Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g009940.4 Solanum lycopersicum HOM05D005617 ORTHO05D006847 5.0e-177 624.4 333 100.0
Sopen04g005070 Solanum pennellii HOM05D005617 ORTHO05D006847 1.2e-154 550.1 295 99.0
CAN.G1609.4 Capsicum annuum HOM05D005617 ORTHO05D006847 1.1e-136 490.3 295 88.5
Nitab4.5_0003780g0030 Nicotiana tabacum HOM05D005617 ORTHO05D006847 6.2e-127 458.0 274 86.5
Peaxi162Scf00135g00418 Petunia axillaris HOM05D005617 ORTHO05D006847 2.6e-125 452.6 295 81.7
PGSC0003DMG400011501 Solanum tuberosum HOM05D005617 ORTHO05D006847 3.0e-121 439.1 239 97.1
Nitab4.5_0003768g0040 Nicotiana tabacum HOM05D005617 ORTHO05D006847 1.1e-115 420.6 274 79.9
Dinv07760 Davidia involucrata HOM05D005617 ORTHO05D006847 1.6e-106 390.2 281 70.1
Hma1.2p1_0075F.1_g039170 Hydrangea macrophylla HOM05D005617 ORTHO05D006847 1.5e-104 383.6 276 68.8
CSS0012605 Camellia sinensis var. sinensis HOM05D005617 ORTHO05D006847 4.4e-104 382.1 277 69.3
HanXRQChr14g0455191 Helianthus annuus HOM05D005617 ORTHO05D006847 2.2e-103 379.8 295 67.5
MSTRG.27377 Avicennia marina HOM05D005617 ORTHO05D006847 7.7e-101 371.3 314 61.8
SalBow3G1639 Salvia bowleyana HOM05D005617 ORTHO05D006847 2.2e-100 369.8 257 71.2
Oeu012233.2 Olea europaea HOM05D005617 ORTHO05D006847 3.8e-100 369.0 297 66.7
Cc02_g08910 Coffea canephora HOM05D005617 ORTHO05D006847 5.0e-100 368.6 296 66.2
Sc06g0003230 Simmondsia chinensis HOM05D005617 ORTHO05D006847 1.9e-99 366.7 285 65.6
GSVIVG01023530001 Vitis vinifera HOM05D005617 ORTHO05D006847 7.2e-99 364.8 276 66.3
MBI10_g30078_MAGBIO Magnolia biondii HOM05D005617 ORTHO05D006847 2.1e-98 363.2 256 70.3
CANSAT54G2044 Cannabis sativa HOM05D005617 ORTHO05D006847 2.7e-98 362.8 275 65.8
CiPaw.08G118100 Carya illinoinensis HOM05D005617 ORTHO05D006847 4.7e-98 362.1 299 62.9
TAR636G3199 Trochodendron aralioides HOM05D005617 ORTHO05D006847 4.7e-98 362.1 253 70.0
ECA238G4125 Erigeron canadensis HOM05D005617 ORTHO05D006847 2.3e-97 359.8 283 65.4
Manes.08G138800 Manihot esculenta HOM05D005617 ORTHO05D006847 1.7e-95 353.6 261 65.9
Eucgr.B02145 Eucalyptus grandis HOM05D005617 ORTHO05D006847 2.2e-95 353.2 223 78.0
AUR62004851 Chenopodium quinoa HOM05D005617 ORTHO05D006847 2.8e-95 352.8 299 62.2
Ciclev10021517m.g Citrus clementina HOM05D005617 ORTHO05D006847 4.8e-95 352.1 264 66.7
Eucgr.L02949 Eucalyptus grandis HOM05D005617 ORTHO05D006847 4.8e-95 352.1 223 78.0
Prupe.6G349300 Prunus persica HOM05D005617 ORTHO05D006847 6.3e-95 351.7 243 70.4
MD09G1286500 Malus domestica HOM05D005617 ORTHO05D006847 8.2e-95 351.3 243 70.8
EL10Ac4g09040 Beta vulgaris HOM05D005617 ORTHO05D006847 1.1e-94 350.9 245 70.2
Lsat_1_v5_gn_2_108021 Lactuca sativa HOM05D005617 ORTHO05D006847 1.8e-94 350.1 261 67.4
Migut.F00803 Erythranthe guttata HOM05D005617 ORTHO05D006847 2.4e-94 349.7 255 69.0
MD17G1278900 Malus domestica HOM05D005617 ORTHO05D006847 5.3e-94 348.6 317 60.3
PGR142G1895 Punica granatum HOM05D005617 ORTHO05D006847 5.3e-94 348.6 222 76.1
Actinidia34747 Actinidia chinensis HOM05D005617 ORTHO05D006847 1.2e-93 347.4 262 64.9
Lj2A41G63 Lonicera japonica HOM05D005617 ORTHO05D006847 1.2e-93 347.4 256 68.0
Potri.013G046200 Populus trichocarpa HOM05D005617 ORTHO05D006847 1.2e-93 347.4 274 65.0
Aqoxy2G03651 Aquilegia oxysepala HOM05D005617 ORTHO05D006847 2.6e-93 346.3 296 60.8
Thecc.05G271700 Theobroma cacao HOM05D005617 ORTHO05D006847 2.6e-93 346.3 278 63.7
Gohir.A11G299400 Gossypium hirsutum HOM05D005617 ORTHO05D006847 4.5e-93 345.5 279 64.5
QL03p030835 Quercus lobata HOM05D005617 ORTHO05D006847 4.5e-93 345.5 268 63.8
Gorai.007G345400 Gossypium raimondii HOM05D005617 ORTHO05D006847 2.2e-92 343.2 279 63.8
Duzib177G1169 Durio zibethinus HOM05D005617 ORTHO05D006847 2.9e-92 342.8 265 65.7
TWI56G1032 Tripterygium wilfordii HOM05D005617 ORTHO05D006847 3.8e-92 342.4 253 65.6
CsaV3_1G036020 Cucumis sativus L. HOM05D005617 ORTHO05D006847 5.0e-92 342.0 252 67.5
HPP92_002964 Vanilla planifolia HOM05D005617 ORTHO05D006847 5.0e-92 342.0 252 66.7
Gohir.D11G314200 Gossypium hirsutum HOM05D005617 ORTHO05D006847 1.5e-91 340.5 279 63.4
Sed0027621 Sechium edule HOM05D005617 ORTHO05D006847 4.2e-91 339.0 264 64.0
VMungo0540G0455 Vigna mungo HOM05D005617 ORTHO05D006847 7.2e-91 338.2 243 67.9
PSO017G5929 Papaver somniferum HOM05D005617 ORTHO05D006847 9.4e-91 337.8 284 60.6
COL.COLO4_15469 Corchorus olitorius HOM05D005617 ORTHO05D006847 1.2e-90 337.4 244 68.9
THA.LOC104805778 Tarenaya hassleriana HOM05D005617 ORTHO05D006847 1.6e-90 337.0 254 65.7
Glyma.19G248200 Glycine max HOM05D005617 ORTHO05D006847 2.7e-90 336.3 246 65.9
PSO063G2686 Papaver somniferum HOM05D005617 ORTHO05D006847 2.7e-90 336.3 285 63.5
Phvul.006G105300 Phaseolus vulgaris HOM05D005617 ORTHO05D006847 2.7e-90 336.3 266 62.8
DCAR_023096 Daucus carota HOM05D005617 ORTHO05D006847 3.6e-90 335.9 253 64.4
Ah.06g191860 Amaranthus hybridus HOM05D005617 ORTHO05D006847 8.0e-90 334.7 270 61.1
Lj1g0025948 Lotus japonicus HOM05D005617 ORTHO05D006847 1.4e-89 334.0 279 61.6
Glyma.03G250700 Glycine max HOM05D005617 ORTHO05D006847 1.2e-88 330.9 243 65.8
arahy.Tifrunner.gnm1.ann1.9NRB0Q Arachis hypogaea HOM05D005617 ORTHO05D006847 2.0e-88 330.1 222 71.6
arahy.Tifrunner.gnm1.ann1.X65E39 Arachis hypogaea HOM05D005617 ORTHO05D006847 3.4e-88 329.3 222 71.2
RcHm_v2.0_Chr3g0449811 Rosa chinensis HOM05D005617 ORTHO05D006847 3.4e-88 329.3 243 65.4
Rhsim09G0137600 Rhododendron simsii HOM05D005617 ORTHO05D006847 5.7e-88 328.6 277 59.9
FAN14G0582 Fragaria x ananassa HOM05D005617 ORTHO05D006847 1.3e-87 327.4 243 65.4
unitig_32.g10679 Utricularia gibba HOM05D005617 ORTHO05D006847 6.3e-87 325.1 227 70.5
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.4e-86 323.2 242 64.9
Potri.019G018300 Populus trichocarpa HOM05D005617 ORTHO05D006847 2.4e-86 323.2 253 64.4
Cfa006341 Carpinus fangiana HOM05D005617 ORTHO05D006548 4.1e-86 322.4 211 72.5
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.7e-85 319.7 242 64.5
Carub.0001s0800 Capsella rubella HOM05D005617 ORTHO05D006847 1.3e-84 317.4 222 69.8
Sp1g07300 Schrenkiella parvula HOM05D005617 ORTHO05D006847 2.9e-84 316.2 222 68.9
Thhalv10008167m.g Eutrema salsugineum HOM05D005617 ORTHO05D006847 3.8e-84 315.8 222 69.4
CARHR008550 Cardamine hirsuta HOM05D005617 ORTHO05D006847 5.0e-84 315.5 300 58.3
BraA06t23768Z Brassica rapa HOM05D005617 ORTHO05D006847 6.5e-84 315.1 222 68.5
BcaC05g24795 Brassica carinata HOM05D005617 ORTHO05D006847 1.1e-83 314.3 222 68.0
BolC5t29432H Brassica oleracea HOM05D005617 ORTHO05D006847 1.1e-83 314.3 222 68.0
C05p06720 Brassica napus HOM05D005617 ORTHO05D006847 1.5e-83 313.9 222 68.0
BcaB07g34105 Brassica carinata HOM05D005617 ORTHO05D006847 2.5e-83 313.2 222 68.5
Psat3g006600 Pisum sativum HOM05D005617 ORTHO05D006847 4.2e-83 312.4 270 57.4
AL1G19070 Arabidopsis lyrata HOM05D005617 ORTHO05D006847 1.2e-82 310.8 222 68.9
Lalb_Chr04g0262061 Lupinus albus HOM05D005617 ORTHO05D006847 2.1e-82 310.1 222 66.7
ATR0736G212 Amborella trichopoda HOM05D005617 ORTHO05D006847 2.7e-82 309.7 202 72.3
AT1G08640 Arabidopsis thaliana HOM05D005617 ORTHO05D006847 4.7e-82 308.9 222 68.5
TPR.G6961 Trifolium pratense HOM05D005617 ORTHO05D006847 8.0e-82 308.1 272 56.2
BcaB03g13320 Brassica carinata HOM05D005617 ORTHO05D006847 1.8e-81 307.0 222 68.9
FAN14G1026 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.0e-80 303.5 222 66.2
Aa31sc110G20 Aethionema arabicum HOM05D005617 ORTHO05D006847 1.7e-79 300.4 229 63.8
A06p05600 Brassica napus HOM05D005617 ORTHO05D006847 9.1e-78 294.7 201 70.6
Hund22155 Selenicereus undatus HOM05D005617 ORTHO05D006847 5.9e-77 292.0 222 66.2
Medtr7g115670 Medicago truncatula HOM05D005617 ORTHO05D006847 1.0e-76 291.2 201 67.7
CDE04G1987 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 3.8e-76 289.3 252 59.9
AUR62040935 Chenopodium quinoa HOM05D005617 ORTHO05D006847 1.1e-75 287.7 183 74.9
Sabra13G0042400 Salix brachista HOM05D005617 ORTHO05D006847 5.5e-75 285.4 297 54.5
SEGI_39921 Sequoiadendron giganteum HOM05D005617 ORTHO05D006847 9.5e-75 284.6 243 55.6
Haze_04439 Corylus avellana HOM05D005617 ORTHO05D006847 1.4e-73 280.8 240 59.6
FvH4_6g01960 Fragaria vesca HOM05D005617 ORTHO05D006847 1.1e-70 271.2 200 66.5
ClCG03G000920 Citrullus lanatus HOM05D005617 ORTHO05D006847 1.4e-70 270.8 173 76.3
Zm00001eb261540 Zea mays HOM05D005617 ORTHO05D006847 2.4e-70 270.0 222 56.8
MELO3C020566.2 Cucumis melo HOM05D005617 ORTHO05D006847 1.2e-69 267.7 267 54.7
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 2.0e-69 266.9 201 65.7
Atru.chr2.967 Acer truncatum HOM05D005617 ORTHO05D006847 5.9e-69 265.4 175 73.7
Os08g0127600 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.3e-68 263.5 222 56.8
Nn1g08261 Nelumbo nucifera HOM05D005617 ORTHO05D006847 5.0e-68 262.3 241 58.5
SGA_v2.0_scaffold380G50362 Striga asiatica HOM05D005617 ORTHO05D006847 1.1e-67 261.2 283 52.7
Mapoly0036s0041 Marchantia polymorpha HOM05D005617 ORTHO05D006847 1.2e-66 257.7 223 56.5
Os10g0478100 Oryza sativa ssp. japonica HOM05D005617 ORTHO05D006847 2.1e-66 256.9 222 55.9
SMO116G0251 Selaginella moellendorffii HOM05D005617 ORTHO05D006847 1.2e-64 251.1 222 54.1
AagrBONN_evm.TU.Sc2ySwM_344.3205 Anthoceros agrestis HOM05D005617 ORTHO05D006847 1.4e-62 244.2 221 53.8
Pp3c23_15250 Physcomitrium patens HOM05D005617 ORTHO05D006847 9.5e-59 231.5 233 50.6
Ca_09461_v3 Cicer arietinum L. HOM05D005617 ORTHO05D006847 2.0e-56 223.8 164 62.2
vmacro10358 Vaccinium macrocarpon HOM05D005617 ORTHO05D006847 1.9e-54 217.2 253 46.6
Zm00001eb173360 Zea mays HOM05D005617 ORTHO05D006847 2.4e-54 216.9 177 57.1
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 3.9e-52 209.5 138 70.3
C08p12050 Brassica napus HOM05D005617 ORTHO05D006847 1.1e-46 191.4 232 49.6
CDE04G2248 Ceratophyllum demersum HOM05D005617 ORTHO05D006847 6.6e-44 182.2 112 76.8
TAR365G0454 Trochodendron aralioides HOM05D005617 ORTHO05D006847 9.6e-43 178.3 172 54.7
Cpa.g.sc162.39 Carica papaya HOM05D005617 ORTHO05D006847 1.4e-41 174.5 146 58.9
CBR_g63068 Chara braunii HOM05D005617 ORTHO05D006847 4.6e-37 159.5 222 40.5
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.1e-35 154.8 130 62.3
TPR.G11236 Trifolium pratense HOM05D005617 ORTHO05D006847 1.1e-27 128.3 99 57.6
Cpa.g.c45301 Carica papaya HOM05D005617 ORTHO05D006847 2.1e-26 124.0 73 83.6
BcaC07g38407 Brassica carinata HOM05D005617 ORTHO05D006847 2.8e-26 123.6 133 48.1
SHI23140 Sapria himalayana HOM05D005617 ORTHO05D001257 4.5e-24 116.3 177 35.6
C08p11620 Brassica napus HOM05D005617 ORTHO05D006847 1.4e-22 111.3 81 60.5
C08p11690 Brassica napus HOM05D005617 ORTHO05D006847 2.4e-22 110.5 81 59.3
C08p11650 Brassica napus HOM05D005617 ORTHO05D006847 1.2e-21 108.2 81 59.3
BolC8t48841H Brassica oleracea HOM05D005617 ORTHO05D006847 1.9e-19 100.9 82 58.5
PRCOL_00005829 Prasinoderma coloniale HOM05D005617 ORTHO05D006847 4.8e-18 96.3 196 33.2
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 1.4e-17 94.7 165 35.8
BcaC07g38438 Brassica carinata HOM05D005617 ORTHO05D006847 2.9e-15 87.0 80 56.2
Atru.chr2.966 Acer truncatum HOM05D005617 ORTHO05D006847 3.9e-12 76.6 54 68.5
MCO09G447 Micromonas commoda HOM05D005617 ORTHO05D006847 1.1e-11 75.1 228 31.6
BcaB01g02218 Brassica carinata HOM05D005617 ORTHO05D006847 1.3e-10 71.6 52 69.2
Rhsim04G0044500 Rhododendron simsii HOM05D005617 ORTHO05D000521 8.2e-10 68.9 76 48.7
Cre03.g171100 Chlamydomonas reinhardtii HOM05D005617 ORTHO05D006847 3.1e-09 67.0 173 30.1
TPR.G21937 Trifolium pratense HOM05D005617 ORTHO05D006847 5.3e-09 66.2 60 53.3
FvH4_6g01860 Fragaria vesca HOM05D005617 ORTHO05D006847 3.2e-06 57.0 59 47.5
FAN14G3066 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.2e-06 57.0 59 47.5
FAN14G4186 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.2e-06 57.0 59 47.5
FAN14G5978 Fragaria x ananassa HOM05D005617 ORTHO05D006847 3.2e-06 57.0 59 47.5
FAN09G3889 Fragaria x ananassa HOM05D005617 ORTHO05D006847 7.2e-06 55.8 59 45.8
TPR.G6979 Trifolium pratense HOM05D005617 ORTHO05D006847 9.3e-06 55.5 86 34.9


User provided reference genes

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