Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g010080.3 Solanum lycopersicum HOM05D005077 ORTHO05D006889 0.0e+00 1434.1 730 100.0
Sopen04g005220 Solanum pennellii HOM05D005077 ORTHO05D006889 0.0e+00 1419.8 730 98.8
PGSC0003DMG400011494 Solanum tuberosum HOM05D005077 ORTHO05D006889 0.0e+00 1387.9 758 93.9
Nitab4.5_0006737g0070 Nicotiana tabacum HOM05D005077 ORTHO05D006889 0.0e+00 1163.3 766 79.4
Peaxi162Scf00528g00225 Petunia axillaris HOM05D005077 ORTHO05D006889 4.3e-306 1054.3 744 74.7
Nitab4.5_0003780g0090 Nicotiana tabacum HOM05D005077 ORTHO05D006889 6.3e-289 997.3 744 72.6
Actinidia39994 Actinidia chinensis HOM05D005077 ORTHO05D006889 2.0e-279 965.7 745 67.0
Duzib177G0384 Durio zibethinus HOM05D005077 ORTHO05D006889 1.1e-274 949.9 742 66.0
Oeu006006.2 Olea europaea HOM05D005077 ORTHO05D006889 4.4e-274 948.0 745 65.0
Potri.019G019600 Populus trichocarpa HOM05D005077 ORTHO05D006889 9.7e-274 946.8 743 65.9
GSVIVG01023486001 Vitis vinifera HOM05D005077 ORTHO05D006889 9.7e-274 946.8 743 66.5
CAN.G786.40 Capsicum annuum HOM05D005077 ORTHO05D006889 1.7e-273 946.0 627 79.7
Prupe.6G350500 Prunus persica HOM05D005077 ORTHO05D006889 8.2e-273 943.7 743 65.8
Gorai.007G275500 Gossypium raimondii HOM05D005077 ORTHO05D006889 4.1e-272 941.4 743 65.1
MD04G1230700 Malus domestica HOM05D005077 ORTHO05D006889 4.1e-272 941.4 742 65.9
Gohir.D11G257100 Gossypium hirsutum HOM05D005077 ORTHO05D006889 5.3e-272 941.0 743 65.0
Thecc.05G270400 Theobroma cacao HOM05D005077 ORTHO05D006889 7.0e-272 940.6 743 65.4
Cfa006359 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.2e-270 935.6 745 64.6
Manes.08G139800 Manihot esculenta HOM05D005077 ORTHO05D006889 5.0e-270 934.5 747 65.6
Migut.F00798 Erythranthe guttata HOM05D005077 ORTHO05D006889 1.9e-269 932.6 745 64.6
Potri.013G047400 Populus trichocarpa HOM05D005077 ORTHO05D006889 5.5e-269 931.0 743 65.7
SalBow3G3009 Salvia bowleyana HOM05D005077 ORTHO05D006889 1.2e-268 929.9 744 64.1
TAR362G0145 Trochodendron aralioides HOM05D005077 ORTHO05D006889 1.2e-268 929.9 745 64.3
CiPaw.07G073200 Carya illinoinensis HOM05D005077 ORTHO05D006889 6.1e-268 927.5 743 64.5
COL.COLO4_15493 Corchorus olitorius HOM05D005077 ORTHO05D006889 1.4e-267 926.4 768 62.8
MSTRG.27374 Avicennia marina HOM05D005077 ORTHO05D006889 1.8e-267 926.0 745 64.8
CANSAT54G1999 Cannabis sativa HOM05D005077 ORTHO05D006889 2.4e-264 915.6 743 63.7
Rhsim05G0172000 Rhododendron simsii HOM05D005077 ORTHO05D006889 9.1e-264 913.7 768 63.5
HanXRQChr14g0454211 Helianthus annuus HOM05D005077 ORTHO05D006889 7.7e-263 910.6 747 63.2
ECA238G3062 Erigeron canadensis HOM05D005077 ORTHO05D006889 2.5e-261 905.6 745 63.1
PGR142G0621 Punica granatum HOM05D005077 ORTHO05D006889 2.8e-257 892.1 739 64.5
FvH4_6g01810 Fragaria vesca HOM05D005077 ORTHO05D006889 4.8e-257 891.3 742 61.5
PSO832G3809 Papaver somniferum HOM05D005077 ORTHO05D006889 6.3e-257 891.0 746 62.9
PSO210G4243 Papaver somniferum HOM05D005077 ORTHO05D006889 5.4e-256 887.9 746 62.5
CSS0033596 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D006889 7.0e-256 887.5 674 69.0
Lj1g0022218 Lotus japonicus HOM05D005077 ORTHO05D006889 7.0e-256 887.5 746 62.2
RcHm_v2.0_Chr3g0449521 Rosa chinensis HOM05D005077 ORTHO05D006889 7.0e-256 887.5 743 61.8
CARHR078630 Cardamine hirsuta HOM05D005077 ORTHO05D006889 1.6e-255 886.3 742 62.5
Lj2A44T74 Lonicera japonica HOM05D005077 ORTHO05D006889 3.5e-255 885.2 803 58.9
Ca_08303_v3 Cicer arietinum L. HOM05D005077 ORTHO05D006889 4.5e-255 884.8 774 60.6
Glyma.19G115700 Glycine max HOM05D005077 ORTHO05D006889 5.9e-255 884.4 746 62.9
THA.LOC104827285 Tarenaya hassleriana HOM05D005077 ORTHO05D006889 5.9e-255 884.4 744 61.7
TWI36G1092 Tripterygium wilfordii HOM05D005077 ORTHO05D006889 5.9e-255 884.4 749 62.3
VMungo1383G1518 Vigna mungo HOM05D005077 ORTHO05D006889 3.8e-254 881.7 745 62.1
Thhalv10020155m.g Eutrema salsugineum HOM05D005077 ORTHO05D006889 1.9e-253 879.4 745 62.4
Eucgr.B02151 Eucalyptus grandis HOM05D005077 ORTHO05D006889 2.5e-253 879.0 736 62.0
Sc20g0000660 Simmondsia chinensis HOM05D005077 ORTHO05D006889 3.2e-253 878.6 744 62.4
Phvul.001G114900 Phaseolus vulgaris HOM05D005077 ORTHO05D006889 5.5e-253 877.9 745 62.1
Cpa.g.sc306.8 Carica papaya HOM05D005077 ORTHO05D006889 2.1e-252 875.9 660 68.9
BcaB04g19332 Brassica carinata HOM05D005077 ORTHO05D006889 4.7e-252 874.8 739 62.0
AL3G14430 Arabidopsis lyrata HOM05D005077 ORTHO05D006889 8.0e-252 874.0 738 62.6
BraA03t12537Z Brassica rapa HOM05D005077 ORTHO05D006889 2.3e-251 872.5 742 62.7
Medtr7g111650 Medicago truncatula HOM05D005077 ORTHO05D006889 1.2e-250 870.2 744 61.6
Aqoxy5G00195 Aquilegia oxysepala HOM05D005077 ORTHO05D006889 1.5e-250 869.8 745 60.7
TPR.G4698 Trifolium pratense HOM05D005077 ORTHO05D006889 1.5e-250 869.8 743 61.9
Aa31LG5G14920 Aethionema arabicum HOM05D005077 ORTHO05D006889 2.0e-250 869.4 758 60.8
BolC5t34930H Brassica oleracea HOM05D005077 ORTHO05D006889 2.0e-250 869.4 740 61.9
Psat3g087440 Pisum sativum HOM05D005077 ORTHO05D006889 2.0e-250 869.4 744 60.9
vmacro19987 Vaccinium macrocarpon HOM05D005077 ORTHO05D006889 4.4e-250 868.2 812 58.5
AT3G04480 Arabidopsis thaliana HOM05D005077 ORTHO05D006889 5.7e-250 867.8 745 61.6
C05p62770 Brassica napus HOM05D005077 ORTHO05D006889 7.5e-250 867.5 740 62.0
Sed0014730 Sechium edule HOM05D005077 ORTHO05D006889 1.3e-249 866.7 745 61.3
BcaC01g04375 Brassica carinata HOM05D005077 ORTHO05D006889 8.3e-249 864.0 740 61.6
C03p40820 Brassica napus HOM05D005077 ORTHO05D006889 8.3e-249 864.0 740 61.6
BraA05t23044Z Brassica rapa HOM05D005077 ORTHO05D006889 1.8e-248 862.8 745 61.3
BcaC05g30222 Brassica carinata HOM05D005077 ORTHO05D006889 2.4e-248 862.4 742 61.1
A05p43000 Brassica napus HOM05D005077 ORTHO05D006889 2.4e-248 862.4 741 61.3
Carub.0003s0364 Capsella rubella HOM05D005077 ORTHO05D006889 7.8e-247 857.4 739 60.6
A03p33620 Brassica napus HOM05D005077 ORTHO05D006889 1.3e-246 856.7 743 61.6
MELO3C008703.2 Cucumis melo HOM05D005077 ORTHO05D006889 1.1e-245 853.6 747 60.0
Lsat_1_v5_gn_2_108321 Lactuca sativa HOM05D005077 ORTHO05D006889 2.8e-244 849.0 740 60.7
EL10Ac9g21459 Beta vulgaris HOM05D005077 ORTHO05D006889 8.0e-244 847.4 746 59.8
Sabra19G0032000 Salix brachista HOM05D005077 ORTHO05D006889 1.2e-242 843.6 826 56.9
Atru.chr2.993 Acer truncatum HOM05D005077 ORTHO05D006889 3.4e-242 842.0 612 70.6
BcaC05g29939 Brassica carinata HOM05D005077 ORTHO05D006889 5.7e-242 841.3 743 61.0
Nn1g02888 Nelumbo nucifera HOM05D005077 ORTHO05D006889 9.8e-242 840.5 678 64.9
BolC3t16351H Brassica oleracea HOM05D005077 ORTHO05D006889 2.9e-241 839.0 746 60.6
FAN09G0372 Fragaria x ananassa HOM05D005077 ORTHO05D006889 9.2e-240 833.9 777 57.3
FAN14G3018 Fragaria x ananassa HOM05D005077 ORTHO05D006889 2.7e-239 832.4 779 57.0
FAN14G2113 Fragaria x ananassa HOM05D005077 ORTHO05D006889 7.8e-239 830.9 780 56.9
MBI10_g13801_MAGBIO Magnolia biondii HOM05D005077 ORTHO05D006889 2.3e-238 829.3 734 61.0
ClCG11G010550 Citrullus lanatus HOM05D005077 ORTHO05D006889 2.8e-236 822.4 740 58.8
Cc02_g08770 Coffea canephora HOM05D005077 ORTHO05D006889 2.8e-236 822.4 663 65.5
ATR0736G030 Amborella trichopoda HOM05D005077 ORTHO05D006889 4.4e-234 815.1 742 58.4
Hund06905 Selenicereus undatus HOM05D005077 ORTHO05D006889 2.7e-231 805.8 771 57.5
DCAR_003547 Daucus carota HOM05D005077 ORTHO05D006889 1.0e-230 803.9 755 57.6
Ciclev10019185m.g Citrus clementina HOM05D005077 ORTHO05D006889 1.6e-228 796.6 667 63.7
AUR62013106 Chenopodium quinoa HOM05D005077 ORTHO05D006889 4.7e-228 795.0 765 56.3
Dinv35947 Davidia involucrata HOM05D005077 ORTHO05D006889 1.1e-227 793.9 567 72.7
QL07p018541 Quercus lobata HOM05D005077 ORTHO05D006889 2.3e-227 792.7 659 63.3
arahy.Tifrunner.gnm1.ann1.2V8KIQ Arachis hypogaea HOM05D005077 ORTHO05D006889 5.2e-227 791.6 748 57.9
SGA_v2.0_scaffold1G00651 Striga asiatica HOM05D005077 ORTHO05D006889 2.0e-226 789.6 820 54.0
Gohir.A11G246900 Gossypium hirsutum HOM05D005077 ORTHO05D006889 4.4e-226 788.5 666 62.0
Os02g0810450 Oryza sativa ssp. japonica HOM05D005077 ORTHO05D006889 1.9e-224 783.1 754 56.9
Sabra13G0043400 Salix brachista HOM05D005077 ORTHO05D006889 1.7e-222 776.5 729 59.7
BcaC05g30195 Brassica carinata HOM05D005077 ORTHO05D006889 3.9e-222 775.4 740 57.6
HPP92_014753 Vanilla planifolia HOM05D005077 ORTHO05D006889 3.1e-219 765.8 750 55.3
Lalb_Chr22g0358841 Lupinus albus HOM05D005077 ORTHO05D006889 2.9e-209 732.6 672 58.5
arahy.Tifrunner.gnm1.ann1.FVV1VG Arachis hypogaea HOM05D005077 ORTHO05D006889 2.5e-205 719.5 765 53.9
CsaV3_2G009810 Cucumis sativus L. HOM05D005077 ORTHO05D006889 1.3e-198 697.2 658 56.5
arahy.Tifrunner.gnm1.ann1.2UET99 Arachis hypogaea HOM05D005077 ORTHO05D006889 4.0e-195 685.6 748 53.1
arahy.Tifrunner.gnm1.ann1.BW8NI8 Arachis hypogaea HOM05D005077 ORTHO05D006889 6.9e-195 684.9 742 53.1
Hma1.2p1_0114F.1_g055300 Hydrangea macrophylla HOM05D005077 ORTHO05D006889 4.5e-194 682.2 623 58.9
CDE07G0212 Ceratophyllum demersum HOM05D005077 ORTHO05D006889 2.3e-190 669.8 739 49.5
unitig_748.g6990 Utricularia gibba HOM05D005077 ORTHO05D006889 1.0e-182 644.4 751 49.0
AagrBONN_evm.TU.Sc2ySwM_362.1555 Anthoceros agrestis HOM05D005077 ORTHO05D006889 8.2e-172 608.2 770 46.6
Haze_04419 Corylus avellana HOM05D005077 ORTHO05D006889 5.5e-168 595.5 922 41.6
Oeu041238.1 Olea europaea HOM05D005077 ORTHO05D006889 3.6e-167 592.8 653 51.8
Pp3c11_830 Physcomitrium patens HOM05D005077 ORTHO05D006889 3.9e-166 589.3 693 47.2
Zm00001eb258450 Zea mays HOM05D005077 ORTHO05D006889 2.6e-165 586.6 637 52.1
arahy.Tifrunner.gnm1.ann1.CACA61 Arachis hypogaea HOM05D005077 ORTHO05D006889 1.2e-159 567.8 753 47.7
Sp3g03330 Schrenkiella parvula HOM05D005077 ORTHO05D006889 8.8e-158 561.6 558 55.6
SMO348G0068 Selaginella moellendorffii HOM05D005077 ORTHO05D006889 4.4e-157 559.3 548 55.5
CBR_g3613 Chara braunii HOM05D005077 ORTHO05D006889 3.7e-156 556.2 613 51.1
Mapoly0027s0145 Marchantia polymorpha HOM05D005077 ORTHO05D006889 1.7e-153 547.4 810 40.7
Eucgr.B02424 Eucalyptus grandis HOM05D005077 ORTHO05D006889 5.7e-141 505.8 517 52.8
SEGI_09343 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 4.0e-134 483.0 393 61.6
PGSC0003DMG400019115 Solanum tuberosum HOM05D005077 ORTHO05D006889 1.9e-112 411.0 350 64.9
AUR62010111 Chenopodium quinoa HOM05D005077 ORTHO05D006889 8.1e-103 379.0 406 51.2
MCO10G045 Micromonas commoda HOM05D005077 ORTHO05D006889 1.3e-92 345.1 803 31.0
Cre01.g033091 Chlamydomonas reinhardtii HOM05D005077 ORTHO05D006889 7.1e-75 286.2 234 60.7
PRCOL_00005667 Prasinoderma coloniale HOM05D005077 ORTHO05D006889 6.7e-73 279.6 541 35.7
SEGI_01626 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 2.9e-60 237.7 372 39.2
SEGI_03702 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.5e-56 225.3 227 52.4
SEGI_18706 Sequoiadendron giganteum HOM05D005077 ORTHO05D006889 1.5e-56 225.3 227 52.4
SHI22754 Sapria himalayana HOM05D005077 ORTHO05D006889 5.0e-52 210.3 187 63.6
Cfa026934 Carpinus fangiana HOM05D005077 ORTHO05D006889 2.7e-50 204.5 575 31.1
PGSC0003DMG400019116 Solanum tuberosum HOM05D005077 ORTHO05D018175 3.7e-47 194.1 109 92.7
FAN05G0362 Fragaria x ananassa HOM05D005077 ORTHO05D006889 6.3e-47 193.4 146 65.1
Duzib106G1915 Durio zibethinus HOM05D005077 ORTHO05D006889 8.8e-41 172.9 162 56.8
BcaC01g04372 Brassica carinata HOM05D003677 ORTHO05D004231 5.9e-37 160.2 102 76.5
Lalb_Chr22g0358851 Lupinus albus HOM05D005077 ORTHO05D006889 2.7e-34 151.4 77 90.9
Cc02_g08780 Coffea canephora HOM05D005077 ORTHO05D006889 3.6e-34 151.0 77 92.2
QL07p018546 Quercus lobata HOM05D005077 ORTHO05D006889 5.2e-33 147.1 77 84.4
FAN05G3606 Fragaria x ananassa HOM05D005077 ORTHO05D019498 7.7e-29 133.3 189 38.6
Peaxi162Scf00528g00025 Petunia axillaris HOM05D000011 ORTHO05D015719 1.3e-23 115.9 65 84.6
C08p13010 Brassica napus HOM05D005077 ORTHO05D006889 2.4e-22 111.7 56 89.3
arahy.Tifrunner.gnm1.ann1.TVQ2CS Arachis hypogaea HOM05D005077 ORTHO05D006889 2.5e-19 101.7 171 40.4
BcaC05g29940 Brassica carinata HOM05D005077 ORTHO05D018175 3.7e-15 87.8 191 36.1
EL10Ac5g11645 Beta vulgaris HOM05D005077 ORTHO05D006889 3.2e-14 84.7 50 74.0
CSS0009313 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 3.3e-11 74.7 77 49.4
Atru.chr2.994 Acer truncatum HOM05D005077 ORTHO05D018175 1.4e-09 69.3 86 50.0
Hund05190 Selenicereus undatus HOM05D005077 ORTHO05D006889 3.4e-08 64.7 56 55.4
CSS0021399 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 1.4e-06 59.3 66 42.4
CSS0037989 Camellia sinensis var. sinensis HOM05D005077 ORTHO05D018175 2.4e-06 58.5 66 43.9


User provided reference genes

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