Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g005530.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 6.4e-116 421.0 250 100.0
Sopen04g001550 Solanum pennellii HOM05D003448 ORTHO05D004028 4.7e-95 351.7 191 99.5
PGSC0003DMG400002851 Solanum tuberosum HOM05D003448 ORTHO05D004028 1.2e-90 337.0 191 95.8
Nitab4.5_0007467g0030 Nicotiana tabacum HOM05D003448 ORTHO05D004028 5.5e-67 258.5 193 75.1
Nitab4.5_0000014g0220 Nicotiana tabacum HOM05D003448 ORTHO05D004028 6.3e-55 218.4 171 75.4
Cc11_g12520 Coffea canephora HOM05D003448 ORTHO05D004028 4.2e-43 179.1 185 57.3
Peaxi162Scf00187g00126 Petunia axillaris HOM05D003448 ORTHO05D004028 1.8e-38 163.7 187 56.1
Dinv34100 Davidia involucrata HOM05D003448 ORTHO05D004028 3.1e-38 162.9 189 53.4
Oeu057654.1 Olea europaea HOM05D003448 ORTHO05D004028 3.1e-38 162.9 189 54.0
MSTRG.2328 Avicennia marina HOM05D003448 ORTHO05D004028 1.7e-36 157.1 188 52.7
SGA_v2.0_scaffold287G47147 Striga asiatica HOM05D003448 ORTHO05D004028 1.7e-36 157.1 182 54.9
CSS0040782 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 2.7e-34 149.8 186 49.5
Lsat_1_v5_gn_3_51801 Lactuca sativa HOM05D003448 ORTHO05D004028 4.7e-34 149.1 187 49.7
SalBow8G5474 Salvia bowleyana HOM05D003448 ORTHO05D004028 5.2e-33 145.6 187 51.3
Cfa008923 Carpinus fangiana HOM05D003448 ORTHO05D004028 2.6e-32 143.3 191 50.8
Prupe.1G280200 Prunus persica HOM05D003448 ORTHO05D004028 2.6e-32 143.3 181 46.4
Migut.E00067 Erythranthe guttata HOM05D003448 ORTHO05D004028 5.7e-32 142.1 187 50.8
MD16G1066700 Malus domestica HOM05D003448 ORTHO05D004028 9.7e-32 141.4 181 47.0
CANSAT64G1203 Cannabis sativa HOM05D003448 ORTHO05D004028 2.2e-31 140.2 188 47.3
Hma1.2p1_0357F.1_g134310 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 2.8e-31 139.8 185 48.1
A02p33350 Brassica napus HOM05D003448 ORTHO05D004028 1.4e-30 137.5 193 44.6
THA.LOC104801852 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 3.1e-30 136.3 182 48.4
CiPaw.05G129300 Carya illinoinensis HOM05D003448 ORTHO05D004028 5.3e-30 135.6 185 47.0
Actinidia12305 Actinidia chinensis HOM05D003448 ORTHO05D004028 7.0e-30 135.2 190 45.8
Atru.chr11.1709 Acer truncatum HOM05D003448 ORTHO05D004028 1.6e-29 134.0 190 47.4
Gorai.005G143200 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.6e-29 134.0 185 45.9
Lsat_1_v5_gn_4_10361 Lactuca sativa HOM05D003448 ORTHO05D004028 1.6e-29 134.0 179 47.5
TAR371G0373 Trochodendron aralioides HOM05D003448 ORTHO05D004028 1.6e-29 134.0 186 45.2
Gohir.D02G127600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 2.0e-29 133.7 185 45.9
Atru.chr11.1710 Acer truncatum HOM05D003448 ORTHO05D004028 2.6e-29 133.3 196 45.9
Manes.01G031900 Manihot esculenta HOM05D003448 ORTHO05D004028 2.6e-29 133.3 188 47.3
unitig_8.g3960 Utricularia gibba HOM05D003448 ORTHO05D004028 7.7e-29 131.7 185 43.8
RcHm_v2.0_Chr4g0439081 Rosa chinensis HOM05D003448 ORTHO05D004028 2.9e-28 129.8 192 43.2
TAR371G1243 Trochodendron aralioides HOM05D003448 ORTHO05D004028 5.0e-28 129.0 185 46.5
Cpa.g.sc1.73 Carica papaya HOM05D003448 ORTHO05D004028 8.5e-28 128.3 185 44.9
FvH4_4g30670 Fragaria vesca HOM05D003448 ORTHO05D004028 1.1e-27 127.9 188 45.7
BcaB07g30674 Brassica carinata HOM05D003448 ORTHO05D004028 1.5e-27 127.5 174 47.1
Potri.010G163300 Populus trichocarpa HOM05D003448 ORTHO05D004028 2.5e-27 126.7 175 48.6
Thecc.02G338900 Theobroma cacao HOM05D003448 ORTHO05D004028 2.5e-27 126.7 188 43.1
Ciclev10033637m.g Citrus clementina HOM05D003448 ORTHO05D004028 4.2e-27 125.9 186 45.7
HanXRQChr12g0379221 Helianthus annuus HOM05D003448 ORTHO05D004028 5.5e-27 125.6 181 48.1
Duzib251G0906 Durio zibethinus HOM05D003448 ORTHO05D004028 7.2e-27 125.2 182 43.4
QL03p069872 Quercus lobata HOM05D003448 ORTHO05D004028 7.2e-27 125.2 180 45.0
AL5G13040 Arabidopsis lyrata HOM05D003448 ORTHO05D004028 1.2e-26 124.4 184 44.6
RcHm_v2.0_Chr4g0439091 Rosa chinensis HOM05D003448 ORTHO05D004028 3.6e-26 122.9 187 41.2
Duzib248G1355 Durio zibethinus HOM05D003448 ORTHO05D004028 8.0e-26 121.7 185 43.8
Aa31LG2G7210 Aethionema arabicum HOM05D003448 ORTHO05D004028 1.4e-25 120.9 189 42.3
EL10Ac6g13273 Beta vulgaris HOM05D003448 ORTHO05D004028 1.4e-25 120.9 185 43.8
Thhalv10005445m.g Eutrema salsugineum HOM05D003448 ORTHO05D004028 1.4e-25 120.9 191 44.5
Hund25204 Selenicereus undatus HOM05D003448 ORTHO05D004028 2.3e-25 120.2 194 41.2
Manes.05G106600 Manihot esculenta HOM05D003448 ORTHO05D004028 4.0e-25 119.4 184 44.0
A09p24360 Brassica napus HOM05D003448 ORTHO05D004028 6.7e-25 118.6 167 46.1
BraA09t38029Z Brassica rapa HOM05D003448 ORTHO05D004028 6.7e-25 118.6 167 46.1
Eucgr.G02471 Eucalyptus grandis HOM05D003448 ORTHO05D004028 1.5e-24 117.5 181 43.1
Potri.008G091600 Populus trichocarpa HOM05D003448 ORTHO05D004028 1.5e-24 117.5 179 44.1
Sabra08G0068600 Salix brachista HOM05D003448 ORTHO05D004028 2.6e-24 116.7 184 43.5
CARHR145690 Cardamine hirsuta HOM05D003448 ORTHO05D004028 3.3e-24 116.3 186 42.5
Nitab4.5_0000391g0120 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.3e-24 116.3 182 43.4
BcaB07g30304 Brassica carinata HOM05D003448 ORTHO05D004028 4.4e-24 115.9 171 43.9
BcaC04g21492 Brassica carinata HOM05D003448 ORTHO05D004028 5.7e-24 115.5 167 44.9
C09p31190 Brassica napus HOM05D003448 ORTHO05D004028 5.7e-24 115.5 167 44.9
BolC9t55975H Brassica oleracea HOM05D003448 ORTHO05D004028 5.7e-24 115.5 167 44.9
AT3G11810 Arabidopsis thaliana HOM05D003448 ORTHO05D004028 7.5e-24 115.2 189 43.4
Sp2g14260 Schrenkiella parvula HOM05D003448 ORTHO05D004028 3.7e-23 112.8 188 42.0
DCAR_023813 Daucus carota HOM05D003448 ORTHO05D004028 8.2e-23 111.7 188 41.0
AUR62032847 Chenopodium quinoa HOM05D003448 ORTHO05D004028 1.8e-22 110.5 185 40.5
THA.LOC104824071 Tarenaya hassleriana HOM05D003448 ORTHO05D004028 2.4e-22 110.2 189 40.2
CSS0006655 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 3.1e-22 109.8 188 41.0
Nitab4.5_0000391g0160 Nicotiana tabacum HOM05D003448 ORTHO05D004028 3.1e-22 109.8 186 41.9
Nitab4.5_0004471g0060 Nicotiana tabacum HOM05D003448 ORTHO05D004028 7.0e-22 108.6 182 42.9
Peaxi162Scf00222g00119 Petunia axillaris HOM05D003448 ORTHO05D004028 7.0e-22 108.6 173 43.9
Nitab4.5_0000391g0110 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.2e-21 107.8 181 40.9
PGR016G0005 Punica granatum HOM05D003448 ORTHO05D004028 1.6e-21 107.5 185 40.0
PGR119G2543 Punica granatum HOM05D003448 ORTHO05D004028 1.6e-21 107.5 185 40.0
Glyma.20G030300 Glycine max HOM05D003448 ORTHO05D004028 2.7e-21 106.7 146 46.6
Ca_25944_v3 Cicer arietinum L. HOM05D003448 ORTHO05D004028 4.5e-21 105.9 146 47.3
Medtr4g082550 Medicago truncatula HOM05D003448 ORTHO05D004028 7.7e-21 105.1 165 48.5
Carub.0005s0231 Capsella rubella HOM05D003448 ORTHO05D004028 1.0e-20 104.8 179 43.0
Gorai.013G089800 Gossypium raimondii HOM05D003448 ORTHO05D004028 1.7e-20 104.0 182 41.2
Gorai.013G089600 Gossypium raimondii HOM05D003448 ORTHO05D004028 2.9e-20 103.2 182 42.9
Psat7g154240 Pisum sativum HOM05D003448 ORTHO05D004028 3.8e-20 102.8 173 44.5
arahy.Tifrunner.gnm1.ann1.57BZA4 Arachis hypogaea HOM05D003448 ORTHO05D004028 6.5e-20 102.1 155 46.5
Gohir.D13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 6.5e-20 102.1 182 42.3
Ah.03g134640 Amaranthus hybridus HOM05D003448 ORTHO05D004028 8.5e-20 101.7 185 38.4
Oeu021088.1 Olea europaea HOM05D003448 ORTHO05D004028 1.1e-19 101.3 185 37.8
BcaC03g17206 Brassica carinata HOM05D003448 ORTHO05D004028 1.5e-19 100.9 174 39.7
Gohir.A13G078300 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.5e-19 100.9 168 41.7
Aqoxy3G03502 Aquilegia oxysepala HOM05D003448 ORTHO05D004028 1.9e-19 100.5 196 35.7
Nitab4.5_0004471g0010 Nicotiana tabacum HOM05D003448 ORTHO05D004028 1.9e-19 100.5 181 40.3
Lsat_1_v5_gn_8_49320 Lactuca sativa HOM05D003448 ORTHO05D004028 2.5e-19 100.1 171 44.4
Eucgr.G02473 Eucalyptus grandis HOM05D003448 ORTHO05D004028 3.2e-19 99.8 179 39.7
CANSAT64G0892 Cannabis sativa HOM05D003448 ORTHO05D004028 1.2e-18 97.8 186 34.4
Hma1.2p1_0354F.1_g133775 Hydrangea macrophylla HOM05D003448 ORTHO05D004028 2.1e-18 97.1 193 38.9
Glyma.07G227750 Glycine max HOM05D003448 ORTHO05D004028 6.1e-18 95.5 143 48.3
Lsat_1_v5_gn_8_49260 Lactuca sativa HOM05D003448 ORTHO05D004028 8.0e-18 95.1 178 41.6
Gohir.A13G078400 Gossypium hirsutum HOM05D003448 ORTHO05D004028 1.8e-17 94.0 170 40.0
HanXRQChr12g0361771 Helianthus annuus HOM05D003448 ORTHO05D004028 4.0e-17 92.8 182 39.0
Gohir.D13G078600 Gossypium hirsutum HOM05D003448 ORTHO05D004028 5.2e-17 92.4 170 40.0
Lalb_Chr05g0220171 Lupinus albus HOM05D003448 ORTHO05D004028 6.8e-17 92.0 154 45.5
Gorai.013G089900 Gossypium raimondii HOM05D003448 ORTHO05D004028 8.8e-17 91.7 170 39.4
Migut.L01240 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.5e-16 90.9 179 36.3
Glyma.20G030600 Glycine max HOM05D003448 ORTHO05D004028 2.6e-16 90.1 183 38.3
HanXRQChr12g0362021 Helianthus annuus HOM05D003448 ORTHO05D004028 2.6e-16 90.1 183 41.0
Peaxi162Scf00222g00125 Petunia axillaris HOM05D003448 ORTHO05D004028 2.6e-16 90.1 180 38.3
Solyc05g012850.3 Solanum lycopersicum HOM05D003448 ORTHO05D004028 1.7e-15 87.4 183 35.5
Sopen05g007660 Solanum pennellii HOM05D003448 ORTHO05D004028 1.7e-15 87.4 183 35.0
SGA_v2.0_scaffold36G14418 Striga asiatica HOM05D003448 ORTHO05D004028 1.7e-15 87.4 179 35.8
COL.COLO4_27963 Corchorus olitorius HOM05D003448 ORTHO05D004028 2.8e-15 86.7 177 33.9
Lsat_1_v5_gn_8_49220 Lactuca sativa HOM05D003448 ORTHO05D004028 2.8e-15 86.7 187 34.8
Sopen05g007670 Solanum pennellii HOM05D003448 ORTHO05D004028 4.8e-15 85.9 183 36.1
Migut.L01238 Erythranthe guttata HOM05D003448 ORTHO05D004028 6.3e-15 85.5 181 34.3
Migut.L01237 Erythranthe guttata HOM05D003448 ORTHO05D004028 1.8e-14 84.0 191 33.0
Lj6P783T35 Lonicera japonica HOM05D003448 ORTHO05D004028 1.8e-14 84.0 81 55.6
PGSC0003DMG400046292 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.4e-14 83.6 183 35.0
BraA02t08358Z Brassica rapa HOM05D003448 ORTHO05D024613 3.1e-14 83.2 107 45.8
SalBow2G2818 Salvia bowleyana HOM05D003448 ORTHO05D004028 4.1e-14 82.8 185 33.0
SalBow2G2694 Salvia bowleyana HOM05D003448 ORTHO05D004028 5.4e-14 82.4 194 32.5
Lsat_1_v5_gn_8_49200 Lactuca sativa HOM05D003448 ORTHO05D004028 9.1e-14 81.6 187 34.8
Oeu016239.1 Olea europaea HOM05D006937 ORTHO05D008747 9.1e-14 81.6 99 45.5
Phvul.002G168700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 9.1e-14 81.6 179 37.4
SalBow2G2515 Salvia bowleyana HOM05D003448 ORTHO05D004028 1.2e-13 81.3 185 31.9
BcaC03g17208 Brassica carinata HOM05D003448 ORTHO05D004028 2.0e-13 80.5 130 40.8
Nitab4.5_0000391g0130 Nicotiana tabacum HOM05D003448 ORTHO05D004028 2.0e-13 80.5 162 38.9
Phvul.002G103700 Phaseolus vulgaris HOM05D003448 ORTHO05D004028 2.0e-13 80.5 157 41.4
MSTRG.734 Avicennia marina HOM05D003448 ORTHO05D004028 2.7e-13 80.1 142 42.3
Lsat_1_v5_gn_8_49240 Lactuca sativa HOM05D003448 ORTHO05D004028 2.7e-13 80.1 180 35.0
Cc11_g07300 Coffea canephora HOM05D003448 ORTHO05D004028 7.7e-13 78.6 178 36.0
COL.COLO4_27962 Corchorus olitorius HOM05D003448 ORTHO05D004028 1.0e-12 78.2 179 35.8
Sopen05g007690 Solanum pennellii HOM05D003448 ORTHO05D004028 3.8e-12 76.3 157 35.0
Lj4g0008688 Lotus japonicus HOM05D003448 ORTHO05D004028 6.5e-12 75.5 158 38.0
Solyc05g012860.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 6.5e-12 75.5 157 35.0
VMungo0251G1914 Vigna mungo HOM05D003448 ORTHO05D004028 8.6e-12 75.1 166 34.9
ATR0730G136 Amborella trichopoda HOM05D003448 ORTHO05D004028 1.5e-11 74.3 171 34.5
Psat7g153440 Pisum sativum HOM05D003448 ORTHO05D004028 1.5e-11 74.3 166 34.9
Lalb_Chr09g0329141 Lupinus albus HOM05D003448 ORTHO05D004028 2.5e-11 73.6 168 33.3
Solyc05g012820.2 Solanum lycopersicum HOM05D003448 ORTHO05D004028 2.5e-11 73.6 154 33.1
Medtr4g082355 Medicago truncatula HOM05D003448 ORTHO05D004028 4.2e-11 72.8 144 34.0
BcaC03g17209 Brassica carinata HOM05D003448 ORTHO05D004028 5.5e-11 72.4 114 41.2
VMungo0251G3339 Vigna mungo HOM05D003448 ORTHO05D004028 5.5e-11 72.4 165 35.8
Medtr4g082360 Medicago truncatula HOM05D003448 ORTHO05D004028 7.2e-11 72.0 167 34.7
C02p51330 Brassica napus HOM05D003448 ORTHO05D024613 1.6e-10 70.9 63 58.7
C02p51360 Brassica napus HOM05D003448 ORTHO05D024613 1.6e-10 70.9 63 58.7
BolC2t11225H Brassica oleracea HOM05D003448 ORTHO05D024613 1.6e-10 70.9 63 58.7
BolC2t11227H Brassica oleracea HOM05D003448 ORTHO05D024613 1.6e-10 70.9 63 58.7
PGSC0003DMG400028404 Solanum tuberosum HOM05D003448 ORTHO05D004028 2.8e-10 70.1 174 32.2
SEGI_06194 Sequoiadendron giganteum HOM05D003448 ORTHO05D004028 1.0e-09 68.2 186 33.3
Migut.L01239 Erythranthe guttata HOM05D003448 ORTHO05D004028 3.0e-09 66.6 172 35.5
TPR.G38090 Trifolium pratense HOM05D003448 ORTHO05D004028 4.0e-09 66.2 141 38.3
TPR.G36791 Trifolium pratense HOM05D003448 ORTHO05D004028 2.0e-08 63.9 149 37.6
CSS0034838 Camellia sinensis var. sinensis HOM05D003448 ORTHO05D004028 3.4e-08 63.2 194 30.9
Medtr4g082365 Medicago truncatula HOM05D003448 ORTHO05D004028 7.5e-08 62.0 154 31.2
Prupe.1G277700 Prunus persica HOM05D003448 ORTHO05D004028 1.3e-07 61.2 171 34.5
RcHm_v2.0_Chr5g0060931 Rosa chinensis HOM05D003448 ORTHO05D004028 1.7e-07 60.8 153 32.0
COL.COLO4_27959 Corchorus olitorius HOM05D003448 ORTHO05D004028 4.9e-07 59.3 130 36.9
Glyma.20G030700 Glycine max HOM05D003448 ORTHO05D004028 6.3e-07 58.9 175 31.4
Psat7g135520 Pisum sativum HOM05D003448 ORTHO05D004028 8.3e-07 58.5 144 34.0
TPR.G11298 Trifolium pratense HOM05D003448 ORTHO05D004028 2.4e-06 57.0 141 34.8
Sopen05g007650 Solanum pennellii HOM05D003448 ORTHO05D004028 9.2e-06 55.1 97 37.1


User provided reference genes

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