Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 4.8e-191 671.0 340 100.0
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 1.4e-187 659.4 341 98.8
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 2.7e-178 628.6 341 93.8
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 3.3e-168 595.1 341 88.3
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 7.2e-163 577.4 341 86.2
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 4.8e-159 564.7 340 84.4
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 7.0e-134 481.1 298 76.8
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 3.0e-132 475.7 265 86.8
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.0e-132 474.9 349 68.8
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 9.5e-131 470.7 330 70.0
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 8.0e-130 467.6 333 69.7
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.1e-129 467.2 340 68.5
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.4e-129 466.8 334 69.2
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 4.4e-128 461.8 344 66.3
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 9.8e-128 460.7 333 67.9
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 9.8e-128 460.7 333 67.9
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 9.8e-128 460.7 332 69.9
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 2.4e-126 456.1 320 69.1
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 5.4e-126 454.9 296 73.3
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 9.2e-126 454.1 294 73.8
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 2.1e-125 453.0 328 66.5
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 2.1e-125 453.0 328 66.5
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 2.7e-125 452.6 321 67.9
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 3.5e-125 452.2 295 71.9
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 1.7e-124 449.9 340 65.6
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 1.7e-124 449.9 314 69.4
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 2.3e-124 449.5 329 68.1
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 2.3e-124 449.5 295 72.5
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 6.6e-124 448.0 328 67.1
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 1.1e-123 447.2 341 65.1
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 1.5e-123 446.8 340 66.5
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 1.9e-123 446.4 339 64.9
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 3.3e-123 445.7 298 71.5
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 3.3e-123 445.7 301 69.8
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 3.3e-123 445.7 297 70.0
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 5.6e-123 444.9 295 70.2
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 5.6e-123 444.9 338 65.1
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 9.5e-123 444.1 328 65.2
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 2.1e-122 443.0 334 65.9
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 2.8e-122 442.6 298 70.1
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 4.7e-122 441.8 343 66.8
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 6.2e-122 441.4 330 66.4
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 6.2e-122 441.4 295 70.2
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 2.3e-121 439.5 331 64.7
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 5.2e-121 438.3 334 63.5
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 1.2e-120 437.2 340 62.9
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.2e-120 437.2 347 62.2
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 5.8e-120 434.9 344 63.1
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.7e-119 433.3 334 65.0
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 4.9e-119 431.8 321 67.9
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 8.3e-119 431.0 367 61.3
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.1e-118 430.6 293 72.4
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 1.4e-118 430.3 298 67.1
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 1.4e-118 430.3 293 71.3
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 1.4e-118 430.3 339 64.6
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 1.4e-118 430.3 330 65.2
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.9e-118 429.9 343 63.0
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 1.9e-118 429.9 329 63.5
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.4e-118 429.5 297 68.7
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.4e-118 429.5 293 72.0
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 2.4e-118 429.5 297 68.4
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 9.2e-118 427.6 329 65.7
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 1.6e-117 426.8 331 65.3
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 2.1e-117 426.4 330 63.6
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 2.1e-117 426.4 330 63.9
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 2.1e-117 426.4 367 59.9
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 2.7e-117 426.0 331 63.1
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.7e-117 426.0 294 69.4
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 2.7e-117 426.0 342 62.9
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 2.7e-117 426.0 325 64.0
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.7e-117 426.0 353 61.5
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 3.5e-117 425.6 378 56.6
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 4.6e-117 425.2 344 61.9
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 4.6e-117 425.2 335 63.6
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 6.0e-117 424.9 333 64.0
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 7.8e-117 424.5 329 62.9
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 1.3e-116 423.7 331 63.1
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 2.3e-116 422.9 297 68.0
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 3.0e-116 422.5 301 67.1
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 3.9e-116 422.2 314 64.3
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.1e-115 420.6 295 66.8
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.1e-115 420.6 295 66.8
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 3.3e-115 419.1 335 62.4
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 4.3e-115 418.7 297 69.7
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 1.2e-114 417.2 296 69.3
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 2.1e-114 416.4 295 69.5
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 2.1e-114 416.4 296 69.3
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 2.1e-114 416.4 334 62.6
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 3.6e-114 415.6 294 66.0
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.1e-113 414.1 391 55.5
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.9e-113 411.0 294 66.7
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 8.9e-113 411.0 294 66.7
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 1.2e-112 410.6 350 60.9
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 1.5e-112 410.2 295 67.5
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 2.6e-112 409.5 294 67.3
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 7.6e-112 407.9 294 66.0
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 7.6e-112 407.9 288 67.0
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 1.1e-110 404.1 335 60.6
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 4.2e-110 402.1 293 69.3
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 4.6e-109 398.7 294 67.3
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 7.8e-109 397.9 299 63.2
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 5.1e-108 395.2 303 64.0
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 6.6e-108 394.8 320 60.0
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.1e-106 389.8 288 66.0
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 2.1e-106 389.8 298 64.1
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 2.8e-106 389.4 298 64.1
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 6.9e-105 384.8 347 59.7
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.1e-102 377.5 337 56.7
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 1.6e-101 373.6 304 58.9
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.3e-100 370.5 295 59.3
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.9e-99 366.7 330 53.9
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.6e-98 363.6 297 59.9
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 7.1e-94 348.2 252 71.0
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 3.5e-93 345.9 272 62.5
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 5.1e-92 342.0 294 58.8
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 1.9e-91 340.1 289 56.1
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 5.3e-89 332.0 308 52.3
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 8.7e-84 314.7 298 55.4
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 3.3e-83 312.8 312 56.4
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.6e-80 303.1 304 50.3
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 1.1e-75 287.7 371 42.6
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 3.3e-75 286.2 296 46.3
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 6.9e-73 278.5 295 45.4
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 1.9e-70 270.4 299 45.5
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 2.5e-70 270.0 315 49.5
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 2.1e-69 266.9 297 43.1
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 6.1e-69 265.4 199 65.3
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.4e-64 249.6 162 71.0
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.3e-63 247.7 201 62.7
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 1.9e-62 243.8 264 45.1
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 1.8e-52 210.7 172 57.0
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 4.8e-50 202.6 228 47.4
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 4.1e-41 172.9 283 35.0
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 7.2e-38 162.2 114 73.7
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 3.0e-36 156.8 84 84.5
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.7e-34 149.8 118 55.9
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 7.7e-32 142.1 140 53.6
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 4.0e-28 129.8 101 63.4
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 3.4e-27 126.7 73 78.1
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 2.2e-26 124.0 92 59.8
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 6.4e-26 122.5 120 52.5
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.1e-25 121.7 68 77.9
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 7.0e-25 119.0 120 50.8
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 1.3e-23 114.8 70 74.3
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 3.0e-23 113.6 87 58.6
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 7.3e-22 109.0 118 48.3
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 1.0e-20 105.1 88 53.4
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 5.8e-19 99.4 176 36.9
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 3.9e-15 86.7 58 69.0
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 5.0e-15 86.3 63 61.9
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 1.1e-14 85.1 52 71.2
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 9.5e-14 82.0 85 54.1
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 6.4e-10 69.3 47 66.0
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 8.3e-10 68.9 62 51.6
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 1.2e-08 65.1 51 54.9
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.2e-08 65.1 91 36.3


User provided reference genes

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