Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g005520.3 Solanum lycopersicum HOM05D007053 ORTHO05D008922 2.5e-184 648.7 328 100.0
Sopen04g001540 Solanum pennellii HOM05D007053 ORTHO05D008922 1.0e-182 643.3 328 99.1
PGSC0003DMG400002850 Solanum tuberosum HOM05D007053 ORTHO05D008922 5.7e-173 610.9 339 92.3
CAN.G765.42 Capsicum annuum HOM05D007053 ORTHO05D008922 5.7e-165 584.3 312 94.6
Peaxi162Scf00187g00127 Petunia axillaris HOM05D007053 ORTHO05D008922 1.2e-149 533.5 330 83.0
Nitab4.5_0011225g0030 Nicotiana tabacum HOM05D007053 ORTHO05D008922 8.3e-148 527.3 308 88.6
Dinv16695 Davidia involucrata HOM05D007053 ORTHO05D008922 1.5e-141 506.5 319 78.1
FAN22G2353 Fragaria x ananassa HOM05D007053 ORTHO05D008922 1.0e-137 493.8 321 75.1
Nitab4.5_0000014g0210 Nicotiana tabacum HOM05D007053 ORTHO05D008922 1.0e-137 493.8 270 93.3
CSS0045311 Camellia sinensis var. sinensis HOM05D007053 ORTHO05D008922 1.7e-137 493.0 321 76.6
Cfa008919 Carpinus fangiana HOM05D007053 ORTHO05D008922 2.9e-137 492.3 328 75.9
CSS0030124 Camellia sinensis var. sinensis HOM05D007053 ORTHO05D008922 1.9e-136 489.6 321 76.0
FAN07G1757 Fragaria x ananassa HOM05D007053 ORTHO05D008922 3.3e-136 488.8 321 74.8
Manes.01G031400 Manihot esculenta HOM05D007053 ORTHO05D008922 5.6e-136 488.0 320 75.6
GSVIVG01001339001 Vitis vinifera HOM05D007053 ORTHO05D008922 7.3e-136 487.6 320 75.3
FAN22G1358 Fragaria x ananassa HOM05D007053 ORTHO05D008922 9.5e-136 487.3 319 74.9
RcHm_v2.0_Chr4g0439031 Rosa chinensis HOM05D007053 ORTHO05D008922 3.6e-135 485.3 321 74.1
Potri.010G162900 Populus trichocarpa HOM05D007053 ORTHO05D008922 4.7e-135 485.0 320 75.9
CiPaw.06G089300 Carya illinoinensis HOM05D007053 ORTHO05D008922 1.8e-134 483.0 328 74.7
FvH4_4g30620 Fragaria vesca HOM05D007053 ORTHO05D008922 2.3e-134 482.6 321 74.1
FAN17G2706 Fragaria x ananassa HOM05D007053 ORTHO05D008922 3.0e-134 482.3 321 74.5
TAR629G2828 Trochodendron aralioides HOM05D007053 ORTHO05D008922 1.2e-133 480.3 318 76.4
MSTRG.7772 Avicennia marina HOM05D007053 ORTHO05D008922 1.5e-133 479.9 318 75.8
Sabra10G0123900 Salix brachista HOM05D007053 ORTHO05D008922 1.5e-133 479.9 319 76.2
Actinidia33234 Actinidia chinensis HOM05D007053 ORTHO05D008922 4.9e-132 474.9 321 73.8
Cc11_g12440 Coffea canephora HOM05D007053 ORTHO05D008922 4.9e-132 474.9 318 75.2
Migut.L01233 Erythranthe guttata HOM05D007053 ORTHO05D008922 3.2e-131 472.2 319 74.3
MD13G1067400 Malus domestica HOM05D007053 ORTHO05D008922 7.0e-131 471.1 322 73.9
Duzib248G0053 Durio zibethinus HOM05D007053 ORTHO05D008922 1.2e-130 470.3 327 72.2
PGR102G0611 Punica granatum HOM05D007053 ORTHO05D008922 1.2e-130 470.3 324 72.2
Atru.chr11.1705 Acer truncatum HOM05D007053 ORTHO05D008922 2.7e-130 469.2 321 73.2
Thecc.02G338500 Theobroma cacao HOM05D007053 ORTHO05D008922 5.9e-130 468.0 327 72.5
CANSAT64G1913 Cannabis sativa HOM05D007053 ORTHO05D008922 1.0e-129 467.2 316 74.1
Lsat_1_v5_gn_8_46861 Lactuca sativa HOM05D007053 ORTHO05D008922 3.0e-129 465.7 330 71.5
Gohir.A13G079000 Gossypium hirsutum HOM05D007053 ORTHO05D008922 5.0e-129 464.9 327 72.8
Lj3A1033T59 Lonicera japonica HOM05D007053 ORTHO05D008922 4.3e-128 461.8 331 71.0
HanXRQChr08g0211061 Helianthus annuus HOM05D007053 ORTHO05D008922 5.6e-128 461.5 323 71.5
Aqoxy3G03518 Aquilegia oxysepala HOM05D007053 ORTHO05D008922 7.3e-128 461.1 318 72.3
AL1G39090 Arabidopsis lyrata HOM05D007053 ORTHO05D008922 7.3e-128 461.1 319 70.5
MELO3C002980.2 Cucumis melo HOM05D007053 ORTHO05D008922 2.1e-127 459.5 319 71.8
Gorai.013G090300 Gossypium raimondii HOM05D007053 ORTHO05D008922 2.8e-127 459.1 327 72.2
QL03p069977 Quercus lobata HOM05D007053 ORTHO05D008922 2.8e-127 459.1 326 72.4
Sc04g0007810 Simmondsia chinensis HOM05D007053 ORTHO05D008922 2.8e-127 459.1 318 73.3
PSO063G7037 Papaver somniferum HOM05D007053 ORTHO05D008922 4.7e-127 458.4 325 72.3
Rhsim12G0133300 Rhododendron simsii HOM05D007053 ORTHO05D008922 1.0e-126 457.2 326 72.7
Nn4g23303 Nelumbo nucifera HOM05D007053 ORTHO05D008922 2.3e-126 456.1 319 70.5
ECA233G1809 Erigeron canadensis HOM05D007053 ORTHO05D008922 3.1e-126 455.7 329 71.1
Eucgr.B03188 Eucalyptus grandis HOM05D007053 ORTHO05D008922 4.0e-126 455.3 324 71.0
ClCG09G022040 Citrullus lanatus HOM05D007053 ORTHO05D008922 5.2e-126 454.9 328 70.4
Carub.0001s2439 Capsella rubella HOM05D007053 ORTHO05D008922 8.9e-126 454.1 326 68.4
Thhalv10008165m.g Eutrema salsugineum HOM05D007053 ORTHO05D008922 8.9e-126 454.1 319 70.2
AT1G26640 Arabidopsis thaliana HOM05D007053 ORTHO05D008922 1.5e-125 453.4 321 69.5
CARHR025330 Cardamine hirsuta HOM05D007053 ORTHO05D008922 1.5e-125 453.4 320 70.0
Sed0004632 Sechium edule HOM05D007053 ORTHO05D008922 2.0e-125 453.0 318 71.1
PSO063G1507 Papaver somniferum HOM05D007053 ORTHO05D008922 9.8e-125 450.7 326 72.4
Sp1g22160 Schrenkiella parvula HOM05D007053 ORTHO05D008922 2.9e-124 449.1 319 68.7
Ciclev10031995m.g Citrus clementina HOM05D007053 ORTHO05D008922 1.1e-123 447.2 327 70.6
THA.LOC104808621 Tarenaya hassleriana HOM05D007053 ORTHO05D008922 1.1e-123 447.2 326 68.7
Lalb_Chr10g0098501 Lupinus albus HOM05D007053 ORTHO05D008922 9.2e-123 444.1 322 70.5
Ca_04893_v3 Cicer arietinum L. HOM05D007053 ORTHO05D008922 1.2e-122 443.7 318 70.8
Aa31LG7G8460 Aethionema arabicum HOM05D007053 ORTHO05D008922 1.6e-122 443.4 322 68.9
BolC5t31171H Brassica oleracea HOM05D007053 ORTHO05D008922 1.6e-122 443.4 322 68.0
Psat2g127520 Pisum sativum HOM05D007053 ORTHO05D008922 2.0e-122 443.0 326 69.6
C05p24370 Brassica napus HOM05D007053 ORTHO05D008922 3.5e-122 442.2 322 67.7
Haze_11947 Corylus avellana HOM05D007053 ORTHO05D008922 7.8e-122 441.0 328 69.8
TPR.G19934 Trifolium pratense HOM05D007053 ORTHO05D008922 7.8e-122 441.0 318 70.4
BcaC05g26403 Brassica carinata HOM05D007053 ORTHO05D008922 1.7e-121 439.9 322 67.7
A09p40050 Brassica napus HOM05D007053 ORTHO05D008922 2.3e-121 439.5 319 68.3
BraA09t39501Z Brassica rapa HOM05D007053 ORTHO05D008922 5.0e-121 438.3 319 68.3
Lj2g0014226 Lotus japonicus HOM05D007053 ORTHO05D008922 5.0e-121 438.3 318 69.8
Glyma.02G112200 Glycine max HOM05D007053 ORTHO05D008922 8.6e-121 437.6 318 70.4
Phvul.002G091000 Phaseolus vulgaris HOM05D007053 ORTHO05D008922 1.1e-120 437.2 322 68.6
Hund06137 Selenicereus undatus HOM05D007053 ORTHO05D008922 1.1e-120 437.2 311 71.7
AUR62005859 Chenopodium quinoa HOM05D007053 ORTHO05D008922 9.5e-120 434.1 334 67.4
Medtr5g042980 Medicago truncatula HOM05D007053 ORTHO05D008922 9.5e-120 434.1 318 69.8
FAN12G2464 Fragaria x ananassa HOM05D007053 ORTHO05D008922 1.1e-118 430.6 281 74.4
VMungo1215G2121 Vigna mungo HOM05D007053 ORTHO05D008922 2.0e-117 426.4 318 67.9
ATR0730G101 Amborella trichopoda HOM05D007053 ORTHO05D008922 4.9e-116 421.8 318 67.9
EL10Ac6g13278 Beta vulgaris HOM05D007053 ORTHO05D008922 1.4e-115 420.2 320 68.8
COL.COLO4_27954 Corchorus olitorius HOM05D007053 ORTHO05D008922 2.4e-115 419.5 327 67.0
CsaV3_5G025100 Cucumis sativus L. HOM05D007053 ORTHO05D008922 1.1e-110 404.1 279 71.0
arahy.Tifrunner.gnm1.ann1.8N8AS7 Arachis hypogaea HOM05D007053 ORTHO05D008922 1.2e-109 400.6 324 63.9
Oeu021091.2 Olea europaea HOM05D007053 ORTHO05D008922 7.6e-109 397.9 388 58.0
AUR62032851 Chenopodium quinoa HOM05D007053 ORTHO05D008922 1.3e-108 397.1 320 65.0
Zm00001eb370300 Zea mays HOM05D007053 ORTHO05D008922 9.6e-104 380.9 333 61.6
Prupe.1G280800 Prunus persica HOM05D007053 ORTHO05D008922 1.1e-102 377.5 319 61.1
SGA_v2.0_scaffold16G07742 Striga asiatica HOM05D007053 ORTHO05D008922 1.4e-102 377.1 346 59.8
unitig_699.g19912 Utricularia gibba HOM05D007053 ORTHO05D008922 5.8e-101 371.7 317 63.1
vmacro16354 Vaccinium macrocarpon HOM05D007053 ORTHO05D008922 4.9e-100 368.6 391 53.7
TWI79G1311 Tripterygium wilfordii HOM05D007053 ORTHO05D008922 9.3e-99 364.4 319 61.4
Ah.02g129320 Amaranthus hybridus HOM05D007053 ORTHO05D008922 5.6e-96 355.1 346 59.2
Pp3c3_35320 Physcomitrium patens HOM05D007053 ORTHO05D008922 1.3e-89 334.0 318 55.7
SMO116G0352 Selaginella moellendorffii HOM05D007053 ORTHO05D008922 3.3e-88 329.3 326 54.9
DCAR_030987 Daucus carota HOM05D007053 ORTHO05D008922 3.8e-84 315.8 227 70.5
Mapoly0180s0007 Marchantia polymorpha HOM05D007053 ORTHO05D008922 2.7e-82 309.7 320 52.8
MBI19_g40191_MAGBIO Magnolia biondii HOM05D007053 ORTHO05D008922 3.0e-81 306.2 205 75.1
AagrBONN_evm.TU.Sc2ySwM_228.2378 Anthoceros agrestis HOM05D007053 ORTHO05D008922 1.9e-67 260.4 294 50.0
QL03p070004 Quercus lobata HOM05D007053 ORTHO05D008922 6.3e-63 245.4 275 51.6
CBR_g29893 Chara braunii HOM05D007053 ORTHO05D008922 6.3e-55 218.8 357 39.5
Cre13.g579800 Chlamydomonas reinhardtii HOM05D007053 ORTHO05D008922 1.0e-52 211.5 301 42.5
CDE02G3282 Ceratophyllum demersum HOM05D007053 ORTHO05D008922 2.0e-48 197.2 185 60.0
Pp3c8_2060 Physcomitrium patens HOM05D007053 ORTHO05D008922 2.4e-46 190.3 195 53.3
arahy.Tifrunner.gnm1.ann1.L47GGJ Arachis hypogaea HOM05D007053 ORTHO05D008922 5.0e-44 182.6 163 57.7
SEGI_12600 Sequoiadendron giganteum HOM05D007053 ORTHO05D008922 6.7e-41 172.2 115 67.8
FAN17G3123 Fragaria x ananassa HOM05D007053 ORTHO05D008922 5.7e-40 169.1 104 78.8
CDE02G3739 Ceratophyllum demersum HOM05D007053 ORTHO05D008922 3.8e-36 156.4 106 70.8
MCO04G110 Micromonas commoda HOM05D007053 ORTHO05D008922 2.5e-19 100.5 229 34.9
Lsat_1_v5_gn_1_96520 Lactuca sativa HOM05D007053 ORTHO05D008922 8.6e-12 75.5 49 65.3
Lsat_1_v5_gn_5_96721 Lactuca sativa HOM05D007053 ORTHO05D008922 1.2e-10 71.6 51 64.7
SEGI_13989 Sequoiadendron giganteum HOM05D007053 ORTHO05D008922 1.6e-10 71.2 78 51.3
Os01g0764600 Oryza sativa ssp. japonica HOM05D007053 ORTHO05D008922 5.8e-08 62.8 83 43.4
AL2G14220 Arabidopsis lyrata HOM05D011085 ORTHO05D031413 4.1e-06 56.6 81 40.7


User provided reference genes

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