Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g009140.4 Solanum lycopersicum HOM05D004213 ORTHO05D005091 1.5e-127 459.5 227 100.0
Sopen04g004260 Solanum pennellii HOM05D004213 ORTHO05D005091 3.8e-99 365.2 177 98.9
Sopen09g030140 Solanum pennellii HOM05D004213 ORTHO05D005091 2.4e-98 362.5 177 97.7
PGSC0003DMG400031793 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.2e-98 362.1 177 97.2
PGSC0003DMG400032548 Solanum tuberosum HOM05D004213 ORTHO05D005091 9.3e-98 360.5 177 97.7
Solyc09g075370.3 Solanum lycopersicum HOM05D004213 ORTHO05D005091 3.5e-97 358.6 177 97.2
Nitab4.5_0000116g0380 Nicotiana tabacum HOM05D004213 ORTHO05D005091 3.4e-92 342.0 179 92.7
Nitab4.5_0007641g0010 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.4e-92 341.7 179 92.2
Nitab4.5_0001141g0050 Nicotiana tabacum HOM05D004213 ORTHO05D005091 4.3e-87 325.1 179 87.7
Peaxi162Scf00037g01020 Petunia axillaris HOM05D004213 ORTHO05D005091 4.6e-81 305.1 179 84.4
Migut.B01801 Erythranthe guttata HOM05D004213 ORTHO05D005091 6.0e-81 304.7 180 80.0
arahy.Tifrunner.gnm1.ann1.HWB48S Arachis hypogaea HOM05D004213 ORTHO05D005091 5.1e-80 301.6 180 80.6
arahy.Tifrunner.gnm1.ann1.LEY1JS Arachis hypogaea HOM05D004213 ORTHO05D005091 5.1e-80 301.6 180 80.6
ClCG09G006700 Citrullus lanatus HOM05D004213 ORTHO05D005091 5.1e-80 301.6 180 77.8
VMungo0540G0091 Vigna mungo HOM05D004213 ORTHO05D005091 1.9e-79 299.7 180 80.0
Rhsim07G0009900 Rhododendron simsii HOM05D004213 ORTHO05D005091 3.3e-79 298.9 180 80.0
Eucgr.C02275 Eucalyptus grandis HOM05D004213 ORTHO05D005091 1.3e-78 297.0 180 80.0
Dinv43865 Davidia involucrata HOM05D004213 ORTHO05D005091 3.7e-78 295.4 180 78.9
Oeu010628.1 Olea europaea HOM05D004213 ORTHO05D005091 3.7e-78 295.4 180 79.4
MELO3C015876.2 Cucumis melo HOM05D004213 ORTHO05D005091 1.1e-77 293.9 180 75.0
Ciclev10021940m.g Citrus clementina HOM05D004213 ORTHO05D005091 1.8e-77 293.1 180 76.7
TAR374G1598 Trochodendron aralioides HOM05D004213 ORTHO05D005091 1.8e-77 293.1 180 78.3
Atru.chr7.1501 Acer truncatum HOM05D004213 ORTHO05D005091 4.0e-77 292.0 180 77.8
Sed0018043 Sechium edule HOM05D004213 ORTHO05D005091 5.3e-77 291.6 180 74.4
vmacro17287 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 6.9e-77 291.2 180 78.3
GSVIVG01026970001 Vitis vinifera HOM05D004213 ORTHO05D005091 6.9e-77 291.2 180 77.2
Hma1.2p1_0623F.1_g191100 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 1.2e-76 290.4 180 77.2
Oeu004904.1 Olea europaea HOM05D004213 ORTHO05D005091 1.2e-76 290.4 180 77.2
CAN.G472.27 Capsicum annuum HOM05D004213 ORTHO05D005091 2.0e-76 289.7 158 89.2
Phvul.006G145900 Phaseolus vulgaris HOM05D004213 ORTHO05D005091 2.0e-76 289.7 180 76.7
Lalb_Chr17g0338991 Lupinus albus HOM05D004213 ORTHO05D005091 2.6e-76 289.3 180 77.2
FAN06G3506 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.4e-76 288.9 180 77.2
Lalb_Chr10g0096631 Lupinus albus HOM05D004213 ORTHO05D005091 4.5e-76 288.5 180 76.1
TWI09G0095 Tripterygium wilfordii HOM05D004213 ORTHO05D005091 4.5e-76 288.5 180 77.2
CsaV3_7G028460 Cucumis sativus L. HOM05D004213 ORTHO05D005091 5.8e-76 288.1 180 73.9
vmacro09727 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 5.8e-76 288.1 180 77.8
vmacro13225 Vaccinium macrocarpon HOM05D004213 ORTHO05D005091 5.8e-76 288.1 180 77.8
Medtr8g028485 Medicago truncatula HOM05D004213 ORTHO05D005091 7.6e-76 287.7 180 77.2
Actinidia20165 Actinidia chinensis HOM05D004213 ORTHO05D005091 1.0e-75 287.3 202 71.3
FvH4_7g21940 Fragaria vesca HOM05D004213 ORTHO05D005091 1.3e-75 287.0 180 76.7
Lj3g0016777 Lotus japonicus HOM05D004213 ORTHO05D005091 2.2e-75 286.2 180 76.7
CANSAT56G1246 Cannabis sativa HOM05D004213 ORTHO05D005091 3.8e-75 285.4 180 75.0
FAN01G2056 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.8e-75 285.4 180 76.7
RcHm_v2.0_Chr1g0366261 Rosa chinensis HOM05D004213 ORTHO05D005091 3.8e-75 285.4 180 76.1
Potri.002G164800 Populus trichocarpa HOM05D004213 ORTHO05D005091 4.9e-75 285.0 179 74.9
Ah.02g117780 Amaranthus hybridus HOM05D004213 ORTHO05D005091 6.5e-75 284.6 178 75.8
MD07G1193700 Malus domestica HOM05D004213 ORTHO05D005091 6.5e-75 284.6 178 78.7
MD07G1194000 Malus domestica HOM05D004213 ORTHO05D005091 6.5e-75 284.6 178 78.7
PGR142G0776 Punica granatum HOM05D004213 ORTHO05D005091 6.5e-75 284.6 180 75.0
Ca_09511_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.4e-74 283.5 180 75.0
Ca_30061_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 1.4e-74 283.5 180 75.0
Gorai.004G155200 Gossypium raimondii HOM05D004213 ORTHO05D005091 1.4e-74 283.5 179 77.1
TPR.G28293 Trifolium pratense HOM05D004213 ORTHO05D005091 1.9e-74 283.1 180 75.0
Medtr8g087440 Medicago truncatula HOM05D004213 ORTHO05D005091 2.5e-74 282.7 180 76.1
Hund26583 Selenicereus undatus HOM05D004213 ORTHO05D005091 2.5e-74 282.7 180 76.1
Gohir.D08G149400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 3.2e-74 282.3 179 76.5
PSO017G5376 Papaver somniferum HOM05D004213 ORTHO05D005091 3.2e-74 282.3 180 74.4
RcHm_v2.0_Chr3g0492131 Rosa chinensis HOM05D004213 ORTHO05D005091 3.2e-74 282.3 180 75.6
EL10Ac1g01391 Beta vulgaris HOM05D004213 ORTHO05D005091 5.5e-74 281.6 179 75.4
RcHm_v2.0_Chr3g0490801 Rosa chinensis HOM05D004213 ORTHO05D005091 5.5e-74 281.6 180 75.6
Thecc.01G352200 Theobroma cacao HOM05D004213 ORTHO05D005091 7.1e-74 281.2 179 76.5
PSO063G4449 Papaver somniferum HOM05D004213 ORTHO05D005091 1.6e-73 280.0 180 73.3
Psat5g297040 Pisum sativum HOM05D004213 ORTHO05D005091 1.6e-73 280.0 180 74.4
Psat4g157720 Pisum sativum HOM05D004213 ORTHO05D005091 2.1e-73 279.6 180 75.0
Duzib138G1303 Durio zibethinus HOM05D004213 ORTHO05D005091 2.7e-73 279.3 179 76.0
Sabra02G0146700 Salix brachista HOM05D004213 ORTHO05D005091 2.7e-73 279.3 178 73.6
HanXRQChr06g0170371 Helianthus annuus HOM05D004213 ORTHO05D005091 3.5e-73 278.9 180 75.6
AUR62017900 Chenopodium quinoa HOM05D004213 ORTHO05D005091 6.0e-73 278.1 179 72.6
Gohir.A04G053400 Gossypium hirsutum HOM05D004213 ORTHO05D005091 6.0e-73 278.1 179 75.4
Hma1.2p1_1013F.1_g247750 Hydrangea macrophylla HOM05D004213 ORTHO05D005091 6.0e-73 278.1 180 73.9
TPR.G7188 Trifolium pratense HOM05D004213 ORTHO05D005091 7.9e-73 277.7 180 74.4
MBI16_g00685_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.8e-72 276.6 180 74.4
SGA_v2.0_scaffold4G02277 Striga asiatica HOM05D004213 ORTHO05D005091 2.3e-72 276.2 223 62.3
ATR0751G024 Amborella trichopoda HOM05D004213 ORTHO05D005091 3.0e-72 275.8 180 72.8
Ca_03495_v3 Cicer arietinum L. HOM05D004213 ORTHO05D005091 3.0e-72 275.8 180 73.9
COL.COLO4_19238 Corchorus olitorius HOM05D004213 ORTHO05D005091 3.0e-72 275.8 195 70.8
Glyma.16G031500 Glycine max HOM05D004213 ORTHO05D005091 5.1e-72 275.0 180 75.0
unitig_0.g337 Utricularia gibba HOM05D004213 ORTHO05D005091 1.9e-71 273.1 179 73.2
FAN03G2999 Fragaria x ananassa HOM05D004213 ORTHO05D005091 2.5e-71 272.7 195 68.7
FAN10G1826 Fragaria x ananassa HOM05D004213 ORTHO05D005091 3.3e-71 272.3 195 68.7
THA.LOC104827605 Tarenaya hassleriana HOM05D004213 ORTHO05D005091 3.3e-71 272.3 180 72.2
CSS0029792 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 5.7e-71 271.6 181 75.1
CSS0049269 Camellia sinensis var. sinensis HOM05D004213 ORTHO05D005091 5.7e-71 271.6 181 75.1
MD10G1064600 Malus domestica HOM05D004213 ORTHO05D005091 1.3e-70 270.4 178 73.0
SalBow3G3674 Salvia bowleyana HOM05D004213 ORTHO05D005091 1.3e-70 270.4 181 72.4
MSTRG.17300 Avicennia marina HOM05D004213 ORTHO05D005091 1.6e-70 270.0 179 73.7
AUR62003587 Chenopodium quinoa HOM05D004213 ORTHO05D005091 8.2e-70 267.7 179 70.4
DCAR_025215 Daucus carota HOM05D004213 ORTHO05D005091 8.2e-70 267.7 178 70.8
AT1G14620 Arabidopsis thaliana HOM05D004213 ORTHO05D005091 3.1e-69 265.8 181 69.1
A03p25480 Brassica napus HOM05D004213 ORTHO05D005091 3.1e-69 265.8 181 69.1
Lj9A589G62 Lonicera japonica HOM05D004213 ORTHO05D005091 3.1e-69 265.8 178 73.0
BraA03t11766Z Brassica rapa HOM05D004213 ORTHO05D005091 4.1e-69 265.4 181 69.1
Thhalv10008660m.g Eutrema salsugineum HOM05D004213 ORTHO05D005091 5.3e-69 265.0 181 69.6
BraA04t18889Z Brassica rapa HOM05D005821 ORTHO05D006649 6.9e-69 264.6 181 69.1
Cfa003870 Carpinus fangiana HOM05D004213 ORTHO05D005091 6.9e-69 264.6 180 71.7
Os06g0300600 Oryza sativa ssp. japonica HOM05D004213 ORTHO05D005091 6.9e-69 264.6 177 70.1
Haze_15567 Corylus avellana HOM05D004213 ORTHO05D005091 9.0e-69 264.2 180 71.7
BcaB01g03237 Brassica carinata HOM05D004213 ORTHO05D005091 1.2e-68 263.8 181 69.1
Glyma.15G111800 Glycine max HOM05D004213 ORTHO05D005091 1.2e-68 263.8 180 71.7
Carub.0001s1438 Capsella rubella HOM05D004213 ORTHO05D005091 2.0e-68 263.1 181 68.5
AL1G26590 Arabidopsis lyrata HOM05D004213 ORTHO05D005091 4.5e-68 261.9 181 68.0
Glyma.09G007400 Glycine max HOM05D004213 ORTHO05D005091 5.8e-68 261.5 180 71.1
Sp1g12980 Schrenkiella parvula HOM05D004213 ORTHO05D005091 7.6e-68 261.2 181 68.0
Aa31LG1G27530 Aethionema arabicum HOM05D004213 ORTHO05D005091 1.3e-67 260.4 181 66.9
CARHR015120 Cardamine hirsuta HOM05D004213 ORTHO05D005091 1.3e-67 260.4 181 67.4
C04p72100 Brassica napus HOM05D005821 ORTHO05D006649 1.7e-67 260.0 181 66.3
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 1.7e-67 260.0 179 67.0
BcaC01g05093 Brassica carinata HOM05D004213 ORTHO05D005091 2.2e-67 259.6 181 67.4
BcaC02g07022 Brassica carinata HOM05D004213 ORTHO05D005091 2.2e-67 259.6 181 66.3
C03p30410 Brassica napus HOM05D004213 ORTHO05D005091 2.2e-67 259.6 181 67.4
Sp4g28190 Schrenkiella parvula HOM05D004213 ORTHO05D005091 2.9e-67 259.2 181 67.4
BolC3t15389H Brassica oleracea HOM05D004213 ORTHO05D005091 3.8e-67 258.8 181 67.4
CiPaw.02G035500 Carya illinoinensis HOM05D004213 ORTHO05D005091 6.5e-67 258.1 182 70.9
Zm00001eb381110 Zea mays HOM05D004213 ORTHO05D005091 5.5e-66 255.0 177 66.7
HPP92_022817 Vanilla planifolia HOM05D004213 ORTHO05D005091 1.6e-65 253.4 180 67.2
Gohir.A08G128100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 2.1e-65 253.1 177 71.8
Manes.05G029000 Manihot esculenta HOM05D004213 ORTHO05D005091 6.1e-65 251.5 178 67.4
Cc02_g38590 Coffea canephora HOM05D004213 ORTHO05D005091 1.3e-64 250.4 180 67.8
Nn1g07606 Nelumbo nucifera HOM05D004213 ORTHO05D005091 6.7e-64 248.1 180 68.3
CiPaw.01G067700 Carya illinoinensis HOM05D004213 ORTHO05D005091 3.3e-63 245.7 180 68.9
Gohir.D04G091100 Gossypium hirsutum HOM05D004213 ORTHO05D005091 9.7e-63 244.2 161 74.5
Aqoxy5G03866 Aquilegia oxysepala HOM05D004213 ORTHO05D005091 2.2e-62 243.0 180 65.0
Gorai.009G392100 Gossypium raimondii HOM05D004213 ORTHO05D005091 2.8e-62 242.7 168 72.0
Lsat_1_v5_gn_7_2701 Lactuca sativa HOM05D004213 ORTHO05D005091 1.4e-61 240.4 180 67.8
BolC4t28619H Brassica oleracea HOM05D005821 ORTHO05D005091 3.1e-61 239.2 203 59.1
ECA236G3941 Erigeron canadensis HOM05D004213 ORTHO05D005091 9.0e-61 237.7 180 66.7
DCAR_009468 Daucus carota HOM05D004213 ORTHO05D005091 7.7e-60 234.6 157 70.7
Lj9A590G54 Lonicera japonica HOM05D004213 ORTHO05D005091 1.6e-57 226.9 183 63.4
SEGI_36995 Sequoiadendron giganteum HOM05D004213 ORTHO05D005091 1.3e-54 217.2 181 58.0
Cpa.g.sc11.71 Carica papaya HOM05D004213 ORTHO05D005091 2.8e-54 216.1 133 78.2
Dinv32523 Davidia involucrata HOM05D004213 ORTHO05D005091 7.7e-52 208.0 132 75.8
FAN06G0959 Fragaria x ananassa HOM05D004213 ORTHO05D005091 6.5e-51 204.9 124 76.6
COL.COLO4_07824 Corchorus olitorius HOM05D004213 ORTHO05D005091 2.7e-49 199.5 185 57.8
Nn1g07699 Nelumbo nucifera HOM05D004213 ORTHO05D005091 3.3e-47 192.6 179 57.5
Rhsim09G0104800 Rhododendron simsii HOM05D004213 ORTHO05D005091 8.2e-46 188.0 133 69.9
Pp3c13_9680 Physcomitrium patens HOM05D004213 ORTHO05D005091 9.1e-45 184.5 181 51.4
MBI16_g10331_MAGBIO Magnolia biondii HOM05D004213 ORTHO05D005091 1.3e-43 180.6 120 73.3
Mapoly0025s0100 Marchantia polymorpha HOM05D004213 ORTHO05D005091 3.8e-43 179.1 180 52.2
Sc16g0003870 Simmondsia chinensis HOM05D004213 ORTHO05D005091 1.6e-41 173.7 101 81.2
AagrBONN_evm.TU.Sc2ySwM_228.381 Anthoceros agrestis HOM05D004213 ORTHO05D005091 4.7e-41 172.2 184 51.1
Medtr7g117435 Medicago truncatula HOM05D004213 ORTHO05D005091 4.7e-41 172.2 125 65.6
AagrBONN_evm.TU.Sc2ySwM_117.3677 Anthoceros agrestis HOM05D004213 ORTHO05D005091 2.3e-40 169.9 184 50.5
Atru.chr1.2758 Acer truncatum HOM05D004213 ORTHO05D005091 2.5e-34 149.8 90 78.9
EL10Ac6g15290 Beta vulgaris HOM05D004213 ORTHO05D012437 2.5e-34 149.8 97 71.1
C04p01920 Brassica napus HOM05D004213 ORTHO05D005091 1.4e-32 144.1 150 52.7
Prupe.2G231400 Prunus persica HOM05D004213 ORTHO05D005091 6.8e-32 141.7 89 75.3
MD05G1056600 Malus domestica HOM05D004213 ORTHO05D005091 1.5e-31 140.6 156 49.4
PGSC0003DMG402011505 Solanum tuberosum HOM05D004213 ORTHO05D005091 3.1e-29 132.9 66 95.5
CBR_g37539 Chara braunii HOM05D004213 ORTHO05D005091 5.4e-29 132.1 178 39.9
SMO271G0103 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 5.4e-29 132.1 149 45.6
CARHR141400 Cardamine hirsuta HOM05D004213 ORTHO05D005091 2.7e-28 129.8 131 52.7
SHI13371 Sapria himalayana HOM05D004213 ORTHO05D005091 2.5e-26 123.2 104 62.5
BcaC02g12495 Brassica carinata HOM05D004213 ORTHO05D005091 1.4e-24 117.5 89 62.9
SMO308G0077 Selaginella moellendorffii HOM05D004213 ORTHO05D005091 3.1e-21 106.3 127 42.5
MCO04G325 Micromonas commoda HOM05D004213 ORTHO05D005091 2.9e-19 99.8 165 33.3
Cre03.g193550 Chlamydomonas reinhardtii HOM05D004213 ORTHO05D005091 2.4e-13 80.1 178 31.5
VMungo0331G0027 Vigna mungo HOM05D004213 ORTHO05D005091 7.0e-13 78.6 46 73.9
Cfa024785 Carpinus fangiana HOM05D004213 ORTHO05D122664 5.0e-11 72.4 138 36.2
Rhsim07G0218600 Rhododendron simsii HOM05D004213 ORTHO05D339259 1.8e-08 63.9 40 70.0
RcHm_v2.0_Chr1g0366151 Rosa chinensis HOM05D004213 ORTHO05D005091 4.9e-06 55.8 40 62.5


User provided reference genes

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