Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g008980.3 Solanum lycopersicum HOM05D006667 ORTHO05D008387 1.4e-147 526.9 421 100.0
Sopen04g004160 Solanum pennellii HOM05D006667 ORTHO05D008387 9.9e-146 520.8 421 99.0
PGSC0003DMG400011513 Solanum tuberosum HOM05D006667 ORTHO05D008387 7.4e-141 504.6 418 93.5
Peaxi162Scf00681g00319 Petunia axillaris HOM05D006667 ORTHO05D008387 1.8e-126 456.8 418 89.7
Nitab4.5_0004979g0060 Nicotiana tabacum HOM05D006667 ORTHO05D008387 1.9e-120 436.8 410 90.5
Nitab4.5_0005997g0030 Nicotiana tabacum HOM05D006667 ORTHO05D008387 1.0e-118 431.0 410 90.2
CAN.G274.16 Capsicum annuum HOM05D006667 ORTHO05D008387 3.0e-118 429.5 409 89.2
Dinv07500 Davidia involucrata HOM05D006667 ORTHO05D008387 1.4e-104 384.0 409 81.9
Actinidia04346 Actinidia chinensis HOM05D006667 ORTHO05D008387 1.9e-104 383.6 408 77.2
Rhsim12G0089400 Rhododendron simsii HOM05D006667 ORTHO05D008387 3.0e-102 376.3 403 76.9
Migut.L00803 Erythranthe guttata HOM05D006667 ORTHO05D008387 3.3e-101 372.9 401 81.5
Prupe.1G349400 Prunus persica HOM05D006667 ORTHO05D008387 3.7e-100 369.4 421 75.1
THA.LOC104819372 Tarenaya hassleriana HOM05D006667 ORTHO05D008387 5.9e-98 362.1 403 82.6
FvH4_4g37160 Fragaria vesca HOM05D006667 ORTHO05D008387 5.0e-97 359.0 408 76.2
FAN12G3199 Fragaria x ananassa HOM05D006667 ORTHO05D008387 1.1e-96 357.8 408 76.0
SalBow2G2931 Salvia bowleyana HOM05D006667 ORTHO05D008387 1.5e-96 357.5 400 78.0
TAR622G0133 Trochodendron aralioides HOM05D006667 ORTHO05D008387 4.2e-96 355.9 403 75.7
AL6G34600 Arabidopsis lyrata HOM05D006667 ORTHO05D008387 9.4e-96 354.8 403 81.4
QL03p045401 Quercus lobata HOM05D006667 ORTHO05D008387 1.2e-95 354.4 402 79.1
Medtr1g114610 Medicago truncatula HOM05D006667 ORTHO05D008387 1.6e-95 354.0 409 76.0
CsaV3_5G029020 Cucumis sativus L. HOM05D006667 ORTHO05D008387 2.7e-95 353.2 423 74.7
RcHm_v2.0_Chr4g0446961 Rosa chinensis HOM05D006667 ORTHO05D008387 2.7e-95 353.2 405 76.3
MELO3C011757.2 Cucumis melo HOM05D006667 ORTHO05D008387 3.6e-95 352.8 422 75.1
Thhalv10004329m.g Eutrema salsugineum HOM05D006667 ORTHO05D008387 1.0e-94 351.3 403 81.4
Hund24389 Selenicereus undatus HOM05D006667 ORTHO05D008387 1.4e-94 350.9 407 78.1
BraA06t26360Z Brassica rapa HOM05D006667 ORTHO05D008387 2.3e-94 350.1 403 80.1
VMungo0720G1985 Vigna mungo HOM05D006667 ORTHO05D008387 3.0e-94 349.7 403 75.7
Lj6A708T61 Lonicera japonica HOM05D006667 ORTHO05D008387 4.0e-94 349.4 403 74.9
Lj6A713T75 Lonicera japonica HOM05D006667 ORTHO05D008387 4.0e-94 349.4 403 74.9
Psat6g234200 Pisum sativum HOM05D006667 ORTHO05D008387 3.3e-93 346.3 405 75.1
CSS0023228 Camellia sinensis var. sinensis HOM05D006667 ORTHO05D008387 7.5e-93 345.1 403 77.4
BcaC03g18029 Brassica carinata HOM05D006667 ORTHO05D008387 1.3e-92 344.4 402 76.1
C02p60910 Brassica napus HOM05D006667 ORTHO05D008387 1.3e-92 344.4 402 76.1
A02p41020 Brassica napus HOM05D006667 ORTHO05D008387 3.7e-92 342.8 402 76.6
Aqoxy3G04313 Aquilegia oxysepala HOM05D006667 ORTHO05D008387 1.4e-91 340.9 402 70.4
EL10Ac9g22983 Beta vulgaris HOM05D006667 ORTHO05D008387 1.8e-91 340.5 404 79.0
Carub.0006s2112 Capsella rubella HOM05D006667 ORTHO05D008387 4.1e-91 339.3 403 79.4
BraA02t09050Z Brassica rapa HOM05D006667 ORTHO05D008387 1.2e-90 337.8 402 76.6
arahy.Tifrunner.gnm1.ann1.IH6UK4 Arachis hypogaea HOM05D006667 ORTHO05D008387 2.7e-90 336.7 421 72.4
Sed0022119 Sechium edule HOM05D006667 ORTHO05D008387 3.5e-90 336.3 421 74.6
ClCG02G014160 Citrullus lanatus HOM05D006667 ORTHO05D008387 1.7e-89 334.0 413 75.8
Sabra05G0073100 Salix brachista HOM05D006667 ORTHO05D008387 3.8e-89 332.8 395 74.2
Sed0011343 Sechium edule HOM05D006667 ORTHO05D008387 8.5e-89 331.6 421 74.3
MBI06_g27487_MAGBIO Magnolia biondii HOM05D006667 ORTHO05D008387 1.1e-88 331.3 395 79.2
Hma1.2p1_0044F.1_g026320 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 1.9e-88 330.5 401 77.8
Aa31LG11G2790 Aethionema arabicum HOM05D006667 ORTHO05D008387 2.5e-88 330.1 403 74.9
CiPaw.05G172300 Carya illinoinensis HOM05D006667 ORTHO05D008387 2.5e-88 330.1 401 76.8
Lj5g0023243 Lotus japonicus HOM05D006667 ORTHO05D008387 2.5e-88 330.1 406 73.6
DCAR_002607 Daucus carota HOM05D006667 ORTHO05D008387 5.5e-88 328.9 410 72.0
CARHR190200 Cardamine hirsuta HOM05D006667 ORTHO05D008387 9.4e-88 328.2 403 74.9
Lalb_Chr02g0143651 Lupinus albus HOM05D006667 ORTHO05D008387 9.4e-88 328.2 418 70.8
unitig_749.g13342 Utricularia gibba HOM05D006667 ORTHO05D008387 1.6e-87 327.4 400 72.2
Gorai.008G147100 Gossypium raimondii HOM05D006667 ORTHO05D008387 3.6e-87 326.2 403 76.7
Manes.04G162700 Manihot esculenta HOM05D006667 ORTHO05D008387 3.6e-87 326.2 401 78.3
C07p44230 Brassica napus HOM05D006667 ORTHO05D008387 6.1e-87 325.5 409 74.1
AT5G23340 Arabidopsis thaliana HOM05D006667 ORTHO05D008387 1.0e-86 324.7 403 78.4
Gohir.D12G135900 Gossypium hirsutum HOM05D006667 ORTHO05D008387 1.0e-86 324.7 403 76.4
BolC7t44948H Brassica oleracea HOM05D006667 ORTHO05D008387 4.0e-86 322.8 409 77.3
A06p34280 Brassica napus HOM05D006667 ORTHO05D008387 5.2e-86 322.4 403 77.7
Glyma.20G102500 Glycine max HOM05D006667 ORTHO05D008387 5.2e-86 322.4 403 77.9
Sc10g0006700 Simmondsia chinensis HOM05D006667 ORTHO05D008387 1.5e-85 320.9 399 72.2
arahy.Tifrunner.gnm1.ann1.F8B6JQ Arachis hypogaea HOM05D006667 ORTHO05D008387 3.4e-85 319.7 407 73.0
Thecc.02G154400 Theobroma cacao HOM05D006667 ORTHO05D008387 3.4e-85 319.7 403 76.7
Potri.005G088800 Populus trichocarpa HOM05D006667 ORTHO05D008387 4.4e-85 319.3 401 71.8
Glyma.10G286600 Glycine max HOM05D006667 ORTHO05D008387 7.5e-85 318.5 404 74.5
MSTRG.8092 Avicennia marina HOM05D006667 ORTHO05D008387 1.8e-83 313.9 401 74.1
TWI74G1436 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 1.8e-83 313.9 402 75.4
CANSAT78G2402 Cannabis sativa HOM05D006667 ORTHO05D008387 3.1e-83 313.2 403 72.5
Sabra07G0063900 Salix brachista HOM05D006667 ORTHO05D008387 9.1e-83 311.6 464 57.5
BcaB07g29860 Brassica carinata HOM05D006667 ORTHO05D008387 5.9e-82 308.9 402 77.1
Cpa.g.sc60.94 Carica papaya HOM05D006667 ORTHO05D008387 5.9e-82 308.9 404 73.0
PGR142G2507 Punica granatum HOM05D006667 ORTHO05D008387 2.3e-81 307.0 400 75.2
TPR.G4129 Trifolium pratense HOM05D006667 ORTHO05D008387 5.5e-80 302.4 403 72.7
AUR62032948 Chenopodium quinoa HOM05D006667 ORTHO05D008387 2.8e-79 300.1 422 68.2
Ciclev10033734m.g Citrus clementina HOM05D006667 ORTHO05D008387 6.8e-78 295.4 402 66.7
Sp2g23820 Schrenkiella parvula HOM05D006667 ORTHO05D008387 8.9e-78 295.0 403 71.0
SGA_v2.0_scaffold80G25957 Striga asiatica HOM05D006667 ORTHO05D008387 7.5e-77 292.0 405 72.1
Hma1.2p1_0044F.1_g026310 Hydrangea macrophylla HOM05D006667 ORTHO05D008387 6.3e-76 288.9 431 56.4
Cfa008778 Carpinus fangiana HOM05D006667 ORTHO05D008387 2.4e-75 287.0 412 65.5
Zm00001eb185570 Zea mays HOM05D006667 ORTHO05D008387 9.2e-75 285.0 398 64.6
Atru.chr11.1242 Acer truncatum HOM05D006667 ORTHO05D008387 1.2e-74 284.6 403 69.5
vmacro15997 Vaccinium macrocarpon HOM05D006667 ORTHO05D008387 5.9e-74 282.3 533 51.0
Ca_11261_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 1.5e-72 277.7 407 69.0
Lsat_1_v5_gn_3_34481 Lactuca sativa HOM05D006667 ORTHO05D008387 6.1e-71 272.3 400 74.2
ECA246G5028 Erigeron canadensis HOM05D002605 ORTHO05D002842 1.2e-69 268.1 398 73.6
CDE04G2906 Ceratophyllum demersum HOM05D006667 ORTHO05D008387 6.4e-68 262.3 407 70.5
Ah.03g147880 Amaranthus hybridus HOM05D006667 ORTHO05D008387 4.1e-67 259.6 423 57.2
COL.COLO4_33111 Corchorus olitorius HOM05D006667 ORTHO05D008387 2.7e-66 256.9 402 70.6
HanXRQChr17g0541041 Helianthus annuus HOM05D006667 ORTHO05D008387 2.7e-66 256.9 402 72.9
Oeu027930.1 Olea europaea HOM05D006667 ORTHO05D008387 3.0e-65 253.4 401 72.3
PSO017G3027 Papaver somniferum HOM05D006667 ORTHO05D008387 8.6e-65 251.9 414 69.1
Eucgr.G02589 Eucalyptus grandis HOM05D006667 ORTHO05D008387 1.1e-64 251.5 403 68.7
TWI53G1716 Tripterygium wilfordii HOM05D006667 ORTHO05D008387 4.4e-61 239.6 402 70.1
Haze_11790 Corylus avellana HOM05D006667 ORTHO05D008387 1.9e-59 234.2 407 62.7
AUR62017733 Chenopodium quinoa HOM05D006667 ORTHO05D008387 1.5e-56 224.6 436 53.9
HanXRQChr06g0171711 Helianthus annuus HOM05D006667 ORTHO05D008387 4.1e-51 206.5 391 68.3
Nn3g18579 Nelumbo nucifera HOM05D006667 ORTHO05D008387 9.2e-51 205.3 403 67.2
Os02g0636400 Oryza sativa ssp. japonica HOM05D006667 ORTHO05D008387 3.0e-49 200.3 176 59.7
Gohir.A12G132300 Gossypium hirsutum HOM05D006667 ORTHO05D008387 9.5e-48 195.3 180 62.2
Phvul.007G014200 Phaseolus vulgaris HOM05D006667 ORTHO05D008387 6.2e-47 192.6 180 62.8
SEGI_01489 Sequoiadendron giganteum HOM05D006667 ORTHO05D008387 5.8e-45 186.0 398 63.8
PSO170G5099 Papaver somniferum HOM05D006667 ORTHO05D008387 7.6e-45 185.7 402 64.7
arahy.Tifrunner.gnm1.ann1.6XP1A8 Arachis hypogaea HOM05D006667 ORTHO05D008387 4.7e-39 166.4 105 73.3
arahy.Tifrunner.gnm1.ann1.RI7T4X Arachis hypogaea HOM05D006667 ORTHO05D008387 4.7e-39 166.4 105 73.3
ATR0618G066 Amborella trichopoda HOM05D006667 ORTHO05D008387 4.9e-36 156.4 397 61.7
Ca_11262_v3 Cicer arietinum L. HOM05D006667 ORTHO05D008387 2.4e-35 154.1 180 46.7
arahy.Tifrunner.gnm1.ann1.ALJ85P Arachis hypogaea HOM05D006667 ORTHO05D008387 4.6e-34 149.8 93 77.4
HPP92_025485 Vanilla planifolia HOM05D006667 ORTHO05D008387 6.0e-34 149.4 108 68.5
Dinv17648 Davidia involucrata HOM05D006667 ORTHO05D008387 5.1e-33 146.4 153 53.6
Potri.007G075600 Populus trichocarpa HOM05D006667 ORTHO05D008387 1.3e-31 141.7 409 41.6
arahy.Tifrunner.gnm1.ann1.L6WSTP Arachis hypogaea HOM05D006667 ORTHO05D008387 1.6e-31 141.4 89 77.5
SMO116G0353 Selaginella moellendorffii HOM05D006667 ORTHO05D008387 7.6e-29 132.5 392 58.7
Medtr7g010500 Medicago truncatula HOM05D006667 ORTHO05D008387 1.8e-17 94.7 70 62.9
BcaC04g21805 Brassica carinata HOM05D006667 ORTHO05D008387 2.9e-12 77.4 81 66.7
C06p28130 Brassica napus HOM05D006667 ORTHO05D008387 1.5e-08 65.1 105 51.4
QL12p041353 Quercus lobata HOM05D002813 ORTHO05D003203 9.7e-08 62.4 169 26.6
C09p27300 Brassica napus HOM05D006667 ORTHO05D008387 1.6e-07 61.6 106 52.8
BolC6t37979H Brassica oleracea HOM05D006667 ORTHO05D008387 1.6e-07 61.6 105 51.4
Nn2g11622 Nelumbo nucifera HOM05D002813 ORTHO05D003203 6.3e-07 59.7 98 36.7
Pp3c10_8230 Physcomitrium patens HOM05D006667 ORTHO05D008387 8.2e-07 59.3 58 55.2
BcaB01g06117 Brassica carinata HOM05D002125 ORTHO05D002105 1.1e-06 58.9 110 29.1
A03p00120 Brassica napus HOM05D002125 ORTHO05D002105 1.1e-06 58.9 110 29.1
BolC3t12601H Brassica oleracea HOM05D002125 ORTHO05D002105 1.1e-06 58.9 110 29.1
BraA03t09402Z Brassica rapa HOM05D002125 ORTHO05D002105 1.1e-06 58.9 110 29.1
MD15G1093400 Malus domestica HOM05D002813 ORTHO05D003203 1.1e-06 58.9 98 33.7
VMungo0647G0746 Vigna mungo HOM05D002125 ORTHO05D002105 1.1e-06 58.9 150 29.3
TAR626G1934 Trochodendron aralioides HOM05D002813 ORTHO05D003203 1.4e-06 58.5 98 35.7
ECA236G1847 Erigeron canadensis HOM05D005998 ORTHO05D007664 2.4e-06 57.8 143 30.1
C03p00270 Brassica napus HOM05D002125 ORTHO05D002105 3.1e-06 57.4 110 29.1
Cfa011788 Carpinus fangiana HOM05D002125 ORTHO05D002105 3.1e-06 57.4 118 28.0
CBR_g11992 Chara braunii HOM05D002125 ORTHO05D008387 3.1e-06 57.4 70 47.1
Haze_04113 Corylus avellana HOM05D002125 ORTHO05D002105 3.1e-06 57.4 101 30.7
unitig_899.g15441 Utricularia gibba HOM05D001818 ORTHO05D001780 3.1e-06 57.4 142 26.1
BolC6t38487H Brassica oleracea HOM05D006667 ORTHO05D008387 4.1e-06 57.0 105 52.4
Atru.chr8.2351 Acer truncatum HOM05D002125 ORTHO05D002105 6.9e-06 56.2 87 32.2
ECA233G4786 Erigeron canadensis HOM05D006532 ORTHO05D008570 6.9e-06 56.2 169 24.3
TPR.G4345 Trifolium pratense HOM05D003819 ORTHO05D005291 6.9e-06 56.2 154 24.7


User provided reference genes

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