Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 2.7e-198 695.3 389 100.0
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 6.3e-195 684.1 389 99.0
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 7.7e-185 650.6 389 95.1
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.4e-170 603.2 389 88.7
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 9.2e-146 520.8 329 84.8
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 3.1e-141 505.8 317 84.9
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 3.5e-121 439.1 325 74.5
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 6.4e-107 391.7 418 61.0
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 9.3e-106 387.9 401 62.1
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 5.3e-101 372.1 408 59.6
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 3.2e-98 362.8 372 57.5
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 2.1e-97 360.1 408 59.6
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 6.2e-94 348.6 409 57.2
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 1.1e-93 347.8 414 54.8
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 1.0e-91 341.3 336 60.7
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 2.9e-91 339.7 413 57.4
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 3.2e-90 336.3 413 54.5
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 4.2e-90 335.9 411 53.8
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 4.2e-90 335.9 423 55.3
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.5e-89 332.8 415 53.5
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 2.3e-88 330.1 419 54.9
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 5.1e-88 328.9 409 54.3
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 1.9e-87 327.0 389 56.0
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 4.3e-87 325.9 420 54.8
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 4.3e-87 325.9 384 52.1
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 9.6e-87 324.7 376 54.0
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 9.6e-87 324.7 406 55.4
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 1.3e-86 324.3 427 54.3
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.6e-86 323.9 414 54.3
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 1.6e-86 323.9 346 63.0
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 3.7e-86 322.8 420 54.8
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 1.4e-85 320.9 385 53.0
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.8e-85 320.5 414 54.1
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.4e-85 320.1 420 54.3
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 6.9e-85 318.5 434 52.1
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 9.0e-85 318.2 416 54.1
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 1.2e-84 317.8 264 65.2
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 4.5e-84 315.8 414 53.1
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 5.8e-84 315.5 372 54.0
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 1.3e-83 314.3 331 55.9
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 1.7e-83 313.9 411 52.3
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 2.2e-83 313.5 424 52.6
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 2.2e-83 313.5 387 51.9
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 2.2e-83 313.5 445 47.9
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 3.8e-83 312.8 406 53.2
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 2.5e-82 310.1 373 51.7
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 7.1e-82 308.5 402 53.5
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 4.6e-81 305.8 409 53.5
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 4.6e-81 305.8 411 51.1
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 6.1e-81 305.4 442 48.0
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 3.9e-80 302.8 394 52.8
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 6.7e-80 302.0 421 50.8
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 1.9e-79 300.4 400 53.5
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 3.3e-79 299.7 329 54.7
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 7.4e-79 298.5 325 53.5
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.6e-78 297.4 358 53.6
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 2.2e-78 297.0 414 51.0
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 2.8e-78 296.6 414 51.4
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 4.8e-78 295.8 444 46.2
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 6.3e-78 295.4 425 48.9
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 4.1e-77 292.7 392 52.6
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 9.0e-77 291.6 412 50.0
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 1.2e-76 291.2 413 48.2
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 3.4e-76 289.7 401 52.9
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 4.5e-76 289.3 519 44.9
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 5.9e-76 288.9 440 47.7
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 8.5e-75 285.0 398 53.3
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 1.4e-74 284.3 430 48.1
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 1.4e-74 284.3 247 63.6
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 1.2e-73 281.2 440 48.4
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 1.0e-72 278.1 385 51.2
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 7.4e-71 271.9 361 50.4
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 3.7e-70 269.6 252 62.7
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 4.5e-68 262.7 405 43.7
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 8.5e-67 258.5 345 53.3
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 9.4e-66 255.0 416 46.4
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 7.9e-65 251.9 396 46.7
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 7.9e-65 251.9 394 49.5
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.9e-64 249.6 402 49.3
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 5.1e-64 249.2 421 46.6
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 4.4e-63 246.1 403 46.7
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 5.3e-61 239.2 409 43.8
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 7.0e-61 238.8 232 59.5
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 1.2e-60 238.0 414 47.6
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 4.5e-60 236.1 396 46.7
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 1.0e-59 235.0 388 45.4
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 1.0e-59 235.0 394 42.6
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 1.7e-59 234.2 390 47.4
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 3.8e-59 233.0 412 46.8
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 8.5e-59 231.9 377 42.4
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 1.5e-58 231.1 388 45.1
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.2e-57 228.0 226 58.8
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 1.6e-57 227.6 262 52.3
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 1.6e-57 227.6 262 52.3
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 6.1e-57 225.7 395 45.1
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.0e-56 223.0 400 46.8
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 4.0e-56 223.0 402 45.0
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 1.1e-55 221.5 399 48.1
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 2.6e-55 220.3 421 43.9
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 3.3e-55 219.9 346 43.6
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 3.7e-54 216.5 398 46.2
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 8.2e-54 215.3 396 41.9
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 5.3e-53 212.6 325 44.0
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 9.1e-53 211.8 315 48.9
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 9.1e-53 211.8 228 53.1
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 1.6e-52 211.1 389 45.5
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 2.6e-52 210.3 234 55.6
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 1.3e-51 208.0 390 42.8
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 3.8e-51 206.5 395 45.1
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 1.9e-50 204.1 398 44.5
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 6.1e-49 199.1 395 42.0
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.4e-48 198.0 255 53.3
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 4.1e-45 186.4 363 40.8
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 1.3e-43 181.4 221 48.0
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 3.4e-39 166.8 264 40.2
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 1.1e-37 161.8 375 35.5
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.8e-37 161.0 382 41.9
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 3.5e-36 156.8 261 39.1
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 2.3e-35 154.1 269 40.1
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 3.8e-35 153.3 310 39.0
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 9.8e-23 112.1 244 46.3
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 1.7e-22 111.3 143 48.3
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 2.3e-19 100.9 85 58.8
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 2.5e-18 97.4 234 37.6
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 6.8e-16 89.4 143 43.4
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 1.5e-15 88.2 179 39.1
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.1e-13 82.0 94 51.1
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 1.2e-12 78.6 184 28.8
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 1.6e-12 78.2 84 61.9
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 3.3e-10 70.5 105 37.1
Lsat_1_v5_gn_5_14961 Lactuca sativa HOM05D004981 ORTHO05D005635 1.2e-09 68.6 149 41.6
CDE10G1193 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 4.7e-09 66.6 84 52.4
Lsat_1_v5_gn_4_93920 Lactuca sativa HOM05D004981 ORTHO05D005635 1.8e-08 64.7 159 43.4
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 4.0e-08 63.5 137 36.5
VMungo1383G0650 Vigna mungo HOM05D004981 ORTHO05D005635 1.5e-07 61.6 158 35.4
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 9.9e-07 58.9 68 45.6


User provided reference genes

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