05D007634 5.1e-268 929.1 1784 36.7
GSVIVG01016589001 Vitis vinifera HOM05D006083 ORTHO05D007634 6.7e-268 928.7 1770 37.6
MD07G1193600 Malus domestica HOM05D006083 ORTHO05D007634 9.7e-267 924.9 1862 36.4
Sabra08G0037800 Salix brachista HOM05D006083 ORTHO05D007634 1.3e-266 924.5 1774 37.1
Gorai.012G069900 Gossypium raimondii HOM05D006083 ORTHO05D007634 1.7e-266 924.1 1768 37.6
Gohir.D04G062600 Gossypium hirsutum HOM05D006083 ORTHO05D007634 3.7e-266 922.9 1758 37.4
Glyma.18G288300 Glycine max HOM05D006083 ORTHO05D007634 4.8e-266 922.5 1764 36.3
Gohir.A05G349900 Gossypium hirsutum HOM05D006083 ORTHO05D007634 3.1e-265 919.8 1766 37.8
FAN06G0387 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.5e-256 889.4 1788 36.5
FAN03G2083 Fragaria x ananassa HOM05D006083 ORTHO05D007634 7.7e-256 888.6 1793 36.1
FAN01G1089 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.0e-252 876.3 1791 36.1
CANSAT56G1432 Cannabis sativa HOM05D006083 ORTHO05D007634 5.2e-252 875.9 1784 36.7
Duzib114G0803 Durio zibethinus HOM05D006083 ORTHO05D007634 6.7e-252 875.5 1444 39.9
FAN06G5109 Fragaria x ananassa HOM05D006083 ORTHO05D007634 6.7e-252 875.5 1794 36.0
Lj1g0008101 Lotus japonicus HOM05D006083 ORTHO05D007634 6.3e-250 869.0 1777 35.8
FvH4_7g21930 Fragaria vesca HOM05D006083 ORTHO05D007634 1.5e-246 857.8 1789 36.1
arahy.Tifrunner.gnm1.ann1.ES2X5Y Arachis hypogaea HOM05D006083 ORTHO05D007634 1.9e-246 857.4 1766 35.3
arahy.Tifrunner.gnm1.ann1.V7LDKI Arachis hypogaea HOM05D006083 ORTHO05D007634 1.9e-246 857.4 1766 35.3
ClCG09G020050 Citrullus lanatus HOM05D006083 ORTHO05D007634 3.7e-242 843.2 1780 35.4
PGR142G3850 Punica granatum HOM05D006083 ORTHO05D007634 8.3e-242 842.0 1680 36.0
Aqoxy4G02985 Aquilegia oxysepala HOM05D006083 ORTHO05D007634 7.7e-240 835.5 1824 33.8
VMungo1383G1537 Vigna mungo HOM05D006083 ORTHO05D007634 2.9e-239 833.6 1788 35.6
MELO3C025449.2 Cucumis melo HOM05D006083 ORTHO05D007634 1.9e-238 830.9 1787 35.5
Lalb_Chr10g0091771 Lupinus albus HOM05D006083 ORTHO05D007634 2.5e-238 830.5 1284 40.0
TAR623G0128 Trochodendron aralioides HOM05D006083 ORTHO05D007634 6.1e-237 825.9 1663 35.4
Eucgr.G02918 Eucalyptus grandis HOM05D006083 ORTHO05D007634 5.2e-236 822.8 1766 34.9
Ciclev10030497m.g Citrus clementina HOM05D006083 ORTHO05D007634 8.8e-236 822.0 1751 35.2
Psat3g185080 Pisum sativum HOM05D006083 ORTHO05D007634 1.7e-234 817.8 1775 33.7
Hund12547 Selenicereus undatus HOM05D006083 ORTHO05D007634 2.8e-234 817.0 1813 34.6
Sc06g0002680 Simmondsia chinensis HOM05D006083 ORTHO05D007634 6.3e-234 815.8 1260 40.1
Lalb_Chr04g0257841 Lupinus albus HOM05D006083 ORTHO05D007634 2.5e-230 803.9 1289 38.5
MBI14_g18543_MAGBIO Magnolia biondii HOM05D006083 ORTHO05D007634 2.5e-230 803.9 1457 37.3
Ca_07227_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 3.3e-230 803.5 1662 34.8
TPR.G15506 Trifolium pratense HOM05D006083 ORTHO05D007634 9.5e-230 802.0 1348 38.3
Medtr7g024000 Medicago truncatula HOM05D006083 ORTHO05D007634 1.2e-229 801.6 1770 34.8
EL10Ac2g03425 Beta vulgaris HOM05D006083 ORTHO05D007634 1.0e-228 798.5 1764 35.4
CsaV3_5G026410 Cucumis sativus L. HOM05D006083 ORTHO05D007634 1.8e-228 797.7 1785 34.6
Sed0020975 Sechium edule HOM05D006083 ORTHO05D007634 3.0e-223 780.4 1779 34.1
HanXRQChr09g0247731 Helianthus annuus HOM05D006083 ORTHO05D007634 5.6e-222 776.2 1779 34.2
Lsat_1_v5_gn_9_65161 Lactuca sativa HOM05D006083 ORTHO05D007634 3.1e-220 770.4 1739 35.3
PSO339G3664 Papaver somniferum HOM05D006083 ORTHO05D007634 1.2e-216 758.4 1817 33.6
PSO384G3245 Papaver somniferum HOM05D006083 ORTHO05D007634 3.0e-215 753.8 1770 33.8
AUR62040954 Chenopodium quinoa HOM05D006083 ORTHO05D007634 8.6e-215 752.3 1764 34.4
THA.LOC104810174 Tarenaya hassleriana HOM05D006083 ORTHO05D007634 1.8e-212 744.6 1764 33.6
AUR62038373 Chenopodium quinoa HOM05D006083 ORTHO05D007634 2.3e-207 727.6 1704 34.6
Phvul.008G013732 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 2.4e-193 681.0 911 41.3
BolC4t28242H Brassica oleracea HOM05D006083 ORTHO05D007634 4.2e-193 680.2 1763 33.0
Thhalv10016135m.g Eutrema salsugineum HOM05D006083 ORTHO05D007634 6.0e-192 676.4 1760 33.1
CARHR134450 Cardamine hirsuta HOM05D006083 ORTHO05D007634 7.8e-192 676.0 1742 32.6
AL4G36990 Arabidopsis lyrata HOM05D006083 ORTHO05D007634 2.3e-191 674.5 1753 32.7
Carub.0004s2165 Capsella rubella HOM05D006083 ORTHO05D007634 2.3e-191 674.5 1754 32.6
CANSAT56G0880 Cannabis sativa HOM05D006083 ORTHO05D007634 5.1e-191 673.3 812 46.1
AT2G39580 Arabidopsis thaliana HOM05D006083 ORTHO05D007634 6.6e-191 672.9 1770 32.4
Sp4g21870 Schrenkiella parvula HOM05D006083 ORTHO05D007634 3.3e-190 670.6 1753 32.6
C04p67440 Brassica napus HOM05D006083 ORTHO05D007634 3.6e-189 667.2 1765 33.3
BraA04t18470Z Brassica rapa HOM05D006083 ORTHO05D007634 1.4e-188 665.2 1751 33.4
Aa31LG5G20040 Aethionema arabicum HOM05D006083 ORTHO05D007634 1.7e-186 658.3 1339 35.6
A04p30380 Brassica napus HOM05D006083 ORTHO05D007634 1.4e-185 655.2 1754 33.2
TAR369G0895 Trochodendron aralioides HOM05D006083 ORTHO05D007634 2.2e-178 631.3 706 47.6
FAN10G0925 Fragaria x ananassa HOM05D006083 ORTHO05D007634 8.7e-175 619.4 1516 33.0
Ca_29789_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 9.0e-172 609.4 748 43.6
ATR0559G184 Amborella trichopoda HOM05D006083 ORTHO05D007634 7.4e-166 589.7 1821 29.9
Cpa.g.sc1.374 Carica papaya HOM05D006083 ORTHO05D007634 8.2e-165 586.3 658 47.4
Zm00001eb028750 Zea mays HOM05D006083 ORTHO05D007634 2.2e-162 578.2 1287 33.2
RcHm_v2.0_Chr1g0366211 Rosa chinensis HOM05D006083 ORTHO05D007634 5.0e-162 577.0 637 49.6
CDE05G2458 Ceratophyllum demersum HOM05D006083 ORTHO05D007634 3.2e-153 547.7 1260 31.7
SHI22592 Sapria himalayana HOM05D006083 ORTHO05D007634 9.1e-148 529.6 1777 28.9
SEGI_22945 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 8.3e-117 426.8 891 32.2
HPP92_018996 Vanilla planifolia HOM05D006083 ORTHO05D007634 3.0e-98 365.2 675 35.9
RcHm_v2.0_Chr1g0366201 Rosa chinensis HOM05D006083 ORTHO05D007634 2.0e-94 352.4 1119 31.5
FAN10G2882 Fragaria x ananassa HOM05D006083 ORTHO05D007634 4.4e-94 351.3 436 46.1
Mapoly0075s0039 Marchantia polymorpha HOM05D006083 ORTHO05D007634 2.1e-83 315.8 937 28.9
BcaB06g29099 Brassica carinata HOM05D006083 ORTHO05D007634 1.2e-78 300.1 870 30.6
Actinidia07719 Actinidia chinensis HOM05D001446 ORTHO05D001360 3.9e-74 285.0 655 33.1
Os12g0566500 Oryza sativa ssp. japonica HOM05D006083 ORTHO05D007634 9.6e-73 280.4 454 36.1
Pp3c6_12750 Physcomitrium patens HOM05D006083 ORTHO05D007634 7.1e-68 264.2 842 27.7
SEGI_25206 Sequoiadendron giganteum HOM05D006083 ORTHO05D007634 1.6e-64 253.1 536 31.3
Cpa.g.sc1.375 Carica papaya HOM05D006083 ORTHO05D007634 2.2e-61 242.7 561 34.9
AagrBONN_evm.TU.Sc2ySwM_228.2795 Anthoceros agrestis HOM05D000140 ORTHO05D007634 3.5e-59 235.3 650 30.5
TAR369G0795 Trochodendron aralioides HOM05D006083 ORTHO05D007634 1.6e-51 209.9 823 27.7
SMO367G1201 Selaginella moellendorffii HOM05D006083 ORTHO05D007634 3.1e-47 195.7 1201 24.6
Hund24433 Selenicereus undatus HOM05D006083 ORTHO05D007634 5.7e-33 148.3 746 26.0
Phvul.008G013666 Phaseolus vulgaris HOM05D006083 ORTHO05D007634 8.2e-32 144.4 672 28.9
Glyma.02G093802 Glycine max HOM05D006083 ORTHO05D007634 3.2e-28 132.5 133 43.6
Ca_07226_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 5.9e-22 111.7 127 40.9
Oeu023787.1 Olea europaea HOM05D006083 ORTHO05D007634 4.2e-20 105.5 334 31.7
Lsat_1_v5_gn_7_4020 Lactuca sativa HOM05D006083 ORTHO05D007634 7.7e-14 84.7 125 43.2
HPP92_018997 Vanilla planifolia HOM05D006083 ORTHO05D007634 4.7e-11 75.5 329 25.5
AagrBONN_evm.TU.Sc2ySwM_228.2798 Anthoceros agrestis HOM05D006083 ORTHO05D007634 1.5e-09 70.5 93 45.2
ATR0618G162 Amborella trichopoda HOM05D006083 ORTHO05D007634 2.6e-09 69.7 102 43.1
AL7G29000 Arabidopsis lyrata HOM05D006083 ORTHO05D011291 3.4e-09 69.3 46 56.5
Peaxi162Scf00060g00125 Petunia axillaris HOM05D006083 ORTHO05D007634 4.4e-09 68.9 117 45.3
Ca_29897_v3 Cicer arietinum L. HOM05D006083 ORTHO05D007634 1.3e-08 67.4 111 39.6
Lalb_Chr04g0257831 Lupinus albus HOM05D006083 ORTHO05D007634 5.4e-07 62.0 397 29.2


User provided reference genes

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