Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g008340.2 Solanum lycopersicum HOM05D005481 ORTHO05D006779 1.6e-295 1018.8 588 100.0
Sopen04g003490 Solanum pennellii HOM05D005481 ORTHO05D006779 1.3e-231 806.6 498 95.6
Nitab4.5_0000926g0040 Nicotiana tabacum HOM05D005481 ORTHO05D006779 4.4e-192 675.2 597 73.4
CAN.G966.8 Capsicum annuum HOM05D005481 ORTHO05D006779 8.6e-180 634.4 492 82.5
CSS0011982 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.0e-127 461.5 433 68.8
CiPaw.05G158800 Carya illinoinensis HOM05D005481 ORTHO05D006779 1.0e-127 461.5 424 66.3
Actinidia20106 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.1e-126 458.0 459 63.2
MD16G1013100 Malus domestica HOM05D005481 ORTHO05D006779 9.3e-126 454.9 475 66.1
Potri.008G139900 Populus trichocarpa HOM05D005481 ORTHO05D006779 1.0e-124 451.4 434 65.2
Dinv20536 Davidia involucrata HOM05D005481 ORTHO05D006779 1.3e-124 451.1 432 68.1
Eucgr.G02069 Eucalyptus grandis HOM05D005481 ORTHO05D006779 1.3e-124 451.1 478 62.8
COL.COLO4_27578 Corchorus olitorius HOM05D005481 ORTHO05D006779 1.8e-124 450.7 425 66.1
Gohir.A12G153800 Gossypium hirsutum HOM05D005481 ORTHO05D006779 1.8e-124 450.7 425 65.6
Cc11_g05700 Coffea canephora HOM05D005481 ORTHO05D006779 3.0e-124 449.9 441 65.3
MSTRG.13650 Avicennia marina HOM05D005481 ORTHO05D006779 2.5e-123 446.8 431 65.2
MD13G1015600 Malus domestica HOM05D005481 ORTHO05D006779 3.3e-123 446.4 481 65.9
Cfa022222 Carpinus fangiana HOM05D005481 ORTHO05D006779 7.4e-123 445.3 426 66.0
Hma1.2p1_0095F.1_g047500 Hydrangea macrophylla HOM05D005481 ORTHO05D006779 7.4e-123 445.3 429 67.8
Actinidia37496 Actinidia chinensis HOM05D005481 ORTHO05D006779 1.3e-122 444.5 458 62.4
GSVIVG01011593001 Vitis vinifera HOM05D005481 ORTHO05D006779 2.8e-122 443.4 425 70.8
CsaV3_5G012960 Cucumis sativus L. HOM05D005481 ORTHO05D006779 1.1e-121 441.4 454 65.6
FAN07G1071 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.4e-121 441.0 433 65.4
RcHm_v2.0_Chr4g0433701 Rosa chinensis HOM05D005481 ORTHO05D006779 1.4e-121 441.0 431 64.7
ClCG11G000990 Citrullus lanatus HOM05D005481 ORTHO05D006779 1.8e-121 440.7 468 64.7
CANSAT78G1557 Cannabis sativa HOM05D005481 ORTHO05D006779 2.4e-121 440.3 462 67.1
Gohir.D12G156900 Gossypium hirsutum HOM05D005481 ORTHO05D006779 4.1e-121 439.5 423 63.1
Gorai.008G169700 Gossypium raimondii HOM05D005481 ORTHO05D006779 4.1e-121 439.5 439 63.6
MELO3C020059.2 Cucumis melo HOM05D005481 ORTHO05D006779 5.3e-121 439.1 454 65.2
SalBow2G3020 Salvia bowleyana HOM05D005481 ORTHO05D006779 6.9e-121 438.7 458 65.1
Sed0010601 Sechium edule HOM05D005481 ORTHO05D006779 1.2e-120 438.0 455 62.4
CSS0010274 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.5e-120 437.6 456 64.0
Lj4g0017847 Lotus japonicus HOM05D005481 ORTHO05D006779 2.6e-120 436.8 421 67.2
TPR.G11925 Trifolium pratense HOM05D005481 ORTHO05D006779 7.7e-120 435.3 434 65.2
TWI77G0967 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 7.7e-120 435.3 425 65.6
Glyma.05G137400 Glycine max HOM05D005481 ORTHO05D006779 1.7e-119 434.1 425 65.4
FAN17G1043 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.4e-118 431.0 433 65.8
PSO063G6983 Papaver somniferum HOM05D005481 ORTHO05D006779 1.4e-118 431.0 425 64.7
SGA_v2.0_scaffold65G22147 Striga asiatica HOM05D005481 ORTHO05D006779 3.2e-118 429.9 465 64.1
Migut.E00569 Erythranthe guttata HOM05D005481 ORTHO05D006779 1.2e-117 427.9 464 65.5
FvH4_4g26130 Fragaria vesca HOM05D005481 ORTHO05D006779 1.6e-117 427.6 433 64.7
Rhsim09G0085400 Rhododendron simsii HOM05D005481 ORTHO05D006779 1.6e-117 427.6 494 56.9
Ca_18192_v3 Cicer arietinum L. HOM05D005481 ORTHO05D006779 2.1e-117 427.2 427 65.6
Nitab4.5_0007504g0030 Nicotiana tabacum HOM05D005481 ORTHO05D006779 3.6e-117 426.4 292 84.6
Atru.chr11.1002 Acer truncatum HOM05D005481 ORTHO05D006779 2.3e-116 423.7 433 65.6
PSO782G1235 Papaver somniferum HOM05D005481 ORTHO05D006779 3.0e-116 423.3 421 65.3
TAR622G0189 Trochodendron aralioides HOM05D005481 ORTHO05D006779 8.8e-116 421.8 380 71.8
Peaxi162Scf00337g00010 Petunia axillaris HOM05D005481 ORTHO05D006779 2.0e-115 420.6 284 85.6
EL10Ac8g18625 Beta vulgaris HOM05D005481 ORTHO05D006779 4.3e-115 419.5 413 65.6
Carub.0002s1458 Capsella rubella HOM05D005481 ORTHO05D006779 9.7e-115 418.3 427 66.0
Sp5g23100 Schrenkiella parvula HOM05D005481 ORTHO05D006779 2.8e-114 416.8 427 65.6
Glyma.08G092700 Glycine max HOM05D005481 ORTHO05D006779 3.7e-114 416.4 425 63.3
TWI74G0731 Tripterygium wilfordii HOM05D005481 ORTHO05D006779 3.7e-114 416.4 432 60.9
FAN22G2365 Fragaria x ananassa HOM05D005481 ORTHO05D006779 4.8e-114 416.0 459 61.9
Aqoxy3G04008 Aquilegia oxysepala HOM05D005481 ORTHO05D006779 6.3e-114 415.6 459 62.5
Manes.15G138800 Manihot esculenta HOM05D005481 ORTHO05D006779 1.4e-113 414.5 430 65.3
Prupe.1G338200 Prunus persica HOM05D005481 ORTHO05D006779 3.1e-113 413.3 424 64.4
ECA234G1527 Erigeron canadensis HOM05D005481 ORTHO05D006779 9.1e-113 411.8 410 67.8
ATR0598G125 Amborella trichopoda HOM05D005481 ORTHO05D006779 1.0e-111 408.3 430 64.0
AT1G68100 Arabidopsis thaliana HOM05D005481 ORTHO05D006779 1.1e-110 404.8 427 63.7
BcaC08g45998 Brassica carinata HOM05D005481 ORTHO05D006779 1.1e-110 404.8 436 64.0
Phvul.002G184200 Phaseolus vulgaris HOM05D005481 ORTHO05D006779 1.1e-110 404.8 422 63.0
Lalb_Chr07g0187931 Lupinus albus HOM05D005481 ORTHO05D006779 1.4e-110 404.4 430 63.7
arahy.Tifrunner.gnm1.ann1.31BYXQ Arachis hypogaea HOM05D005481 ORTHO05D006779 3.2e-110 403.3 387 65.4
A07p34580 Brassica napus HOM05D005481 ORTHO05D006779 5.5e-110 402.5 432 62.5
C06p37930 Brassica napus HOM05D005481 ORTHO05D006779 1.2e-109 401.4 434 64.1
AL2G26810 Arabidopsis lyrata HOM05D005481 ORTHO05D006779 1.6e-109 401.0 427 63.0
Os08g0467400 Oryza sativa ssp. japonica HOM05D005481 ORTHO05D006779 7.9e-109 398.7 440 60.7
HanXRQChr17g0566271 Helianthus annuus HOM05D005481 ORTHO05D006779 1.0e-108 398.3 433 61.9
THA.LOC104821909 Tarenaya hassleriana HOM05D005481 ORTHO05D006779 1.4e-108 397.9 436 61.9
Thhalv10018501m.g Eutrema salsugineum HOM05D005481 ORTHO05D006779 1.8e-108 397.5 427 63.9
BcaB03g15132 Brassica carinata HOM05D005481 ORTHO05D006779 2.3e-108 397.1 427 62.3
C06p41930 Brassica napus HOM05D005481 ORTHO05D006779 6.7e-108 395.6 432 63.0
A07p32160 Brassica napus HOM05D005481 ORTHO05D006779 1.5e-107 394.4 481 59.3
BraA07t30846Z Brassica rapa HOM05D005481 ORTHO05D006779 1.5e-107 394.4 481 59.3
FAN12G2411 Fragaria x ananassa HOM05D005481 ORTHO05D006779 1.7e-106 391.0 433 61.7
BcaC08g46237 Brassica carinata HOM05D005481 ORTHO05D006779 2.8e-106 390.2 428 62.9
BolC6t38892H Brassica oleracea HOM05D005481 ORTHO05D006779 3.1e-105 386.7 436 62.4
CDE05G3246 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 9.1e-105 385.2 428 61.2
BraA07t31076Z Brassica rapa HOM05D005481 ORTHO05D006779 2.6e-104 383.6 432 60.9
QL03p039175 Quercus lobata HOM05D005481 ORTHO05D006779 5.9e-104 382.5 610 47.2
CDE05G2094 Ceratophyllum demersum HOM05D005481 ORTHO05D006779 3.8e-103 379.8 422 61.1
Duzib251G0084 Durio zibethinus HOM05D005481 ORTHO05D006779 2.5e-102 377.1 427 60.2
unitig_22.g5612 Utricularia gibba HOM05D005481 ORTHO05D006779 2.5e-102 377.1 462 57.1
Aa31LG9G8490 Aethionema arabicum HOM05D005481 ORTHO05D006779 3.6e-101 373.2 505 54.7
BolC6t39238H Brassica oleracea HOM05D005481 ORTHO05D006779 6.1e-101 372.5 428 61.2
MBI19_g01916_MAGBIO Magnolia biondii HOM05D005481 ORTHO05D006779 1.5e-99 367.9 439 59.7
Sabra08G0106000 Salix brachista HOM05D005481 ORTHO05D006779 7.4e-99 365.5 453 57.4
Lsat_1_v5_gn_4_24241 Lactuca sativa HOM05D005481 ORTHO05D006779 1.3e-90 338.2 488 57.6
CARHR060770 Cardamine hirsuta HOM05D005481 ORTHO05D006779 1.1e-89 335.1 378 60.3
AUR62033487 Chenopodium quinoa HOM05D005481 ORTHO05D006779 4.1e-89 333.2 376 57.2
Hund03668 Selenicereus undatus HOM05D005481 ORTHO05D006779 8.5e-87 325.5 381 58.0
Pp3c12_24640 Physcomitrium patens HOM05D005481 ORTHO05D006779 1.6e-85 321.2 434 51.6
Mapoly0096s0003 Marchantia polymorpha HOM05D005481 ORTHO05D006779 4.7e-85 319.7 434 52.3
Mapoly0096s0004 Marchantia polymorpha HOM05D005481 ORTHO05D006779 4.7e-85 319.7 434 52.3
Sc10g0004950 Simmondsia chinensis HOM05D005481 ORTHO05D006779 1.0e-84 318.5 408 53.9
Duzib268G0472 Durio zibethinus HOM05D005481 ORTHO05D006779 4.0e-84 316.6 423 54.1
FAN12G2899 Fragaria x ananassa HOM05D005481 ORTHO05D006779 2.4e-81 307.4 292 64.7
SMO164G0085 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 1.7e-79 301.2 473 47.4
VMungo0251G3144 Vigna mungo HOM05D005481 ORTHO05D000001 8.6e-79 298.9 290 63.1
Ciclev10018249m.g Citrus clementina HOM05D005481 ORTHO05D006779 3.3e-78 297.0 293 64.2
DCAR_002653 Daucus carota HOM05D005481 ORTHO05D006779 3.0e-76 290.4 296 63.5
Psat7g085400 Pisum sativum HOM05D005481 ORTHO05D006779 7.5e-75 285.8 333 61.9
HPP92_005759 Vanilla planifolia HOM05D005481 ORTHO05D006779 1.7e-74 284.6 428 50.7
BcaC08g45996 Brassica carinata HOM05D005481 ORTHO05D006779 1.7e-71 274.6 429 52.4
Thecc.02G303600 Theobroma cacao HOM05D005481 ORTHO05D006779 8.0e-69 265.8 285 62.1
Haze_10808 Corylus avellana HOM05D005481 ORTHO05D006779 1.3e-66 258.5 639 40.2
Zm00001eb037820 Zea mays HOM05D005481 ORTHO05D006779 9.2e-65 252.3 324 58.0
SMO271G0121 Selaginella moellendorffii HOM05D005481 ORTHO05D006779 1.7e-63 248.1 349 47.9
BcaB03g15400 Brassica carinata HOM05D005481 ORTHO05D006779 6.6e-63 246.1 178 76.4
AUR62011097 Chenopodium quinoa HOM05D005481 ORTHO05D006779 1.5e-59 235.0 381 47.2
AagrBONN_evm.TU.Sc2ySwM_368.3383 Anthoceros agrestis HOM05D005481 ORTHO05D006779 1.7e-58 231.5 330 51.2
BcaB03g15128 Brassica carinata HOM05D005481 ORTHO05D006779 5.4e-57 226.5 346 53.8
Dinv20505 Davidia involucrata HOM05D005481 ORTHO05D006779 3.1e-52 210.7 205 72.2
BcaB03g15126 Brassica carinata HOM05D005481 ORTHO05D006779 4.0e-52 210.3 367 50.1
CBR_g56846 Chara braunii HOM05D005481 ORTHO05D006779 1.0e-47 195.7 452 41.2
Oeu062661.1 Olea europaea HOM05D005481 ORTHO05D006779 3.4e-35 154.1 103 82.5
SEGI_33830 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 2.1e-32 144.8 218 50.9
VMungo0251G2403 Vigna mungo HOM05D005481 ORTHO05D006779 4.6e-32 143.7 107 72.0
MCO07G486 Micromonas commoda HOM05D005481 ORTHO05D006779 1.0e-31 142.5 368 31.2
Cpa.g.sc326.1 Carica papaya HOM05D005481 ORTHO05D006779 1.3e-29 135.6 87 83.9
CSS0044880 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 1.1e-28 132.5 119 66.4
BcaB03g15129 Brassica carinata HOM05D005481 ORTHO05D006779 2.0e-27 128.3 244 50.0
TAR374G1742 Trochodendron aralioides HOM05D005481 ORTHO05D006779 2.0e-27 128.3 172 63.4
Oeu062663.1 Olea europaea HOM05D005481 ORTHO05D006779 2.7e-24 117.9 131 67.9
Cpa.g.sc326.2 Carica papaya HOM05D005481 ORTHO05D006779 5.6e-22 110.2 89 66.3
BcaB03g15399 Brassica carinata HOM05D005481 ORTHO05D006779 1.1e-20 105.9 93 75.3
TAR374G0503 Trochodendron aralioides HOM05D005481 ORTHO05D006779 1.4e-20 105.5 56 87.5
FAN12G0241 Fragaria x ananassa HOM05D005481 ORTHO05D006779 4.2e-17 94.0 96 59.4
Sc10g0005080 Simmondsia chinensis HOM05D005481 ORTHO05D006779 3.0e-15 87.8 77 61.0
Ah.09g225960 Amaranthus hybridus HOM05D005481 ORTHO05D006779 5.1e-15 87.0 181 44.2
CSS0008657 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 2.5e-14 84.7 64 68.8
CSS0020286 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 9.6e-14 82.8 96 55.2
CSS0022702 Camellia sinensis var. sinensis HOM05D005481 ORTHO05D006779 3.2e-09 67.8 88 46.6
HanXRQChr16g0527591 Helianthus annuus HOM05D005481 ORTHO05D006779 1.0e-07 62.8 43 72.1
SEGI_02848 Sequoiadendron giganteum HOM05D005481 ORTHO05D006779 1.5e-06 58.9 39 76.9
MCO14G334 Micromonas commoda HOM05D005481 ORTHO05D006779 4.3e-06 57.4 223 27.4


User provided reference genes

Program Settings