Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g008560.3 Solanum lycopersicum HOM05D007103 ORTHO05D008948 1.2e-232 809.7 454 100.0
Sopen04g003720 Solanum pennellii HOM05D007103 ORTHO05D008948 7.5e-232 807.0 454 99.6
PGSC0003DMG400031375 Solanum tuberosum HOM05D007103 ORTHO05D008948 9.8e-232 806.6 454 99.3
Nitab4.5_0000129g0430 Nicotiana tabacum HOM05D007103 ORTHO05D008948 6.0e-205 717.6 455 90.5
Peaxi162Scf00329g00938 Petunia axillaris HOM05D007103 ORTHO05D008948 1.1e-201 706.8 455 90.1
Nitab4.5_0007973g0020 Nicotiana tabacum HOM05D007103 ORTHO05D008948 9.9e-200 700.3 451 87.8
CAN.G458.2 Capsicum annuum HOM05D007103 ORTHO05D008948 1.8e-185 652.9 401 88.8
Lj3A854G74 Lonicera japonica HOM05D007103 ORTHO05D008948 1.0e-159 567.4 475 65.9
MSTRG.2093 Avicennia marina HOM05D007103 ORTHO05D008948 2.0e-152 543.1 457 64.8
Dinv06214 Davidia involucrata HOM05D007103 ORTHO05D008948 7.6e-152 541.2 456 68.0
GSVIVG01010248001 Vitis vinifera HOM05D007103 ORTHO05D008948 5.5e-150 535.0 466 65.0
TWI74G0969 Tripterygium wilfordii HOM05D007103 ORTHO05D008948 4.1e-145 518.8 457 61.9
Cfa015108 Carpinus fangiana HOM05D007103 ORTHO05D008948 5.3e-145 518.5 458 64.8
TAR371G1171 Trochodendron aralioides HOM05D007103 ORTHO05D008948 2.6e-144 516.2 458 64.6
Haze_01571 Corylus avellana HOM05D007103 ORTHO05D008948 4.5e-144 515.4 456 64.5
CSS0049146 Camellia sinensis var. sinensis HOM05D007103 ORTHO05D008948 7.7e-144 514.6 446 67.0
Manes.10G065901 Manihot esculenta HOM05D007103 ORTHO05D008948 2.5e-142 509.6 459 61.0
Rhsim04G0168800 Rhododendron simsii HOM05D007103 ORTHO05D008948 3.2e-142 509.2 519 56.3
HanXRQChr14g0446891 Helianthus annuus HOM05D007103 ORTHO05D008948 6.1e-141 505.0 454 63.4
SGA_v2.0_scaffold127G33990 Striga asiatica HOM05D007103 ORTHO05D008948 3.0e-140 502.7 459 62.1
Thecc.02G296200 Theobroma cacao HOM05D007103 ORTHO05D008948 3.0e-140 502.7 461 61.8
Sed0022925 Sechium edule HOM05D007103 ORTHO05D008948 8.8e-140 501.1 459 62.7
MELO3C005211.2 Cucumis melo HOM05D007103 ORTHO05D008948 2.6e-139 499.6 459 63.4
Nn3g18722 Nelumbo nucifera HOM05D007103 ORTHO05D008948 4.4e-139 498.8 435 68.0
CsaV3_5G017430 Cucumis sativus L. HOM05D007103 ORTHO05D008948 8.2e-138 494.6 459 61.9
Prupe.1G342500 Prunus persica HOM05D007103 ORTHO05D008948 8.2e-138 494.6 469 61.2
Migut.E00576 Erythranthe guttata HOM05D007103 ORTHO05D008948 1.1e-137 494.2 482 57.9
DCAR_030327 Daucus carota HOM05D007103 ORTHO05D008948 1.4e-137 493.8 460 62.8
Eucgr.B02623 Eucalyptus grandis HOM05D007103 ORTHO05D008948 1.2e-136 490.7 457 63.2
QL03p041867 Quercus lobata HOM05D007103 ORTHO05D008948 2.0e-136 490.0 459 65.8
PGR044G1063 Punica granatum HOM05D007103 ORTHO05D008948 2.6e-136 489.6 457 60.6
RcHm_v2.0_Chr4g0446051 Rosa chinensis HOM05D007103 ORTHO05D008948 1.1e-134 484.2 468 61.1
Sabra08G0108900 Salix brachista HOM05D007103 ORTHO05D008948 5.5e-134 481.9 442 57.9
unitig_8.g4025 Utricularia gibba HOM05D007103 ORTHO05D008948 5.5e-134 481.9 456 57.5
Ciclev10005118m.g Citrus clementina HOM05D007103 ORTHO05D008948 2.7e-133 479.6 396 70.2
COL.COLO4_27515 Corchorus olitorius HOM05D007103 ORTHO05D008948 2.7e-133 479.6 450 57.6
Gohir.D01G137900 Gossypium hirsutum HOM05D007103 ORTHO05D008948 2.3e-132 476.5 460 61.1
Gorai.002G168100 Gossypium raimondii HOM05D007103 ORTHO05D008948 3.9e-132 475.7 460 61.3
Glyma.05G135400 Glycine max HOM05D007103 ORTHO05D008948 1.7e-130 470.3 459 58.4
Gohir.A01G145152 Gossypium hirsutum HOM05D007103 ORTHO05D008948 2.2e-130 469.9 461 59.7
CANSAT78G0644 Cannabis sativa HOM05D007103 ORTHO05D008948 1.4e-129 467.2 460 61.5
arahy.Tifrunner.gnm1.ann1.U7H2Z0 Arachis hypogaea HOM05D007103 ORTHO05D008948 1.3e-127 460.7 457 57.1
arahy.Tifrunner.gnm1.ann1.CDY64E Arachis hypogaea HOM05D007103 ORTHO05D008948 3.8e-127 459.1 457 56.9
THA.LOC104805941 Tarenaya hassleriana HOM05D007103 ORTHO05D008948 3.8e-127 459.1 467 59.7
CDE08G0078 Ceratophyllum demersum HOM05D007103 ORTHO05D008948 2.1e-125 453.4 459 55.6
MD13G1010500 Malus domestica HOM05D007103 ORTHO05D008948 2.1e-125 453.4 473 57.1
Lsat_1_v5_gn_3_27560 Lactuca sativa HOM05D007103 ORTHO05D008948 2.7e-125 453.0 454 62.6
HPP92_022082 Vanilla planifolia HOM05D007103 ORTHO05D008948 2.6e-123 446.4 458 56.3
FAN12G1264 Fragaria x ananassa HOM05D007103 ORTHO05D008948 3.3e-123 446.0 475 57.1
Potri.008G143700 Populus trichocarpa HOM05D007103 ORTHO05D008948 3.3e-123 446.0 422 56.6
FAN17G1256 Fragaria x ananassa HOM05D007103 ORTHO05D008948 5.7e-123 445.3 476 56.5
vmacro08589 Vaccinium macrocarpon HOM05D007103 ORTHO05D008948 7.5e-123 444.9 342 69.0
FAN07G2615 Fragaria x ananassa HOM05D007103 ORTHO05D008948 1.3e-122 444.1 475 56.4
Ca_18212_v3 Cicer arietinum L. HOM05D007103 ORTHO05D008948 4.8e-122 442.2 465 54.8
ECA246G2851 Erigeron canadensis HOM05D007103 ORTHO05D008948 1.0e-119 434.5 443 54.9
Sp2g13560 Schrenkiella parvula HOM05D007103 ORTHO05D008948 5.0e-119 432.2 471 57.7
ATR0618G149 Amborella trichopoda HOM05D007103 ORTHO05D008948 2.5e-118 429.9 463 56.6
MBI06_g12320_MAGBIO Magnolia biondii HOM05D007103 ORTHO05D008948 2.5e-118 429.9 328 68.3
PSO478G2004 Papaver somniferum HOM05D007103 ORTHO05D008948 2.5e-118 429.9 461 56.2
Psat7g086680 Pisum sativum HOM05D007103 ORTHO05D008948 1.6e-117 427.2 466 52.1
Carub.0005s0121 Capsella rubella HOM05D007103 ORTHO05D008948 2.1e-117 426.8 462 56.1
AL5G11410 Arabidopsis lyrata HOM05D007103 ORTHO05D008948 8.0e-117 424.9 465 57.2
CiPaw.05G161900 Carya illinoinensis HOM05D007103 ORTHO05D008948 4.0e-116 422.5 329 66.6
Lj4g0001083 Lotus japonicus HOM05D007103 ORTHO05D008948 1.2e-115 421.0 472 52.5
Lalb_Chr13g0293061 Lupinus albus HOM05D007103 ORTHO05D008948 5.7e-115 418.7 467 53.5
ClCG01G007020 Citrullus lanatus HOM05D007103 ORTHO05D008948 1.7e-114 417.2 341 62.8
Glyma.08G090600 Glycine max HOM05D007103 ORTHO05D008948 3.7e-114 416.0 391 59.3
Aa31LG2G7810 Aethionema arabicum HOM05D007103 ORTHO05D008948 1.1e-113 414.5 467 57.8
CARHR144820 Cardamine hirsuta HOM05D007103 ORTHO05D008948 7.0e-113 411.8 473 56.7
Actinidia32355 Actinidia chinensis HOM05D007103 ORTHO05D008948 1.2e-112 411.0 332 66.6
Aqoxy3G00022 Aquilegia oxysepala HOM05D007103 ORTHO05D008948 4.5e-112 409.1 393 61.3
Thhalv10004194m.g Eutrema salsugineum HOM05D007103 ORTHO05D008948 5.5e-110 402.1 472 55.1
AT2G02148 Arabidopsis thaliana HOM05D007103 ORTHO05D008948 7.2e-110 401.7 467 54.8
Sc03g0005470 Simmondsia chinensis HOM05D007103 ORTHO05D008948 1.4e-108 397.5 457 51.9
C09p30690 Brassica napus HOM05D007103 ORTHO05D008948 6.8e-108 395.2 463 54.0
BcaC04g21529 Brassica carinata HOM05D007103 ORTHO05D008948 4.4e-107 392.5 463 54.2
TPR.G34765 Trifolium pratense HOM05D007103 ORTHO05D008948 4.4e-107 392.5 476 50.8
AUR62003469 Chenopodium quinoa HOM05D007103 ORTHO05D008948 5.7e-107 392.1 451 50.6
BraA09t37988Z Brassica rapa HOM05D007103 ORTHO05D008948 1.7e-106 390.6 459 53.2
BcaB07g30707 Brassica carinata HOM05D007103 ORTHO05D008948 3.7e-106 389.4 470 53.6
BolC9t55934H Brassica oleracea HOM05D007103 ORTHO05D008948 2.4e-105 386.7 460 52.8
Phvul.002G186800 Phaseolus vulgaris HOM05D007103 ORTHO05D008948 7.0e-105 385.2 454 50.4
A09p23820 Brassica napus HOM05D007103 ORTHO05D008948 7.8e-104 381.7 461 52.3
Ciclev10010767m.g Citrus clementina HOM05D007103 ORTHO05D008948 3.6e-101 372.9 247 72.5
Zm00001eb228800 Zea mays HOM05D007103 ORTHO05D008948 5.4e-97 359.0 392 50.5
FvH4_4g36300 Fragaria vesca HOM05D007103 ORTHO05D008948 9.2e-97 358.2 353 55.0
AUR62017776 Chenopodium quinoa HOM05D007103 ORTHO05D008948 3.5e-96 356.3 414 49.8
SalBow2G1702 Salvia bowleyana HOM05D007103 ORTHO05D008948 1.7e-95 354.0 277 67.9
FAN22G0934 Fragaria x ananassa HOM05D007103 ORTHO05D008948 3.3e-94 349.7 415 47.7
PSO017G4620 Papaver somniferum HOM05D007103 ORTHO05D008948 3.3e-94 349.7 382 52.6
EL10Ac6g15409 Beta vulgaris HOM05D007103 ORTHO05D008948 5.2e-92 342.4 526 43.7
VMungo0251G2627 Vigna mungo HOM05D007103 ORTHO05D008948 9.2e-89 331.6 393 50.1
SEGI_34932 Sequoiadendron giganteum HOM05D007103 ORTHO05D008948 7.5e-83 312.0 293 53.9
BcaB07g30709 Brassica carinata HOM05D007103 ORTHO05D008948 6.4e-82 308.9 432 46.5
SMO358G0481 Selaginella moellendorffii HOM05D007103 ORTHO05D008948 4.4e-75 286.2 459 39.0
Actinidia25204 Actinidia chinensis HOM05D007103 ORTHO05D008948 9.2e-73 278.5 181 78.5
Atru.chr11.1054 Acer truncatum HOM05D007103 ORTHO05D008948 2.1e-69 267.3 432 45.4
Mapoly0001s0015 Marchantia polymorpha HOM05D007103 ORTHO05D008948 2.8e-69 266.9 487 40.0
Pp3c5_2140 Physcomitrium patens HOM05D007103 ORTHO05D008948 3.5e-64 250.0 488 39.5
Pp3c6_26300 Physcomitrium patens HOM05D007103 ORTHO05D008948 4.3e-62 243.0 493 39.4
Actinidia31381 Actinidia chinensis HOM05D007103 ORTHO05D008948 2.1e-56 224.2 389 48.3
CBR_g70721 Chara braunii HOM05D007103 ORTHO05D008948 8.1e-53 212.2 375 37.6
AagrBONN_evm.TU.Sc2ySwM_368.3256 Anthoceros agrestis HOM05D007103 ORTHO05D008948 1.3e-50 204.9 196 51.5
Cpa.g.sc2.105 Carica papaya HOM05D007103 ORTHO05D008948 7.1e-49 199.1 220 53.6
Medtr5g010860 Medicago truncatula HOM05D007103 ORTHO05D008948 1.3e-45 188.3 197 56.3
Pp3c6_29570 Physcomitrium patens HOM05D007103 ORTHO05D008948 5.1e-31 139.8 185 42.2
Lsat_1_v5_gn_3_133181 Lactuca sativa HOM05D003297 ORTHO05D004027 2.3e-23 114.4 162 48.1
CAN.G166.15 Capsicum annuum HOM05D007103 ORTHO05D008948 2.0e-22 111.3 83 68.7
Hund18263 Selenicereus undatus HOM05D007103 ORTHO05D008948 1.8e-15 88.2 185 38.4
Cpa.g.sc2.103 Carica papaya HOM05D007103 ORTHO05D008948 8.5e-10 69.3 62 54.8
Medtr6g043130 Medicago truncatula HOM05D007103 ORTHO05D008948 1.9e-09 68.2 42 73.8
Aa31LG1G6410 Aethionema arabicum HOM05D007103 ORTHO05D008948 1.2e-08 65.5 111 41.4


User provided reference genes

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