Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g007250.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.5e-150 535.4 266 100.0
Sopen04g002310 Solanum pennellii HOM05D004679 ORTHO05D005524 9.4e-142 506.9 266 95.9
PGSC0003DMG400005982 Solanum tuberosum HOM05D004679 ORTHO05D005524 3.7e-130 468.4 272 88.6
Nitab4.5_0005548g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 7.1e-73 278.1 259 63.3
Nitab4.5_0000057g0200 Nicotiana tabacum HOM05D004679 ORTHO05D005524 1.1e-68 264.2 263 60.1
Solyc05g009420.1 Solanum lycopersicum HOM05D004679 ORTHO05D005524 2.1e-61 240.0 304 49.0
Sopen05g005230 Solanum pennellii HOM05D004679 ORTHO05D005524 2.1e-61 240.0 304 49.0
Nitab4.5_0003715g0040 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.5e-59 232.3 306 46.1
Nitab4.5_0005669g0020 Nicotiana tabacum HOM05D004679 ORTHO05D005524 4.5e-59 232.3 306 47.4
PGSC0003DMG400014542 Solanum tuberosum HOM05D004679 ORTHO05D005524 1.3e-53 214.2 285 48.1
Dinv31629 Davidia involucrata HOM05D004679 ORTHO05D005524 1.6e-45 187.2 306 43.1
Cc11_g10010 Coffea canephora HOM05D004679 ORTHO05D005524 3.7e-45 186.0 317 38.8
Oeu003185.3 Olea europaea HOM05D004679 ORTHO05D005524 6.0e-40 168.7 301 41.2
MSTRG.848 Avicennia marina HOM05D004679 ORTHO05D005524 3.0e-39 166.4 313 36.7
Migut.L01056 Erythranthe guttata HOM05D004679 ORTHO05D005524 3.0e-39 166.4 321 35.5
SGA_v2.0_scaffold36G14543 Striga asiatica HOM05D004679 ORTHO05D005524 1.1e-38 164.5 288 38.9
SalBow8G2470 Salvia bowleyana HOM05D004679 ORTHO05D005524 1.9e-38 163.7 288 38.5
SGA_v2.0_scaffold38G14941 Striga asiatica HOM05D004679 ORTHO05D005524 7.4e-38 161.8 304 36.5
Oeu034235.1 Olea europaea HOM05D004679 ORTHO05D005524 4.8e-37 159.1 286 39.2
Rhsim09G0106900 Rhododendron simsii HOM05D004679 ORTHO05D005524 1.8e-36 157.1 285 38.6
TAR371G1108 Trochodendron aralioides HOM05D004679 ORTHO05D005524 5.9e-35 152.1 306 35.6
MSTRG.7662 Avicennia marina HOM05D004679 ORTHO05D005524 8.5e-34 148.3 315 34.3
CSS0006602 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.6e-32 142.9 306 35.6
CSS0017035 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 3.6e-32 142.9 304 34.9
Prupe.1G312600 Prunus persica HOM05D004679 ORTHO05D005524 1.8e-31 140.6 287 35.2
Lj6P756T16 Lonicera japonica HOM05D004679 ORTHO05D005524 2.3e-31 140.2 302 36.1
Actinidia16661 Actinidia chinensis HOM05D004679 ORTHO05D005524 3.0e-31 139.8 308 37.0
Potri.008G121700 Populus trichocarpa HOM05D004679 ORTHO05D005524 6.7e-31 138.7 322 33.5
MD13G1040500 Malus domestica HOM05D004679 ORTHO05D005524 1.1e-30 137.9 285 37.2
Hma1.2p1_0061F.1_g033750 Hydrangea macrophylla HOM05D004679 ORTHO05D005524 3.7e-29 132.9 315 33.7
Potri.010G123600 Populus trichocarpa HOM05D004679 ORTHO05D005524 1.8e-28 130.6 321 32.7
Thecc.02G227400 Theobroma cacao HOM05D004679 ORTHO05D005524 6.9e-28 128.6 315 33.7
Sabra08G0092400 Salix brachista HOM05D004679 ORTHO05D005524 1.2e-27 127.9 319 32.0
TWI79G1695 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.2e-27 127.9 304 34.2
Gorai.005G192000 Gossypium raimondii HOM05D004679 ORTHO05D005524 4.5e-27 125.9 311 33.1
CSS0014673 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 5.9e-27 125.6 304 34.9
Gohir.A03G147600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 1.0e-26 124.8 315 32.1
MD16G1041500 Malus domestica HOM05D004679 ORTHO05D005524 1.0e-26 124.8 283 34.6
Manes.06G066900 Manihot esculenta HOM05D004679 ORTHO05D005524 1.7e-26 124.0 318 32.4
Dinv21072 Davidia involucrata HOM05D004679 ORTHO05D005524 2.2e-26 123.6 231 38.1
CSS0010437 Camellia sinensis var. sinensis HOM05D004679 ORTHO05D005524 1.1e-25 121.3 309 35.0
Duzib268G0767 Durio zibethinus HOM05D004679 ORTHO05D005524 1.1e-25 121.3 315 31.7
Eucgr.B03012 Eucalyptus grandis HOM05D004679 ORTHO05D005524 2.5e-25 120.2 302 29.8
TAR629G3220 Trochodendron aralioides HOM05D004679 ORTHO05D005524 3.2e-25 119.8 307 31.6
TWI31G1336 Tripterygium wilfordii HOM05D004679 ORTHO05D005524 1.2e-24 117.9 295 33.2
FAN07G0705 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.6e-24 117.5 311 31.8
CANSAT01G1145 Cannabis sativa HOM05D004679 ORTHO05D005524 2.1e-24 117.1 275 33.1
Nn3g17866 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.7e-24 116.7 300 33.0
MELO3C012256.2 Cucumis melo HOM05D004679 ORTHO05D005524 7.9e-24 115.2 310 31.3
CsaV3_5G034410 Cucumis sativus L. HOM05D004679 ORTHO05D005524 1.0e-23 114.8 310 31.3
Sabra10G0093600 Salix brachista HOM05D004679 ORTHO05D005524 1.4e-23 114.4 320 30.9
Ciclev10015600m.g Citrus clementina HOM05D004679 ORTHO05D005524 2.3e-23 113.6 341 31.4
COL.COLO4_05113 Corchorus olitorius HOM05D004679 ORTHO05D005524 3.0e-23 113.2 316 32.6
FAN12G2517 Fragaria x ananassa HOM05D004679 ORTHO05D005524 3.0e-23 113.2 311 32.5
TPR.G27958 Trifolium pratense HOM05D004679 ORTHO05D005524 3.0e-23 113.2 303 30.7
FAN12G3270 Fragaria x ananassa HOM05D004679 ORTHO05D005524 5.1e-23 112.5 311 32.5
Peaxi162Scf00753g00057 Petunia axillaris HOM05D004679 ORTHO05D005524 5.1e-23 112.5 254 34.3
FvH4_4g27210 Fragaria vesca HOM05D004679 ORTHO05D005524 1.1e-22 111.3 311 32.5
Atru.chr11.115 Acer truncatum HOM05D004679 ORTHO05D005524 2.0e-22 110.5 338 29.3
Nn4g23867 Nelumbo nucifera HOM05D004679 ORTHO05D005524 2.0e-22 110.5 310 33.5
Psat2g095800 Pisum sativum HOM05D004679 ORTHO05D005524 2.0e-22 110.5 308 30.2
Phvul.003G030600 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 2.6e-22 110.2 299 30.4
Lalb_Chr04g0254681 Lupinus albus HOM05D004679 ORTHO05D005524 5.7e-22 109.0 284 33.1
MBI09_g16518_MAGBIO Magnolia biondii HOM05D004679 ORTHO05D005524 5.7e-22 109.0 300 32.0
THA.LOC104821925 Tarenaya hassleriana HOM05D004679 ORTHO05D005524 5.7e-22 109.0 287 31.4
FAN22G1304 Fragaria x ananassa HOM05D004679 ORTHO05D005524 1.3e-21 107.8 312 32.1
Glyma.08G261000 Glycine max HOM05D004679 ORTHO05D005524 1.3e-21 107.8 303 31.0
CiPaw.15G086800 Carya illinoinensis HOM05D004679 ORTHO05D005524 2.2e-21 107.1 297 32.0
VMungo1215G2497 Vigna mungo HOM05D004679 ORTHO05D005524 4.8e-21 105.9 299 30.4
Lj2g0027656 Lotus japonicus HOM05D004679 ORTHO05D005524 8.2e-21 105.1 284 33.5
CiPaw.16G065600 Carya illinoinensis HOM05D004679 ORTHO05D005524 1.4e-20 104.4 318 29.9
Duzib248G1266 Durio zibethinus HOM05D004679 ORTHO05D005524 1.8e-20 104.0 310 30.6
PGR102G2503 Punica granatum HOM05D004679 ORTHO05D005524 2.4e-20 103.6 305 30.5
Manes.14G103500 Manihot esculenta HOM05D004679 ORTHO05D005524 3.1e-20 103.2 313 31.0
Medtr5g056480 Medicago truncatula HOM05D004679 ORTHO05D005524 3.1e-20 103.2 314 29.6
RcHm_v2.0_Chr4g0435001 Rosa chinensis HOM05D004679 ORTHO05D005524 2.0e-19 100.5 315 30.8
Duzib251G0437 Durio zibethinus HOM05D004679 ORTHO05D005524 2.6e-19 100.1 303 29.0
DCAR_026738 Daucus carota HOM05D004679 ORTHO05D005524 2.2e-18 97.1 282 31.2
Sed0013939 Sechium edule HOM05D004679 ORTHO05D005524 2.9e-18 96.7 290 30.0
AT1G68440 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 6.5e-18 95.5 300 29.7
Gohir.D04G137600 Gossypium hirsutum HOM05D004679 ORTHO05D005524 8.5e-18 95.1 284 28.5
Gorai.012G122000 Gossypium raimondii HOM05D004679 ORTHO05D005524 1.1e-17 94.7 284 28.5
Ah.02g128020 Amaranthus hybridus HOM05D004679 ORTHO05D005524 4.2e-17 92.8 292 26.7
Ca_07534_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 5.5e-17 92.4 303 28.1
Gohir.A04G097850 Gossypium hirsutum HOM05D004679 ORTHO05D005524 5.5e-17 92.4 305 28.5
BcaB03g15806 Brassica carinata HOM05D004679 ORTHO05D005524 1.2e-16 91.3 294 28.2
Sc14g0007400 Simmondsia chinensis HOM05D004679 ORTHO05D005524 1.2e-16 91.3 304 30.3
CARHR061220 Cardamine hirsuta HOM05D004679 ORTHO05D005524 1.6e-16 90.9 308 25.6
BcaC08g46281 Brassica carinata HOM05D004679 ORTHO05D005524 2.1e-16 90.5 297 27.6
BcaC08g46285 Brassica carinata HOM05D004679 ORTHO05D005524 2.1e-16 90.5 297 27.6
BcaC03g14945 Brassica carinata HOM05D004679 ORTHO05D005524 2.7e-16 90.1 314 26.8
Glyma.01G080500 Glycine max HOM05D004679 ORTHO05D005524 2.7e-16 90.1 306 27.8
Sp5g23510 Schrenkiella parvula HOM05D004679 ORTHO05D005524 3.6e-16 89.7 321 27.4
BcaB05g24380 Brassica carinata HOM05D004679 ORTHO05D005524 4.7e-16 89.4 313 26.5
Lsat_1_v5_gn_4_15920 Lactuca sativa HOM05D004679 ORTHO05D005524 4.7e-16 89.4 249 31.3
arahy.Tifrunner.gnm1.ann1.ZDDP39 Arachis hypogaea HOM05D004679 ORTHO05D005524 1.8e-15 87.4 261 30.3
A02p14990 Brassica napus HOM05D004679 ORTHO05D005524 2.3e-15 87.0 320 27.2
C06p41510 Brassica napus HOM05D004679 ORTHO05D005524 2.3e-15 87.0 297 27.3
BolC6t39272H Brassica oleracea HOM05D004679 ORTHO05D005524 2.3e-15 87.0 297 27.3
BolC2t08557H Brassica oleracea HOM05D004679 ORTHO05D005524 3.9e-15 86.3 320 26.9
C02p24550 Brassica napus HOM05D004679 ORTHO05D005524 5.2e-15 85.9 318 25.8
Cpa.g.sc1.28 Carica papaya HOM05D004679 ORTHO05D005524 5.2e-15 85.9 183 33.3
A07p34850 Brassica napus HOM05D004679 ORTHO05D005524 1.1e-14 84.7 296 27.7
BraA02t06566Z Brassica rapa HOM05D004679 ORTHO05D005524 1.1e-14 84.7 318 26.7
Cfa018585 Carpinus fangiana HOM05D004679 ORTHO05D005524 3.3e-14 83.2 294 28.6
Eucgr.G02311 Eucalyptus grandis HOM05D004679 ORTHO05D005524 3.3e-14 83.2 273 28.2
Lalb_Chr10g0100061 Lupinus albus HOM05D004679 ORTHO05D005524 3.3e-14 83.2 289 28.0
Psat6g226440 Pisum sativum HOM05D004679 ORTHO05D005524 3.3e-14 83.2 238 31.1
AT1G25400 Arabidopsis thaliana HOM05D004679 ORTHO05D005524 4.4e-14 82.8 272 28.7
Haze_17496 Corylus avellana HOM05D004679 ORTHO05D005524 1.7e-13 80.9 303 28.7
DCAR_030166 Daucus carota HOM05D004679 ORTHO05D005524 1.7e-13 80.9 266 30.1
Thhalv10018918m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 1.7e-13 80.9 307 27.4
Gohir.D02G170800 Gossypium hirsutum HOM05D004679 ORTHO05D005524 3.7e-13 79.7 276 30.1
QL01p041129 Quercus lobata HOM05D004679 ORTHO05D005524 8.2e-13 78.6 291 28.2
AL2G27300 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.8e-12 77.4 299 26.4
EL10Ac6g14380 Beta vulgaris HOM05D004679 ORTHO05D005524 4.1e-12 76.3 272 26.8
CARHR026080 Cardamine hirsuta HOM05D004679 ORTHO05D005524 4.1e-12 76.3 278 28.8
CDE06G1731 Ceratophyllum demersum HOM05D004679 ORTHO05D005524 1.2e-11 74.7 263 27.0
Lalb_Chr21g0308861 Lupinus albus HOM05D004679 ORTHO05D005524 2.6e-11 73.6 230 27.8
Eucgr.D00333 Eucalyptus grandis HOM05D004679 ORTHO05D005524 6.5e-10 68.9 176 30.7
Thhalv10008406m.g Eutrema salsugineum HOM05D004679 ORTHO05D005524 6.5e-10 68.9 278 27.3
Ah.03g137540 Amaranthus hybridus HOM05D004679 ORTHO05D005524 1.9e-09 67.4 270 27.0
AL1G39920 Arabidopsis lyrata HOM05D004679 ORTHO05D005524 1.9e-09 67.4 273 27.1
Carub.0002s1495 Capsella rubella HOM05D004679 ORTHO05D005524 1.9e-09 67.4 298 25.8
BcaB03g14040 Brassica carinata HOM05D004679 ORTHO05D005524 2.5e-09 67.0 281 28.1
A07p12580 Brassica napus HOM05D004679 ORTHO05D005524 2.5e-09 67.0 260 28.8
Carub.0001s2510 Capsella rubella HOM05D004679 ORTHO05D005524 2.5e-09 67.0 269 27.9
Glyma.10G273200 Glycine max HOM05D004679 ORTHO05D005524 2.5e-09 67.0 239 28.5
Phvul.007G028300 Phaseolus vulgaris HOM05D004679 ORTHO05D005524 1.2e-08 64.7 161 32.3
Glyma.20G116700 Glycine max HOM05D004679 ORTHO05D005524 1.6e-08 64.3 151 32.5
VMungo0720G2998 Vigna mungo HOM05D004679 ORTHO05D005524 2.1e-08 63.9 241 28.2
BraA07t29036Z Brassica rapa HOM05D004679 ORTHO05D005524 2.7e-08 63.5 263 28.9
Sed0007978 Sechium edule HOM05D004679 ORTHO05D005524 3.6e-08 63.2 281 26.3
Sp1g22820 Schrenkiella parvula HOM05D004679 ORTHO05D005524 8.0e-08 62.0 282 27.0
AUR62035202 Chenopodium quinoa HOM05D004679 ORTHO05D005524 1.0e-07 61.6 209 30.1
ClCG08G005010 Citrullus lanatus HOM05D004679 ORTHO05D005524 5.2e-07 59.3 314 25.5
BcaC06g35214 Brassica carinata HOM05D004679 ORTHO05D005524 6.7e-07 58.9 277 25.6
C07p18590 Brassica napus HOM05D004679 ORTHO05D005524 6.7e-07 58.9 277 25.6
BolC7t42370H Brassica oleracea HOM05D004679 ORTHO05D005524 6.7e-07 58.9 277 25.6
Ca_11162_v3 Cicer arietinum L. HOM05D004679 ORTHO05D005524 2.0e-06 57.4 246 26.0
TPR.G18826 Trifolium pratense HOM05D004679 ORTHO05D005524 2.0e-06 57.4 267 26.2
MELO3C011535.2 Cucumis melo HOM05D004679 ORTHO05D005524 2.6e-06 57.0 293 25.3
HanXRQChr16g0529431 Helianthus annuus HOM05D004679 ORTHO05D005524 5.7e-06 55.8 248 25.4


User provided reference genes

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