Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 3.4e-186 654.8 324 100.0
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 2.1e-183 645.6 324 98.5
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 2.4e-168 595.5 324 91.4
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 5.3e-163 577.8 325 88.6
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 2.1e-159 565.8 299 94.3
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 5.3e-155 551.2 335 82.1
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 3.2e-120 435.6 325 64.6
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 4.8e-116 421.8 326 64.4
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 3.1e-115 419.1 323 65.0
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 2.2e-113 412.9 326 64.4
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 5.0e-113 411.8 325 63.4
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 6.5e-113 411.4 323 63.2
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.2e-110 401.7 325 62.5
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 5.2e-110 401.7 325 62.5
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 6.8e-110 401.4 325 62.5
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 6.8e-110 401.4 325 63.7
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 2.6e-109 399.4 325 62.2
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 3.4e-109 399.1 329 62.6
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 1.3e-108 397.1 324 61.7
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.3e-108 397.1 325 60.0
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 8.3e-108 394.4 328 62.8
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 1.4e-107 393.7 339 60.8
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 1.8e-107 393.3 325 60.9
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 7.0e-107 391.3 325 60.3
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 9.1e-107 391.0 327 58.7
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 9.1e-107 391.0 323 61.6
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.6e-106 390.2 325 61.2
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 5.9e-106 388.3 326 60.7
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 5.9e-106 388.3 325 59.7
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 2.2e-105 386.3 326 60.4
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 2.9e-105 386.0 329 59.0
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 8.5e-105 384.4 325 60.0
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 2.5e-104 382.9 334 58.4
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 2.5e-104 382.9 288 65.6
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 4.7e-103 378.6 325 59.7
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 6.1e-103 378.3 328 58.5
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 8.0e-103 377.9 326 60.4
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 1.0e-102 377.5 331 58.9
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 1.4e-102 377.1 315 63.8
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 3.0e-102 375.9 326 59.5
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 5.2e-102 375.2 326 59.5
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 4.4e-101 372.1 327 59.0
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 4.4e-101 372.1 327 58.4
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.7e-100 370.2 326 59.8
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 2.2e-100 369.8 325 57.2
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 2.8e-100 369.4 328 58.8
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 3.7e-100 369.0 330 57.9
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 8.3e-100 367.9 326 58.0
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 1.1e-99 367.5 325 57.5
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 7.0e-99 364.8 303 60.4
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 9.1e-99 364.4 325 57.2
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 2.0e-98 363.2 323 57.0
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 2.7e-98 362.8 332 57.2
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 7.7e-98 361.3 280 64.3
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.3e-97 360.5 325 56.3
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.8e-97 359.0 329 56.8
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 6.6e-97 358.2 326 56.4
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.1e-96 357.5 325 56.6
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.9e-96 356.7 323 58.8
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 3.3e-96 355.9 328 56.1
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 2.8e-95 352.8 328 55.5
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 8.0e-95 351.3 326 54.3
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 3.0e-94 349.4 294 61.2
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 2.6e-93 346.3 326 54.0
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 2.6e-93 346.3 333 54.1
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 4.4e-93 345.5 333 54.1
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 5.7e-93 345.1 326 54.3
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 5.7e-93 345.1 354 51.7
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 2.2e-92 343.2 273 58.6
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 1.1e-91 340.9 338 53.6
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 2.4e-91 339.7 288 61.5
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 4.1e-91 339.0 325 52.6
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 7.0e-91 338.2 322 54.0
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 7.0e-91 338.2 331 55.0
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 9.2e-91 337.8 330 54.2
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 2.0e-90 336.7 330 55.2
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 2.0e-90 336.7 326 53.7
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 2.0e-90 336.7 328 53.0
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 3.5e-90 335.9 331 55.0
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 7.8e-90 334.7 294 60.2
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 1.5e-88 330.5 289 58.8
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 7.3e-88 328.2 333 53.8
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 2.3e-86 323.2 213 72.8
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 2.6e-85 319.7 329 52.9
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 9.8e-85 317.8 249 64.3
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 9.8e-85 317.8 288 56.6
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 3.5e-82 309.3 297 54.5
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.6e-82 308.9 289 56.4
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.7e-81 307.0 323 51.1
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.5e-80 303.9 294 53.4
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 2.8e-79 299.7 320 49.1
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 6.2e-79 298.5 317 51.1
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 3.4e-77 292.7 324 50.0
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 7.5e-77 291.6 342 48.2
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.7e-76 290.4 342 47.4
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 1.1e-75 287.7 342 46.8
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 4.1e-75 285.8 347 45.2
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 2.1e-74 283.5 229 61.1
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 6.0e-74 282.0 357 46.8
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 5.6e-72 275.4 248 55.6
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 1.6e-71 273.9 314 49.4
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 8.1e-71 271.6 259 55.6
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.1e-70 271.2 356 43.5
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.4e-67 260.8 357 43.7
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 3.2e-67 259.6 323 46.1
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.0e-65 254.6 277 49.8
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 9.6e-64 248.1 277 50.9
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 1.6e-63 247.3 172 69.8
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 3.6e-63 246.1 295 44.1
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 4.7e-63 245.7 242 49.2
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 1.5e-61 240.7 212 61.3
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.0e-61 240.4 231 56.7
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.0e-61 240.4 231 56.7
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.4e-61 239.6 214 55.1
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 2.9e-60 236.5 325 40.9
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 3.8e-60 236.1 290 41.7
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.4e-59 232.3 291 45.7
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 1.2e-58 231.1 323 43.3
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 7.8e-58 228.4 209 56.5
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.2e-51 206.1 243 45.7
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 2.1e-50 203.8 214 51.9
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 2.7e-50 203.4 218 46.3
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 4.8e-47 192.6 248 46.4
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 1.1e-46 191.4 121 70.2
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 7.6e-45 185.3 175 52.6
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 1.7e-44 184.1 179 54.2
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.9e-43 180.6 158 57.0
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 2.3e-41 173.7 150 58.0
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 9.6e-40 168.3 130 63.8
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.3e-39 167.9 159 55.3
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.8e-38 164.1 276 37.7
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 4.0e-38 162.9 248 37.1
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 7.9e-34 148.7 148 52.0
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 1.1e-32 144.8 158 47.5
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 4.3e-32 142.9 154 51.9
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 1.3e-31 141.4 282 30.9
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 2.2e-28 130.6 79 75.9
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 6.5e-28 129.0 200 40.5
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.1e-27 128.3 175 45.7
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 5.7e-24 115.9 70 71.4
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.8e-17 94.4 183 29.5
Aqoxy6G02632 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.4e-14 84.7 60 68.3
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 5.7e-08 62.8 90 41.1
Peaxi162Scf00376g00009 Petunia axillaris HOM05D005212 ORTHO05D006353 9.7e-08 62.0 31 83.9
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 2.8e-07 60.5 50 46.0
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 3.7e-07 60.1 189 27.5


User provided reference genes

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