Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g009010.2 Solanum lycopersicum HOM05D004717 ORTHO05D005636 2.4e-110 402.1 198 100.0
PGSC0003DMG400011510 Solanum tuberosum HOM05D004717 ORTHO05D005636 1.3e-108 396.4 198 98.5
CAN.G274.13 Capsicum annuum HOM05D004717 ORTHO05D005636 3.9e-100 368.2 197 89.8
Peaxi162Scf00681g00024 Petunia axillaris HOM05D004717 ORTHO05D005636 2.5e-99 365.5 197 89.3
Nitab4.5_0004808g0010 Nicotiana tabacum HOM05D004717 ORTHO05D005636 7.3e-99 364.0 195 90.3
Nitab4.5_0004979g0110 Nicotiana tabacum HOM05D004717 ORTHO05D005636 1.2e-98 363.2 197 89.3
Cc11_g03470 Coffea canephora HOM05D004717 ORTHO05D005636 2.4e-89 332.4 198 77.3
CSS0046676 Camellia sinensis var. sinensis HOM05D004717 ORTHO05D005636 1.3e-87 326.6 196 75.5
Rhsim02G0075200 Rhododendron simsii HOM05D004717 ORTHO05D005636 8.4e-87 323.9 198 71.7
vmacro15638 Vaccinium macrocarpon HOM05D004717 ORTHO05D005636 2.4e-86 322.4 197 72.6
Thecc.02G155400 Theobroma cacao HOM05D004717 ORTHO05D005636 3.2e-86 322.0 197 77.2
TWI74G1267 Tripterygium wilfordii HOM05D004717 ORTHO05D005636 9.3e-86 320.5 198 74.7
Duzib132G0983 Durio zibethinus HOM05D004717 ORTHO05D005636 3.5e-85 318.5 197 74.6
Dinv02673 Davidia involucrata HOM05D004717 ORTHO05D005636 4.6e-85 318.2 197 74.1
Lj6P708T54 Lonicera japonica HOM05D004717 ORTHO05D005636 1.0e-84 317.0 198 74.2
Eucgr.G02601 Eucalyptus grandis HOM05D004717 ORTHO05D005636 1.3e-84 316.6 198 72.2
MD16G1003900 Malus domestica HOM05D004717 ORTHO05D005636 3.0e-84 315.5 198 73.2
CiPaw.06G062200 Carya illinoinensis HOM05D004717 ORTHO05D005636 6.6e-84 314.3 198 71.7
Manes.08G039100 Manihot esculenta HOM05D004717 ORTHO05D005636 1.5e-83 313.2 197 71.6
Oeu033041.1 Olea europaea HOM05D004717 ORTHO05D005636 1.5e-83 313.2 198 71.7
Prupe.1G348900 Prunus persica HOM05D004717 ORTHO05D005636 1.5e-83 313.2 198 72.2
Oeu003437.1 Olea europaea HOM05D004717 ORTHO05D005636 5.6e-83 311.2 198 70.7
PGR142G4258 Punica granatum HOM05D004717 ORTHO05D005636 5.6e-83 311.2 196 71.4
Ah.01g024100 Amaranthus hybridus HOM05D004717 ORTHO05D005636 9.6e-83 310.5 198 71.7
Gorai.008G146900 Gossypium raimondii HOM05D004717 ORTHO05D005636 1.6e-82 309.7 197 71.6
RcHm_v2.0_Chr4g0446911 Rosa chinensis HOM05D004717 ORTHO05D005636 1.6e-82 309.7 198 73.2
Gohir.A12G132100 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.1e-82 309.3 198 71.7
QL04p036464 Quercus lobata HOM05D004717 ORTHO05D005636 2.1e-82 309.3 196 74.0
MSTRG.7889 Avicennia marina HOM05D004717 ORTHO05D005636 2.8e-82 308.9 198 71.2
Hma1.2p1_0513F.1_g169470 Hydrangea macrophylla HOM05D004717 ORTHO05D005636 2.8e-82 308.9 197 74.1
GSVIVG01038782001 Vitis vinifera HOM05D004717 ORTHO05D005636 3.6e-82 308.5 197 73.6
AUR62012906 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.8e-82 308.1 198 73.7
FAN12G1282 Fragaria x ananassa HOM05D004717 ORTHO05D005636 6.2e-82 307.8 198 73.2
Eucgr.G02666 Eucalyptus grandis HOM05D004717 ORTHO05D005636 8.1e-82 307.4 198 70.7
QL04p036080 Quercus lobata HOM05D004717 ORTHO05D005636 1.1e-81 307.0 196 73.0
MD13G1003500 Malus domestica HOM05D004717 ORTHO05D005636 2.4e-81 305.8 198 70.7
GSVIVG01026135001 Vitis vinifera HOM05D004717 ORTHO05D005636 3.1e-81 305.4 198 70.7
Atru.chr11.1095 Acer truncatum HOM05D004717 ORTHO05D005636 4.0e-81 305.1 197 68.5
Potri.005G089500 Populus trichocarpa HOM05D004717 ORTHO05D005636 6.9e-81 304.3 198 71.7
Potri.007G074500 Populus trichocarpa HOM05D004717 ORTHO05D005636 9.0e-81 303.9 198 70.2
PGR142G2311 Punica granatum HOM05D004717 ORTHO05D005636 9.0e-81 303.9 198 67.7
Migut.L01402 Erythranthe guttata HOM05D004717 ORTHO05D005636 2.0e-80 302.8 198 69.2
Lj5g0015714 Lotus japonicus HOM05D004717 ORTHO05D005636 2.0e-80 302.8 198 70.2
THA.LOC104800704 Tarenaya hassleriana HOM05D004717 ORTHO05D005636 2.6e-80 302.4 197 68.0
Sabra07G0063200 Salix brachista HOM05D004717 ORTHO05D005636 3.4e-80 302.0 197 71.1
EL10Ac9g21225 Beta vulgaris HOM05D004717 ORTHO05D005636 5.8e-80 301.2 198 68.7
Psat1g123480 Pisum sativum HOM05D004717 ORTHO05D005636 1.7e-79 299.7 198 70.7
Sed0025396 Sechium edule HOM05D004717 ORTHO05D005636 2.2e-79 299.3 197 70.1
HanXRQChr08g0237151 Helianthus annuus HOM05D004717 ORTHO05D005636 3.8e-79 298.5 197 69.5
SGA_v2.0_scaffold62G21625 Striga asiatica HOM05D004717 ORTHO05D005636 3.8e-79 298.5 196 68.4
CiPaw.05G171400 Carya illinoinensis HOM05D004717 ORTHO05D005636 2.4e-78 295.8 198 69.2
Haze_11783 Corylus avellana HOM05D004717 ORTHO05D005636 2.4e-78 295.8 195 69.7
Lalb_Chr24g0398391 Lupinus albus HOM05D004717 ORTHO05D005636 2.4e-78 295.8 198 70.2
MELO3C022525.2 Cucumis melo HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 69.2
ECA247G4036 Erigeron canadensis HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 68.2
Phvul.004G144800 Phaseolus vulgaris HOM05D004717 ORTHO05D005636 4.2e-78 295.0 198 67.2
TPR.G28016 Trifolium pratense HOM05D004717 ORTHO05D005636 5.4e-78 294.7 198 70.2
Glyma.16G218800 Glycine max HOM05D004717 ORTHO05D005636 7.1e-78 294.3 198 69.2
Lsat_1_v5_gn_9_25720 Lactuca sativa HOM05D004717 ORTHO05D005636 9.3e-78 293.9 198 67.7
Sed0013821 Sechium edule HOM05D004717 ORTHO05D005636 1.2e-77 293.5 198 68.2
CiPaw.05G171500 Carya illinoinensis HOM05D004717 ORTHO05D005636 1.6e-77 293.1 198 70.2
CsaV3_6G005870 Cucumis sativus L. HOM05D004717 ORTHO05D005636 1.6e-77 293.1 198 68.7
DCAR_027608 Daucus carota HOM05D004717 ORTHO05D005636 1.6e-77 293.1 183 73.8
Lj2g0014996 Lotus japonicus HOM05D004717 ORTHO05D005636 1.6e-77 293.1 198 68.7
Lj6P714T12 Lonicera japonica HOM05D004717 ORTHO05D005636 2.7e-77 292.4 183 74.3
SGA_v2.0_scaffold8G04231 Striga asiatica HOM05D004717 ORTHO05D005636 3.5e-77 292.0 198 66.7
AUR62001133 Chenopodium quinoa HOM05D004717 ORTHO05D005636 4.6e-77 291.6 196 68.9
arahy.Tifrunner.gnm1.ann1.8YZR55 Arachis hypogaea HOM05D004717 ORTHO05D005636 6.0e-77 291.2 198 68.2
arahy.Tifrunner.gnm1.ann1.TS1LPS Arachis hypogaea HOM05D004717 ORTHO05D005636 6.0e-77 291.2 198 68.2
Ciclev10016775m.g Citrus clementina HOM05D004717 ORTHO05D005636 6.0e-77 291.2 198 66.2
Sc08g0003750 Simmondsia chinensis HOM05D004717 ORTHO05D005636 6.0e-77 291.2 197 68.0
Nn2g12497 Nelumbo nucifera HOM05D004717 ORTHO05D005636 7.9e-77 290.8 192 67.2
Lj3g0022258 Lotus japonicus HOM05D004717 ORTHO05D005636 1.7e-76 289.7 198 69.2
Gohir.D12G135700 Gossypium hirsutum HOM05D004717 ORTHO05D005636 2.3e-76 289.3 183 71.6
Medtr6g075160 Medicago truncatula HOM05D004717 ORTHO05D005636 3.0e-76 288.9 198 68.2
unitig_8.g3169 Utricularia gibba HOM05D004717 ORTHO05D005636 6.6e-76 287.7 198 66.2
Aqoxy6G00094 Aquilegia oxysepala HOM05D004717 ORTHO05D005636 1.1e-75 287.0 194 64.9
AL6G34580 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 1.1e-75 287.0 197 66.5
Thhalv10014725m.g Eutrema salsugineum HOM05D004717 ORTHO05D005636 1.5e-75 286.6 198 67.7
Carub.0006s2109 Capsella rubella HOM05D004717 ORTHO05D005636 1.9e-75 286.2 197 66.0
PSO782G0831 Papaver somniferum HOM05D004717 ORTHO05D005636 1.9e-75 286.2 191 68.6
VMungo0464G0417 Vigna mungo HOM05D004717 ORTHO05D005636 3.3e-75 285.4 198 65.2
Aa31LG3G18230 Aethionema arabicum HOM05D006471 ORTHO05D005636 4.3e-75 285.0 197 66.5
EL10Ac7g17906 Beta vulgaris HOM05D004717 ORTHO05D005636 7.3e-75 284.3 187 69.5
AT5G08335 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 9.6e-75 283.9 198 66.2
ClCG06G000120 Citrullus lanatus HOM05D004717 ORTHO05D005636 1.3e-74 283.5 188 69.7
MBI14_g08135_MAGBIO Magnolia biondii HOM05D004717 ORTHO05D005636 1.3e-74 283.5 196 67.3
Carub.0006s0723 Capsella rubella HOM05D004717 ORTHO05D005636 1.6e-74 283.1 198 65.7
TPR.G9035 Trifolium pratense HOM05D004717 ORTHO05D005636 1.6e-74 283.1 198 67.2
GSVIVG01038778001 Vitis vinifera HOM05D004717 ORTHO05D005636 2.1e-74 282.7 198 67.7
AT5G23320 Arabidopsis thaliana HOM05D004717 ORTHO05D005636 2.8e-74 282.3 197 65.0
CARHR190220 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.8e-74 282.3 191 66.5
CARHR204740 Cardamine hirsuta HOM05D004717 ORTHO05D005636 2.8e-74 282.3 198 66.2
Migut.E00157 Erythranthe guttata HOM05D004717 ORTHO05D005636 3.6e-74 282.0 195 66.2
AL6G18770 Arabidopsis lyrata HOM05D004717 ORTHO05D005636 4.8e-74 281.6 198 65.2
Gohir.A11G227800 Gossypium hirsutum HOM05D004717 ORTHO05D005636 1.1e-73 280.4 184 69.0
Duzib177G0848 Durio zibethinus HOM05D004717 ORTHO05D005636 1.8e-73 279.6 186 71.5
Thecc.05G241200 Theobroma cacao HOM05D004717 ORTHO05D005636 1.8e-73 279.6 186 70.4
Ah.08g214600 Amaranthus hybridus HOM05D004717 ORTHO05D005636 3.1e-73 278.9 194 69.1
Gohir.D11G240300 Gossypium hirsutum HOM05D004717 ORTHO05D005636 5.3e-73 278.1 184 69.0
Gorai.007G253700 Gossypium raimondii HOM05D004717 ORTHO05D005636 5.3e-73 278.1 184 69.0
BraA03t09724Z Brassica rapa HOM05D004717 ORTHO05D005636 9.0e-73 277.3 198 64.1
BcaB01g05612 Brassica carinata HOM05D004717 ORTHO05D005636 2.0e-72 276.2 198 66.2
A03p03770 Brassica napus HOM05D004717 ORTHO05D005636 4.5e-72 275.0 196 63.3
CDE02G0493 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 4.5e-72 275.0 198 63.6
C03p04250 Brassica napus HOM05D004717 ORTHO05D005636 7.6e-72 274.2 198 63.6
BolC3t12957H Brassica oleracea HOM05D004717 ORTHO05D005636 7.6e-72 274.2 198 63.6
Duzib106G0072 Durio zibethinus HOM05D004717 ORTHO05D005636 4.9e-71 271.6 186 68.8
CANSAT11G2572 Cannabis sativa HOM05D004717 ORTHO05D005636 1.4e-70 270.0 199 63.8
Sc17g0002110 Simmondsia chinensis HOM05D004717 ORTHO05D005636 2.4e-70 269.2 191 66.0
HanXRQChr01g0011051 Helianthus annuus HOM05D004717 ORTHO05D005636 1.0e-68 263.8 198 64.1
Sp6g34610 Schrenkiella parvula HOM05D004717 ORTHO05D005636 5.1e-68 261.5 178 68.0
SHI07248 Sapria himalayana HOM05D004717 ORTHO05D005636 6.7e-68 261.2 198 61.1
Lsat_1_v5_gn_5_170960 Lactuca sativa HOM05D004717 ORTHO05D005636 2.5e-67 259.2 198 61.6
Lj3P847T27 Lonicera japonica HOM05D004717 ORTHO05D005636 3.3e-67 258.8 183 67.8
HPP92_018371 Vanilla planifolia HOM05D004717 ORTHO05D005636 7.4e-67 257.7 198 62.1
Lalb_Chr16g0386851 Lupinus albus HOM05D004717 ORTHO05D005636 1.6e-66 256.5 196 63.3
Actinidia35903 Actinidia chinensis HOM05D004717 ORTHO05D005636 9.0e-65 250.8 183 65.6
PSO170G2864 Papaver somniferum HOM05D004717 ORTHO05D005636 1.3e-63 246.9 162 71.0
Cpa.g.sc59.26 Carica papaya HOM05D004717 ORTHO05D005636 6.5e-63 244.6 190 58.9
AUR62011721 Chenopodium quinoa HOM05D004717 ORTHO05D005636 6.5e-63 244.6 143 76.9
Sopen04g004190 Solanum pennellii HOM05D004717 ORTHO05D005636 4.6e-61 238.4 114 99.1
DCAR_023472 Daucus carota HOM05D004717 ORTHO05D005636 1.9e-59 233.0 144 75.0
CDE04G3142 Ceratophyllum demersum HOM05D004717 ORTHO05D005636 9.6e-59 230.7 169 64.5
HanXRQChr17g0556721 Helianthus annuus HOM05D004717 ORTHO05D005636 1.3e-58 230.3 156 68.6
Aa31LG11G2780 Aethionema arabicum HOM05D004717 ORTHO05D005636 3.1e-57 225.7 144 67.4
Pp3c3_35430 Physcomitrium patens HOM05D004717 ORTHO05D005636 4.5e-56 221.9 193 52.8
SMO117G0139 Selaginella moellendorffii HOM05D004717 ORTHO05D005636 3.8e-55 218.8 187 55.6
Rhsim02G0074800 Rhododendron simsii HOM05D004717 ORTHO05D005636 5.5e-54 214.9 197 51.3
ATR0580G192 Amborella trichopoda HOM05D004717 ORTHO05D005636 9.3e-54 214.2 144 64.6
Zm00001eb144100 Zea mays HOM05D004717 ORTHO05D005636 1.2e-53 213.8 156 62.2
Mapoly0062s0094 Marchantia polymorpha HOM05D004717 ORTHO05D005636 1.9e-51 206.5 181 52.5
TAR381G0283 Trochodendron aralioides HOM05D004717 ORTHO05D005636 8.8e-44 181.0 126 65.1
SalBow2G2042 Salvia bowleyana HOM05D004717 ORTHO05D005636 9.7e-43 177.6 199 47.2
COL.COLO4_20086 Corchorus olitorius HOM05D004717 ORTHO05D005636 2.8e-42 176.0 98 77.6
Glyma.09G169200 Glycine max HOM05D004717 ORTHO05D005636 4.8e-42 175.3 198 48.0
MCO05G386 Micromonas commoda HOM05D004717 ORTHO05D005636 1.8e-36 156.8 181 43.1
PRCOL_00002165 Prasinoderma coloniale HOM05D004717 ORTHO05D005636 1.1e-33 147.5 180 45.0
Haze_27496 Corylus avellana HOM05D004717 ORTHO05D005636 1.4e-33 147.1 185 45.9
Hund05579 Selenicereus undatus HOM05D004717 ORTHO05D005636 1.6e-24 117.1 120 49.2
SEGI_39005 Sequoiadendron giganteum HOM05D004717 ORTHO05D005636 1.3e-23 114.0 74 62.2
Cfa021666 Carpinus fangiana HOM05D004717 ORTHO05D005636 6.5e-23 111.7 179 35.8
AagrBONN_evm.TU.Sc2ySwM_344.2327 Anthoceros agrestis HOM05D004717 ORTHO05D005636 1.9e-22 110.2 106 50.0
ECA247G3377 Erigeron canadensis HOM05D004717 ORTHO05D005636 2.5e-22 109.8 68 70.6
AagrBONN_evm.TU.Sc2ySwM_117.4144 Anthoceros agrestis HOM05D004717 ORTHO05D005636 3.6e-21 105.9 105 49.5
Ca_23673_v3 Cicer arietinum L. HOM05D004717 ORTHO05D005636 2.3e-20 103.2 120 45.0
Eucgr.D01405 Eucalyptus grandis HOM05D004717 ORTHO05D005636 5.2e-20 102.1 64 67.2
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 5.7e-19 98.6 194 36.1
Os04g0602900 Oryza sativa ssp. japonica HOM05D004717 ORTHO05D005636 4.1e-17 92.4 71 53.5
RhsimUnG0160700 Rhododendron simsii HOM05D004717 ORTHO05D005636 1.8e-12 77.0 58 58.6
Actinidia11311 Actinidia chinensis HOM05D004717 ORTHO05D005636 4.1e-09 65.9 43 65.1
Dinv05788 Davidia involucrata HOM05D004717 ORTHO05D005636 7.3e-06 55.1 35 68.6


User provided reference genes

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