Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 5.1e-137 491.5 336 100.0
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 1.9e-123 446.4 365 87.9
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.1e-122 443.0 364 88.2
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 2.6e-112 409.5 365 83.6
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 2.1e-106 389.8 390 77.4
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.3e-103 380.6 366 73.8
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 3.4e-96 355.9 191 94.8
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.2e-85 320.9 365 61.9
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.6e-82 310.5 365 62.5
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 5.2e-81 305.4 365 62.7
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 4.4e-80 302.4 365 63.6
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 2.0e-64 250.4 365 44.1
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 7.9e-53 211.8 337 42.1
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 7.9e-53 211.8 344 42.7
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 4.8e-50 202.6 338 41.1
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 4.8e-50 202.6 347 40.3
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 1.8e-49 200.7 368 49.2
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 7.6e-48 195.3 114 84.2
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.7e-47 194.1 172 59.9
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 2.9e-47 193.4 336 38.4
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 4.9e-47 192.6 341 37.8
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 4.9e-47 192.6 393 43.8
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 8.4e-47 191.8 197 51.3
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 1.4e-46 191.0 381 45.4
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 1.9e-46 190.7 342 37.4
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.5e-46 190.3 337 38.9
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 4.2e-46 189.5 339 38.1
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 5.5e-46 189.1 336 39.6
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 7.1e-46 188.7 340 36.8
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 6.0e-45 185.7 348 37.6
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 1.0e-44 184.9 342 36.3
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 1.3e-44 184.5 175 57.7
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 3.0e-44 183.3 339 44.0
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 5.1e-44 182.6 341 36.1
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 1.1e-43 181.4 337 44.5
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.5e-43 181.0 343 37.9
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 1.9e-43 180.6 159 57.9
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 4.3e-43 179.5 319 35.7
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 9.6e-43 178.3 336 36.3
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 1.6e-42 177.6 185 51.9
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.6e-42 177.6 335 37.0
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 3.7e-42 176.4 159 56.0
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 8.2e-42 175.3 155 55.5
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 1.4e-41 174.5 340 35.3
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 1.4e-41 174.5 357 35.3
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 1.4e-41 174.5 186 52.2
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 4.0e-41 172.9 334 35.3
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 5.3e-41 172.6 340 35.6
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.0e-41 171.8 173 55.5
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 9.0e-41 171.8 173 55.5
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 1.5e-40 171.0 169 50.9
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 2.6e-40 170.2 161 50.9
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 2.6e-40 170.2 161 56.5
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 2.6e-40 170.2 179 50.3
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 4.5e-40 169.5 161 50.9
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 4.5e-40 169.5 339 51.0
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 1.0e-39 168.3 353 35.1
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 1.3e-39 167.9 171 53.8
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.3e-39 167.9 174 51.1
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 1.3e-39 167.9 90 94.4
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 2.2e-39 167.2 161 50.3
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 1.1e-38 164.9 343 37.3
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 1.4e-38 164.5 181 48.1
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 1.9e-38 164.1 343 34.7
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 2.5e-38 163.7 171 50.9
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 3.2e-38 163.3 337 35.6
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 5.5e-38 162.5 188 48.4
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 5.5e-38 162.5 339 35.7
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 7.1e-38 162.2 349 33.8
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 1.2e-37 161.4 346 43.1
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.2e-37 161.4 338 33.4
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 1.2e-37 161.4 339 32.4
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 2.1e-37 160.6 348 33.9
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 2.1e-37 160.6 341 33.1
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.7e-37 160.2 320 34.4
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 7.9e-37 158.7 345 40.3
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 7.9e-37 158.7 179 48.6
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 1.3e-36 157.9 338 34.6
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.3e-36 157.9 162 51.2
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 1.8e-36 157.5 338 33.4
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 2.3e-36 157.1 331 32.3
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 2.3e-36 157.1 187 44.9
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 6.7e-36 155.6 348 34.2
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 6.7e-36 155.6 170 48.2
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 8.7e-36 155.2 187 45.5
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 1.1e-35 154.8 208 43.8
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.5e-35 154.5 176 46.0
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 1.9e-35 154.1 375 33.1
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 2.5e-35 153.7 335 31.9
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 2.5e-35 153.7 178 50.0
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 5.7e-35 152.5 335 31.9
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 1.3e-34 151.4 189 46.6
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.6e-34 151.0 170 49.4
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 3.7e-34 149.8 157 53.5
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.7e-34 149.8 159 49.7
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 8.2e-34 148.7 179 47.5
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.1e-33 148.3 159 50.3
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 1.8e-33 147.5 151 50.3
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.8e-33 147.5 151 50.3
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 3.1e-33 146.7 209 41.6
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 3.1e-33 146.7 177 45.2
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 4.1e-33 146.4 146 52.7
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 6.9e-33 145.6 317 35.0
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.0e-33 145.2 317 32.2
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.0e-33 145.2 320 33.1
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.2e-32 144.8 142 47.2
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 1.5e-32 144.4 314 32.5
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 1.5e-32 144.4 178 46.6
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 3.4e-32 143.3 169 45.0
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 4.5e-32 142.9 339 36.0
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 4.5e-32 142.9 239 57.3
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 7.7e-32 142.1 158 48.1
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 7.7e-32 142.1 305 34.1
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 7.7e-32 142.1 193 40.9
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 1.0e-31 141.7 342 30.7
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 1.3e-31 141.4 148 49.3
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 1.3e-31 141.4 148 49.3
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.7e-31 141.0 158 46.8
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.7e-31 141.0 158 46.8
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 2.9e-31 140.2 142 47.2
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 5.0e-31 139.4 178 43.8
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 1.4e-30 137.9 148 48.0
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 2.5e-30 137.1 336 35.7
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 9.4e-30 135.2 156 44.2
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 1.2e-29 134.8 128 50.0
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 2.1e-29 134.0 310 33.5
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 4.6e-29 132.9 354 30.8
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 6.7e-28 129.0 175 42.3
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 6.7e-28 129.0 175 42.3
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 8.8e-28 128.6 157 43.9
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 1.1e-27 128.3 155 42.6
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 2.0e-27 127.5 138 45.7
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 4.3e-27 126.3 314 30.6
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 5.7e-27 125.9 166 45.8
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 7.4e-27 125.6 142 44.4
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 8.2e-26 122.1 141 45.4
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.8e-25 120.9 129 54.3
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 6.9e-25 119.0 105 53.3
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 1.5e-24 117.9 280 30.0
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 7.7e-24 115.5 129 42.6
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 1.3e-23 114.8 149 42.3
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 2.9e-23 113.6 153 39.2
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.4e-22 108.6 120 45.8
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.6e-21 107.8 133 42.9
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 1.8e-20 104.4 89 52.8
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 4.8e-18 96.3 179 35.8
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 4.8e-18 96.3 324 28.7
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 1.4e-17 94.7 266 28.9
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 2.4e-17 94.0 83 61.4
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 3.1e-17 93.6 96 49.0
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 1.2e-16 91.7 252 40.1
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 1.5e-16 91.3 94 50.0
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 2.6e-16 90.5 124 40.3
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 1.5e-14 84.7 157 38.9
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 7.2e-14 82.4 94 44.7
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 2.7e-13 80.5 113 40.7
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 2.0e-11 74.3 55 60.0
Nitab4.5_0001315g0090 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.7e-10 71.2 214 52.3
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 2.8e-10 70.5 79 44.3
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 1.8e-09 67.8 59 45.8
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 1.6e-08 64.7 121 30.6
Sabra01G0079000 Salix brachista HOM05D004296 ORTHO05D005045 5.0e-07 59.7 119 37.0


User provided reference genes

Program Settings