Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g007730.3 Solanum lycopersicum HOM05D004292 ORTHO05D005206 6.1e-143 510.8 250 100.0
Sopen04g002820 Solanum pennellii HOM05D004292 ORTHO05D005206 1.3e-140 503.1 250 98.0
PGSC0003DMG401005954 Solanum tuberosum HOM05D004292 ORTHO05D005206 2.8e-140 501.9 250 98.0
CAN.G150.4 Capsicum annuum HOM05D004292 ORTHO05D005206 9.8e-133 476.9 250 92.8
Nitab4.5_0004230g0010 Nicotiana tabacum HOM05D004292 ORTHO05D005206 9.4e-128 460.3 250 90.0
Peaxi162Scf00253g01121 Petunia axillaris HOM05D004292 ORTHO05D005206 6.1e-127 457.6 250 88.4
Actinidia36661 Actinidia chinensis HOM05D004292 ORTHO05D005206 2.5e-112 409.1 250 78.0
Dinv07664 Davidia involucrata HOM05D004292 ORTHO05D005206 2.5e-112 409.1 250 79.2
Peaxi162Scf00159g01025 Petunia axillaris HOM05D004292 ORTHO05D005206 7.3e-112 407.5 250 79.6
Hma1.2p1_0096F.1_g047700 Hydrangea macrophylla HOM05D004292 ORTHO05D005206 8.0e-111 404.1 248 77.4
Nitab4.5_0000426g0230 Nicotiana tabacum HOM05D004292 ORTHO05D005206 1.0e-110 403.7 250 80.0
Actinidia12367 Actinidia chinensis HOM05D004292 ORTHO05D005206 1.4e-110 403.3 250 77.2
CSS0026867 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 1.4e-110 403.3 248 78.2
Manes.15G129300 Manihot esculenta HOM05D004292 ORTHO05D005206 5.8e-109 397.9 250 76.0
MSTRG.2160 Avicennia marina HOM05D004292 ORTHO05D005206 6.4e-108 394.4 249 73.5
Potri.010G111300 Populus trichocarpa HOM05D004292 ORTHO05D005206 1.9e-107 392.9 250 76.0
GSVIVG01011737001 Vitis vinifera HOM05D004292 ORTHO05D005206 1.9e-107 392.9 250 76.4
Eucgr.G02180 Eucalyptus grandis HOM05D004292 ORTHO05D005206 5.4e-107 391.3 250 74.4
CSS0022047 Camellia sinensis var. sinensis HOM05D004292 ORTHO05D005206 9.2e-107 390.6 251 74.5
Manes.17G078500 Manihot esculenta HOM05D004292 ORTHO05D005206 9.2e-107 390.6 248 75.0
TWI75G1503 Tripterygium wilfordii HOM05D004292 ORTHO05D005206 1.2e-106 390.2 250 75.6
Lj3C871G6 Lonicera japonica HOM05D004292 ORTHO05D005206 2.7e-106 389.0 248 73.8
Thecc.02G283600 Theobroma cacao HOM05D004292 ORTHO05D005206 2.7e-106 389.0 250 76.0
Duzib248G1431 Durio zibethinus HOM05D004292 ORTHO05D005206 1.3e-105 386.7 250 74.4
SGA_v2.0_scaffold234G43615 Striga asiatica HOM05D004292 ORTHO05D005206 1.7e-105 386.3 248 74.2
Duzib251G0662 Durio zibethinus HOM05D004292 ORTHO05D005206 1.5e-104 383.3 251 74.9
Nn3g18267 Nelumbo nucifera HOM05D004292 ORTHO05D005206 1.5e-104 383.3 251 72.9
Atru.chr11.473 Acer truncatum HOM05D004292 ORTHO05D005206 1.9e-104 382.9 250 73.2
CiPaw.06G047000 Carya illinoinensis HOM05D004292 ORTHO05D005206 2.5e-104 382.5 250 72.8
Sabra10G0081700 Salix brachista HOM05D004292 ORTHO05D005206 3.3e-104 382.1 250 74.0
Medtr1g031620 Medicago truncatula HOM05D004292 ORTHO05D005206 5.6e-104 381.3 252 72.2
CANSAT64G1906 Cannabis sativa HOM05D004292 ORTHO05D005206 9.5e-104 380.6 250 73.6
Nn4g24213 Nelumbo nucifera HOM05D004292 ORTHO05D005206 2.8e-103 379.0 250 72.4
Psat6g043600 Pisum sativum HOM05D004292 ORTHO05D005206 1.1e-102 377.1 245 73.9
Prupe.1G326900 Prunus persica HOM05D004292 ORTHO05D005206 1.1e-102 377.1 250 73.2
Ciclev10016392m.g Citrus clementina HOM05D004292 ORTHO05D005206 1.4e-102 376.7 250 72.8
Rhsim09G0096100 Rhododendron simsii HOM05D004292 ORTHO05D005206 1.4e-102 376.7 252 72.2
COL.COLO4_13153 Corchorus olitorius HOM05D004292 ORTHO05D005206 1.8e-102 376.3 250 74.4
Thhalv10019522m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 2.3e-102 375.9 250 73.2
PGR119G0156 Punica granatum HOM05D004292 ORTHO05D005206 2.3e-102 375.9 251 74.1
THA.LOC104809176 Tarenaya hassleriana HOM05D004292 ORTHO05D005206 6.8e-102 374.4 250 73.6
Sp5g26070 Schrenkiella parvula HOM05D004292 ORTHO05D005206 1.2e-101 373.6 250 72.8
Carub.0002s1769 Capsella rubella HOM05D004292 ORTHO05D005206 2.0e-101 372.9 250 72.0
Gorai.002G178500 Gossypium raimondii HOM05D004292 ORTHO05D005206 2.0e-101 372.9 250 73.2
RcHm_v2.0_Chr4g0441581 Rosa chinensis HOM05D004292 ORTHO05D005206 2.0e-101 372.9 250 74.4
Potri.008G130700 Populus trichocarpa HOM05D004292 ORTHO05D005206 2.6e-101 372.5 250 72.0
TPR.G36967 Trifolium pratense HOM05D004292 ORTHO05D005206 2.6e-101 372.5 252 70.2
Gohir.D01G144600 Gossypium hirsutum HOM05D004292 ORTHO05D005206 3.4e-101 372.1 250 73.2
Lj2g0018897 Lotus japonicus HOM05D004292 ORTHO05D005206 4.4e-101 371.7 252 69.8
AL2G30410 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 5.8e-101 371.3 250 72.0
AT1G70900 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 9.8e-101 370.5 250 71.6
TAR374G0923 Trochodendron aralioides HOM05D004292 ORTHO05D005206 1.3e-100 370.2 250 72.0
BraA07t31292Z Brassica rapa HOM05D004292 ORTHO05D005206 2.2e-100 369.4 250 71.6
Aa31LG7G7080 Aethionema arabicum HOM05D004292 ORTHO05D005206 2.9e-100 369.0 261 70.1
A07p37330 Brassica napus HOM05D004292 ORTHO05D005206 2.9e-100 369.0 250 71.6
Sp1g20550 Schrenkiella parvula HOM05D004292 ORTHO05D005206 3.7e-100 368.6 250 70.8
Lalb_Chr17g0338501 Lupinus albus HOM05D004292 ORTHO05D005206 4.9e-100 368.2 241 72.6
CARHR023490 Cardamine hirsuta HOM05D004292 ORTHO05D005206 8.3e-100 367.5 250 70.0
Cfa008626 Carpinus fangiana HOM05D004292 ORTHO05D005206 1.1e-99 367.1 249 71.1
BcaB03g14853 Brassica carinata HOM05D004292 ORTHO05D005206 1.9e-99 366.3 250 72.0
Gohir.A05G309400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.9e-99 366.3 239 72.8
Gohir.D05G310300 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.9e-99 366.3 239 72.8
QL01p001285 Quercus lobata HOM05D004292 ORTHO05D005206 1.9e-99 366.3 249 70.7
Aqoxy3G00082 Aquilegia oxysepala HOM05D004292 ORTHO05D005206 2.4e-99 365.9 250 70.8
C06p45000 Brassica napus HOM05D004292 ORTHO05D005206 2.4e-99 365.9 250 71.2
BolC6t39558H Brassica oleracea HOM05D004292 ORTHO05D005206 2.4e-99 365.9 250 71.2
BcaC08g46539 Brassica carinata HOM05D004292 ORTHO05D005206 5.4e-99 364.8 250 70.8
Carub.0001s2263 Capsella rubella HOM05D004292 ORTHO05D005206 5.4e-99 364.8 250 71.2
Thhalv10008584m.g Eutrema salsugineum HOM05D004292 ORTHO05D005206 5.4e-99 364.8 250 70.4
CARHR064180 Cardamine hirsuta HOM05D004292 ORTHO05D005206 7.1e-99 364.4 250 70.0
Haze_10980 Corylus avellana HOM05D004292 ORTHO05D005206 9.2e-99 364.0 251 70.5
Migut.L00354 Erythranthe guttata HOM05D004292 ORTHO05D005206 9.2e-99 364.0 252 69.4
Glyma.19G064200 Glycine max HOM05D004292 ORTHO05D005206 9.2e-99 364.0 252 67.9
Gorai.009G330900 Gossypium raimondii HOM05D004292 ORTHO05D005206 9.2e-99 364.0 239 72.4
MD16G1026500 Malus domestica HOM05D004292 ORTHO05D005206 9.2e-99 364.0 251 70.1
ATR0564G234 Amborella trichopoda HOM05D004292 ORTHO05D005206 1.2e-98 363.6 251 70.9
HanXRQChr08g0212101 Helianthus annuus HOM05D004292 ORTHO05D005206 1.2e-98 363.6 253 68.8
Phvul.003G031700 Phaseolus vulgaris HOM05D004292 ORTHO05D005206 1.2e-98 363.6 252 68.3
Sc04g0005360 Simmondsia chinensis HOM05D004292 ORTHO05D005206 1.2e-98 363.6 252 69.4
arahy.Tifrunner.gnm1.ann1.EY5UDZ Arachis hypogaea HOM05D004292 ORTHO05D005206 2.1e-98 362.8 252 68.3
FvH4_4g32670 Fragaria vesca HOM05D004292 ORTHO05D005206 2.1e-98 362.8 250 72.0
FAN12G2104 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.1e-98 362.8 250 72.0
FAN17G0423 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.1e-98 362.8 250 71.6
FAN07G2049 Fragaria x ananassa HOM05D004292 ORTHO05D005206 2.7e-98 362.5 250 71.6
MD13G1023800 Malus domestica HOM05D004292 ORTHO05D005206 2.7e-98 362.5 251 70.5
AT1G23110 Arabidopsis thaliana HOM05D004292 ORTHO05D005206 3.5e-98 362.1 250 70.4
Migut.E00438 Erythranthe guttata HOM05D004292 ORTHO05D005206 3.5e-98 362.1 250 68.8
FAN22G2140 Fragaria x ananassa HOM05D004292 ORTHO05D005206 6.0e-98 361.3 250 71.6
VMungo1215G3121 Vigna mungo HOM05D004292 ORTHO05D005206 1.3e-97 360.1 252 67.1
AL1G36680 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 2.3e-97 359.4 239 72.8
Migut.L00977 Erythranthe guttata HOM05D004292 ORTHO05D005206 2.3e-97 359.4 252 69.0
SalBow2G3034 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.3e-97 359.4 250 66.4
PSO478G0265 Papaver somniferum HOM05D004292 ORTHO05D005206 5.1e-97 358.2 251 68.9
PSO017G6162 Papaver somniferum HOM05D004292 ORTHO05D005206 6.6e-97 357.8 251 70.5
BcaB03g14168 Brassica carinata HOM05D004292 ORTHO05D005206 4.3e-96 355.1 250 69.6
Rhsim09G0095100 Rhododendron simsii HOM05D004292 ORTHO05D005206 3.6e-95 352.1 248 69.0
arahy.Tifrunner.gnm1.ann1.A6Q8V1 Arachis hypogaea HOM05D004292 ORTHO05D005206 1.4e-94 350.1 252 67.1
ClCG01G006270 Citrullus lanatus HOM05D004292 ORTHO05D005206 2.3e-94 349.4 250 66.8
HanXRQChr12g0364371 Helianthus annuus HOM05D004292 ORTHO05D005206 2.3e-94 349.4 253 67.6
Lsat_1_v5_gn_8_44580 Lactuca sativa HOM05D004292 ORTHO05D005206 4.0e-94 348.6 253 69.2
Sed0011413 Sechium edule HOM05D004292 ORTHO05D005206 4.0e-94 348.6 250 68.8
A07p14020 Brassica napus HOM05D004292 ORTHO05D005206 6.8e-94 347.8 243 70.0
BraA07t29156Z Brassica rapa HOM05D004292 ORTHO05D005206 6.8e-94 347.8 243 70.0
CsaV3_5G028400 Cucumis sativus L. HOM05D004292 ORTHO05D005206 1.2e-93 347.1 250 66.0
BcaC06g35023 Brassica carinata HOM05D004292 ORTHO05D005206 1.5e-93 346.7 274 64.2
C07p20600 Brassica napus HOM05D004292 ORTHO05D005206 1.5e-93 346.7 274 64.2
BolC7t42590H Brassica oleracea HOM05D004292 ORTHO05D005206 2.0e-93 346.3 243 69.5
MELO3C005303.2 Cucumis melo HOM05D004292 ORTHO05D005206 5.8e-93 344.7 250 65.6
ECA233G2687 Erigeron canadensis HOM05D004292 ORTHO05D005206 5.8e-93 344.7 251 67.3
SalBow8G2865 Salvia bowleyana HOM05D004292 ORTHO05D005206 2.2e-92 342.8 239 66.9
SalBow8G2030 Salvia bowleyana HOM05D004292 ORTHO05D005206 6.4e-92 341.3 239 66.9
AUR62014183 Chenopodium quinoa HOM05D004292 ORTHO05D005206 1.1e-91 340.5 250 66.4
TAR622G0066 Trochodendron aralioides HOM05D004292 ORTHO05D005206 2.1e-90 336.3 225 70.2
Os08g0433200 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 2.7e-90 335.9 251 65.7
Aa31LG4G10150 Aethionema arabicum HOM05D004292 ORTHO05D005206 7.8e-90 334.3 292 61.3
Hund10268 Selenicereus undatus HOM05D004292 ORTHO05D005206 3.0e-89 332.4 255 66.3
Dinv14417 Davidia involucrata HOM05D004292 ORTHO05D005206 5.1e-89 331.6 184 84.8
MBI19_g22783_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 5.1e-89 331.6 292 57.9
CDE05G3602 Ceratophyllum demersum HOM05D004292 ORTHO05D005206 7.3e-88 327.8 241 66.0
HPP92_009641 Vanilla planifolia HOM05D004292 ORTHO05D005206 1.4e-86 323.6 241 65.6
Ca_12594_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 6.9e-86 321.2 250 63.6
DCAR_023592 Daucus carota HOM05D004292 ORTHO05D005206 3.4e-85 318.9 250 64.8
Oeu018604.1 Olea europaea HOM05D004292 ORTHO05D005206 5.8e-85 318.2 174 87.9
Zm00001eb041560 Zea mays HOM05D004292 ORTHO05D005206 1.3e-84 317.0 256 62.9
Cpa.g.c36802 Carica papaya HOM05D004292 ORTHO05D005206 2.2e-84 316.2 201 75.1
Zm00001eb099420 Zea mays HOM05D004292 ORTHO05D005206 3.2e-83 312.4 266 58.6
Ah.03g137320 Amaranthus hybridus HOM05D004292 ORTHO05D001279 2.9e-76 289.3 175 77.1
DCAR_030229 Daucus carota HOM05D004292 ORTHO05D005206 4.9e-76 288.5 250 59.2
Lj6C744T5 Lonicera japonica HOM05D004292 ORTHO05D005206 6.4e-76 288.1 250 61.6
MBI12_g36036_MAGBIO Magnolia biondii HOM05D004292 ORTHO05D005206 2.7e-74 282.7 244 59.0
Cc11_g08440 Coffea canephora HOM05D004292 ORTHO05D005206 6.9e-70 268.1 186 72.6
vmacro10650 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 4.5e-69 265.4 147 86.4
vmacro10653 Vaccinium macrocarpon HOM05D004292 ORTHO05D005206 4.5e-69 265.4 147 86.4
Ca_12581_v3 Cicer arietinum L. HOM05D004292 ORTHO05D005206 5.5e-67 258.5 153 78.4
Gohir.A01G151400 Gossypium hirsutum HOM05D004292 ORTHO05D005206 1.3e-65 253.8 180 69.4
Mapoly0185s0002 Marchantia polymorpha HOM05D004292 ORTHO05D005206 8.7e-65 251.1 257 47.9
Pp3c24_11420 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.4e-54 217.2 180 57.2
SMO111G0032 Selaginella moellendorffii HOM05D004292 ORTHO05D005206 2.5e-51 206.5 175 59.4
unitig_699.g19535 Utricularia gibba HOM05D004292 ORTHO05D005206 2.7e-50 203.0 189 55.0
C06p45020 Brassica napus HOM05D004292 ORTHO05D005206 4.1e-46 189.1 187 55.1
BolC6t39560H Brassica oleracea HOM05D004292 ORTHO05D005206 4.1e-46 189.1 187 55.1
CDE05G3401 Ceratophyllum demersum HOM05D001044 ORTHO05D004551 6.1e-42 175.3 110 75.5
Pp3c7_7180 Physcomitrium patens HOM05D004292 ORTHO05D005206 1.1e-40 171.0 157 48.4
AagrBONN_evm.TU.Sc2ySwM_368.1350 Anthoceros agrestis HOM05D004292 ORTHO05D005206 1.8e-38 163.7 132 59.8
AL337U10010 Arabidopsis lyrata HOM05D004292 ORTHO05D005206 6.9e-38 161.8 88 85.2
Cc11_g08450 Coffea canephora HOM05D004292 ORTHO05D005206 3.8e-28 129.4 63 93.7
GSVIVG01038114001 Vitis vinifera HOM05D000242 ORTHO05D000631 5.0e-28 129.0 73 79.5
MD06G1224600 Malus domestica HOM05D004292 ORTHO05D005206 7.5e-24 115.2 73 69.9
Cre03.g173550 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.3e-23 114.4 174 36.8
DCAR_000574 Daucus carota HOM05D004292 ORTHO05D005206 1.8e-22 110.5 108 59.3
Cc07_g18460 Coffea canephora HOM05D004292 ORTHO05D005206 1.2e-21 107.8 75 74.7
C02p28370 Brassica napus HOM05D004292 ORTHO05D005206 1.6e-21 107.5 99 56.6
BolC2t08881H Brassica oleracea HOM05D004292 ORTHO05D005206 1.6e-21 107.5 99 56.6
PRCOL_00000603 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.0e-21 107.1 168 36.3
DCAR_009878 Daucus carota HOM05D004292 ORTHO05D005206 6.3e-15 85.5 83 59.0
DCAR_009985 Daucus carota HOM05D004292 ORTHO05D005206 8.3e-15 85.1 94 54.3
arahy.Tifrunner.gnm1.ann1.B49LBP Arachis hypogaea HOM05D004292 ORTHO05D005206 2.1e-10 70.5 52 59.6
Cre03.g160850 Chlamydomonas reinhardtii HOM05D004292 ORTHO05D005206 1.8e-09 67.4 172 29.1
Lj4g0003601 Lotus japonicus HOM05D000353 ORTHO05D000174 4.4e-08 62.8 38 78.9
arahy.Tifrunner.gnm1.ann1.06RDDY Arachis hypogaea HOM05D004292 ORTHO05D005206 5.7e-08 62.4 54 59.3
MCO07G095 Micromonas commoda HOM05D004292 ORTHO05D005206 1.7e-07 60.8 165 27.3
Os09g0411500 Oryza sativa ssp. japonica HOM05D004292 ORTHO05D005206 1.7e-07 60.8 47 59.6
arahy.Tifrunner.gnm1.ann1.A5SBZK Arachis hypogaea HOM05D004292 ORTHO05D005206 2.4e-06 57.0 65 44.6
BcaC05g26219 Brassica carinata HOM05D004292 ORTHO05D005206 2.4e-06 57.0 34 73.5
PRCOL_00001474 Prasinoderma coloniale HOM05D004292 ORTHO05D005206 2.4e-06 57.0 204 25.5


User provided reference genes

Program Settings