Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g123880.3 Solanum lycopersicum HOM05D005491 ORTHO05D006973 2.8e-168 595.1 289 100.0
Sopen03g041620 Solanum pennellii HOM05D005491 ORTHO05D006973 5.9e-166 587.4 289 98.3
PGSC0003DMG400009162 Solanum tuberosum HOM05D005491 ORTHO05D006973 5.4e-143 511.1 308 83.1
CAN.G790.23 Capsicum annuum HOM05D005491 ORTHO05D006973 6.8e-130 467.6 262 86.3
Nitab4.5_0002885g0050 Nicotiana tabacum HOM05D005491 ORTHO05D006973 4.7e-123 444.9 321 70.7
Nitab4.5_0001691g0110 Nicotiana tabacum HOM05D005491 ORTHO05D006973 1.2e-121 440.3 263 79.8
Peaxi162Scf00038g02533 Petunia axillaris HOM05D005491 ORTHO05D006973 2.6e-121 439.1 265 81.1
Dinv20356 Davidia involucrata HOM05D005491 ORTHO05D006973 8.4e-104 380.9 260 70.0
GSVIVG01016137001 Vitis vinifera HOM05D005491 ORTHO05D006973 1.3e-101 373.6 263 68.8
CSS0040638 Camellia sinensis var. sinensis HOM05D005491 ORTHO05D006973 3.7e-99 365.5 260 68.1
Thecc.06G064400 Theobroma cacao HOM05D005491 ORTHO05D006973 1.1e-98 364.0 265 64.5
RcHm_v2.0_Chr2g0150111 Rosa chinensis HOM05D005491 ORTHO05D006973 1.2e-97 360.5 258 66.3
Rhsim12G0214300 Rhododendron simsii HOM05D005491 ORTHO05D006973 1.5e-97 360.1 262 66.4
TAR383G0879 Trochodendron aralioides HOM05D005491 ORTHO05D006973 4.5e-97 358.6 255 65.9
MD09G1158800 Malus domestica HOM05D005491 ORTHO05D006973 5.8e-97 358.2 252 67.9
Sc15g0000930 Simmondsia chinensis HOM05D005491 ORTHO05D006973 6.5e-96 354.8 256 64.5
Lj6C21T3 Lonicera japonica HOM05D005491 ORTHO05D006973 8.4e-96 354.4 261 64.8
FvH4_6g37280 Fragaria vesca HOM05D005491 ORTHO05D006973 2.5e-95 352.8 258 65.1
vmacro17061 Vaccinium macrocarpon HOM05D005491 ORTHO05D006973 3.2e-95 352.4 260 65.4
Eucgr.F04012 Eucalyptus grandis HOM05D005491 ORTHO05D006973 1.6e-94 350.1 256 66.0
Duzib192G0032 Durio zibethinus HOM05D005491 ORTHO05D006973 4.6e-94 348.6 252 65.5
Gorai.009G118600 Gossypium raimondii HOM05D005491 ORTHO05D006973 4.6e-94 348.6 264 64.4
PGR102G1295 Punica granatum HOM05D005491 ORTHO05D006973 7.9e-94 347.8 261 65.1
Gohir.D05G114500 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.3e-93 347.1 285 61.1
Potri.010G250200 Populus trichocarpa HOM05D005491 ORTHO05D006973 1.8e-93 346.7 265 61.1
Ah.15g094670 Amaranthus hybridus HOM05D005491 ORTHO05D006973 5.1e-93 345.1 252 63.5
Nn2g12576 Nelumbo nucifera HOM05D005491 ORTHO05D006973 6.7e-93 344.7 264 62.5
Lj3g0002967 Lotus japonicus HOM05D005491 ORTHO05D006973 1.1e-92 344.0 255 65.9
Hund18611 Selenicereus undatus HOM05D005491 ORTHO05D006973 1.1e-92 344.0 286 58.0
CANSAT01G1753 Cannabis sativa HOM05D005491 ORTHO05D006973 1.5e-92 343.6 276 60.1
MELO3C006296.2 Cucumis melo HOM05D005491 ORTHO05D006973 2.5e-92 342.8 253 64.8
Atru.chr1.2698 Acer truncatum HOM05D005491 ORTHO05D006973 3.3e-92 342.4 254 63.0
CsaV3_3G010780 Cucumis sativus L. HOM05D005491 ORTHO05D006973 7.4e-92 341.3 253 64.4
FAN02G3895 Fragaria x ananassa HOM05D005491 ORTHO05D006973 7.4e-92 341.3 270 61.5
AUR62025582 Chenopodium quinoa HOM05D005491 ORTHO05D006973 9.7e-92 340.9 252 63.1
Lalb_Chr04g0264721 Lupinus albus HOM05D005491 ORTHO05D006973 9.7e-92 340.9 257 63.8
Ciclev10026115m.g Citrus clementina HOM05D005491 ORTHO05D006973 4.8e-91 338.6 261 61.3
Lsat_1_v5_gn_4_88641 Lactuca sativa HOM05D005491 ORTHO05D006973 4.8e-91 338.6 271 60.1
Psat7g263520 Pisum sativum HOM05D005491 ORTHO05D006973 4.8e-91 338.6 286 58.0
CiPaw.02G049600 Carya illinoinensis HOM05D005491 ORTHO05D006973 1.1e-90 337.4 245 65.7
Manes.16G045400 Manihot esculenta HOM05D005491 ORTHO05D006973 1.1e-90 337.4 264 61.7
FAN09G1743 Fragaria x ananassa HOM05D005491 ORTHO05D006973 1.4e-90 337.0 274 59.9
FAN14G5581 Fragaria x ananassa HOM05D005491 ORTHO05D005725 1.4e-90 337.0 263 61.6
Lj6A3G42 Lonicera japonica HOM05D005491 ORTHO05D006973 2.4e-90 336.3 259 62.5
Sed0002659 Sechium edule HOM05D005491 ORTHO05D006973 9.0e-90 334.3 261 62.1
EL10Ac7g18224 Beta vulgaris HOM05D005491 ORTHO05D006973 1.5e-89 333.6 279 58.4
Glyma.08G222600 Glycine max HOM05D005491 ORTHO05D006973 4.5e-89 332.0 254 64.6
Sed0027406 Sechium edule HOM05D005491 ORTHO05D006973 7.7e-89 331.3 253 62.5
Ca_20955_v3 Cicer arietinum L. HOM05D005491 ORTHO05D006973 1.7e-88 330.1 264 60.6
Cc04_g00370 Coffea canephora HOM05D005491 ORTHO05D006973 1.7e-88 330.1 275 61.8
arahy.Tifrunner.gnm1.ann1.5V72PU Arachis hypogaea HOM05D005491 ORTHO05D006973 2.2e-88 329.7 263 62.4
arahy.Tifrunner.gnm1.ann1.PDFG4L Arachis hypogaea HOM05D005491 ORTHO05D006973 1.1e-87 327.4 263 62.0
TPR.G38706 Trifolium pratense HOM05D005491 ORTHO05D006973 1.9e-87 326.6 261 60.2
DCAR_007669 Daucus carota HOM05D005491 ORTHO05D006973 3.2e-87 325.9 272 61.4
Medtr4g006200 Medicago truncatula HOM05D005491 ORTHO05D006973 3.2e-87 325.9 261 59.8
VMungo0647G0411 Vigna mungo HOM05D005491 ORTHO05D006973 7.2e-87 324.7 251 61.8
AL3G35200 Arabidopsis lyrata HOM05D005491 ORTHO05D006973 9.4e-87 324.3 267 61.0
Oeu023761.1 Olea europaea HOM05D005491 ORTHO05D006973 1.6e-86 323.6 241 64.3
SGA_v2.0_scaffold4G02103 Striga asiatica HOM05D005491 ORTHO05D006973 3.6e-86 322.4 253 63.2
AT3G21200 Arabidopsis thaliana HOM05D005491 ORTHO05D006973 6.1e-86 321.6 260 61.2
Carub.0003s2116 Capsella rubella HOM05D005491 ORTHO05D006973 1.0e-85 320.9 259 60.6
BcaC05g28263 Brassica carinata HOM05D005491 ORTHO05D006973 1.8e-85 320.1 253 61.7
C05p42580 Brassica napus HOM05D005491 ORTHO05D006973 1.8e-85 320.1 253 61.7
CARHR097080 Cardamine hirsuta HOM05D005491 ORTHO05D006973 1.8e-85 320.1 259 61.0
TWI18G1464 Tripterygium wilfordii HOM05D005491 ORTHO05D006973 1.8e-85 320.1 256 61.7
A05p27490 Brassica napus HOM05D005491 ORTHO05D006973 3.9e-85 318.9 253 62.1
BolC5t32978H Brassica oleracea HOM05D005491 ORTHO05D006973 3.9e-85 318.9 253 61.7
SalBow7G0632 Salvia bowleyana HOM05D005491 ORTHO05D006973 3.9e-85 318.9 253 63.6
Phvul.008G255600 Phaseolus vulgaris HOM05D005491 ORTHO05D006973 5.1e-85 318.5 251 60.2
Sp3g19180 Schrenkiella parvula HOM05D005491 ORTHO05D006973 5.1e-85 318.5 255 60.8
BraA05t21640Z Brassica rapa HOM05D005491 ORTHO05D006973 6.7e-85 318.2 253 62.1
Migut.D00894 Erythranthe guttata HOM05D005491 ORTHO05D006973 6.7e-85 318.2 252 61.5
A01p33690 Brassica napus HOM05D005491 ORTHO05D006973 1.1e-84 317.4 263 58.9
ClCG05G003150 Citrullus lanatus HOM05D005491 ORTHO05D006973 2.0e-84 316.6 274 57.7
C01p43060 Brassica napus HOM05D005491 ORTHO05D006973 2.5e-84 316.2 262 59.2
BolC1t04253H Brassica oleracea HOM05D005491 ORTHO05D006973 2.5e-84 316.2 262 59.2
BcaC09g49056 Brassica carinata HOM05D005491 ORTHO05D006973 4.3e-84 315.5 262 58.8
Aqoxy7G03200 Aquilegia oxysepala HOM05D005491 ORTHO05D006973 7.4e-84 314.7 252 61.1
BraA01t03481Z Brassica rapa HOM05D005491 ORTHO05D006973 1.3e-83 313.9 263 58.2
Aa31LG8G7890 Aethionema arabicum HOM05D005491 ORTHO05D006973 2.2e-83 313.2 254 59.4
BcaB06g26202 Brassica carinata HOM05D005491 ORTHO05D006973 3.7e-83 312.4 249 61.4
PSO063G4509 Papaver somniferum HOM05D005491 ORTHO05D006973 3.7e-83 312.4 284 55.6
Thhalv10021146m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 4.8e-83 312.0 252 60.3
Thhalv10021148m.g Eutrema salsugineum HOM05D005491 ORTHO05D006973 4.8e-83 312.0 252 60.3
PSO782G2961 Papaver somniferum HOM05D005491 ORTHO05D006973 1.8e-82 310.1 284 55.3
BcaB04g20605 Brassica carinata HOM05D005491 ORTHO05D006973 1.2e-81 307.4 253 59.7
HanXRQChr09g0277401 Helianthus annuus HOM05D005491 ORTHO05D006973 5.0e-80 302.0 253 60.5
THA.LOC104817926 Tarenaya hassleriana HOM05D005491 ORTHO05D006973 6.5e-80 301.6 255 58.8
Gohir.A05G114100 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.4e-79 300.4 261 57.9
CDE02G1684 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 2.5e-79 299.7 250 57.6
AUR62001366 Chenopodium quinoa HOM05D004422 ORTHO05D007331 7.2e-79 298.1 222 62.6
BcaNung05297 Brassica carinata HOM05D005491 ORTHO05D006973 2.6e-76 289.7 256 56.6
Actinidia31136 Actinidia chinensis HOM05D005491 ORTHO05D006973 6.3e-75 285.0 210 63.3
unitig_8.g3563 Utricularia gibba HOM05D006979 ORTHO05D008857 6.3e-75 285.0 252 55.6
MBI14_g30702_MAGBIO Magnolia biondii HOM05D005491 ORTHO05D006973 1.1e-74 284.3 337 44.5
Sabra10G0194700 Salix brachista HOM05D005491 ORTHO05D006973 1.2e-73 280.8 362 42.0
CDE05G1859 Ceratophyllum demersum HOM05D005491 ORTHO05D006973 1.5e-73 280.4 239 56.1
ATR0580G202 Amborella trichopoda HOM05D005491 ORTHO05D006973 3.9e-69 265.8 243 55.1
Zm00001eb319280 Zea mays HOM05D005491 ORTHO05D006973 2.0e-65 253.4 252 51.2
Haze_10760 Corylus avellana HOM05D005491 ORTHO05D006973 3.6e-62 242.7 158 68.4
COL.COLO4_31205 Corchorus olitorius HOM05D005491 ORTHO05D006973 6.1e-62 241.9 186 63.4
HPP92_013427 Vanilla planifolia HOM05D005491 ORTHO05D006973 3.5e-57 226.1 254 47.6
ECA232G0321 Erigeron canadensis HOM05D005491 ORTHO05D006973 7.7e-57 224.9 233 50.2
Pp3c7_5080 Physcomitrium patens HOM05D005491 ORTHO05D006973 4.7e-54 215.7 245 47.3
Mapoly0005s0279 Marchantia polymorpha HOM05D005491 ORTHO05D006973 8.0e-54 214.9 247 43.3
AagrBONN_evm.TU.Sc2ySwM_368.2001 Anthoceros agrestis HOM05D005491 ORTHO05D006973 4.0e-53 212.6 245 44.5
Zm00001eb170870 Zea mays HOM05D005491 ORTHO05D006973 9.8e-52 208.0 249 45.8
MSTRG.4527 Avicennia marina HOM05D005491 ORTHO05D006973 2.7e-49 199.9 130 69.2
Actinidia00637 Actinidia chinensis HOM05D005491 ORTHO05D006973 5.9e-49 198.7 196 51.5
SGA_v2.0_scaffold68G22804 Striga asiatica HOM05D005491 ORTHO05D006973 8.0e-38 161.8 191 47.1
arahy.Tifrunner.gnm1.ann1.S1MR2L Arachis hypogaea HOM05D005491 ORTHO05D006973 3.9e-32 142.9 91 70.3
SMO146G0309 Selaginella moellendorffii HOM05D005491 ORTHO05D006973 5.2e-29 132.5 145 44.1
Prupe.3G167000 Prunus persica HOM05D005491 ORTHO05D006973 4.4e-28 129.4 92 69.6
Potri.008G008801 Populus trichocarpa HOM05D005491 ORTHO05D006973 7.5e-28 128.6 99 62.6
Glyma.14G098400 Glycine max HOM05D005491 ORTHO05D006973 1.4e-26 124.4 106 52.8
Cfa005563 Carpinus fangiana HOM05D005491 ORTHO05D006973 9.2e-26 121.7 86 69.8
RcHm_v2.0_Chr3g0481151 Rosa chinensis HOM05D000090 ORTHO05D000083 9.2e-26 121.7 74 71.6
MD17G1145100 Malus domestica HOM05D005491 ORTHO05D006973 7.8e-25 118.6 129 50.4
Haze_10765 Corylus avellana HOM05D005491 ORTHO05D006973 6.6e-24 115.5 86 66.3
Cpa.g.c38087 Carica papaya HOM05D005491 ORTHO05D006973 1.9e-23 114.0 89 65.2
Medtr3g006055 Medicago truncatula HOM05D005491 ORTHO05D006973 1.1e-21 108.2 169 36.1
Cpa.g.c36201.2 Carica papaya HOM05D005491 ORTHO05D006973 2.3e-21 107.1 75 65.3
Pp3c11_26760 Physcomitrium patens HOM05D005491 ORTHO05D006973 6.8e-21 105.5 132 44.7
Medtr4g005800 Medicago truncatula HOM05D005491 ORTHO05D006973 1.2e-20 104.8 115 44.3
MCO13G019 Micromonas commoda HOM05D005491 ORTHO05D006973 2.6e-20 103.6 255 27.8
SEGI_08052 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 4.1e-18 96.3 105 42.9
Cre03.g156600 Chlamydomonas reinhardtii HOM05D005491 ORTHO05D006973 1.0e-16 91.7 244 27.9
Haze_10762 Corylus avellana HOM05D005491 ORTHO05D006973 6.6e-16 89.0 69 63.8
Gorai.002G157400 Gossypium raimondii HOM05D005491 ORTHO05D006973 8.1e-14 82.0 56 71.4
Gohir.D01G126833 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.1e-13 81.6 56 69.6
Gohir.D06G077900 Gossypium hirsutum HOM05D005491 ORTHO05D006973 1.8e-13 80.9 56 71.4
PRCOL_00005430 Prasinoderma coloniale HOM05D005491 ORTHO05D006973 2.4e-13 80.5 232 29.3
Sed0009892 Sechium edule HOM05D006013 ORTHO05D007383 4.0e-13 79.7 230 30.0
ClCG04G005340 Citrullus lanatus HOM05D006013 ORTHO05D007383 5.2e-13 79.3 230 28.7
Gorai.003G079200 Gossypium raimondii HOM05D005491 ORTHO05D006973 1.5e-12 77.8 56 66.1
MELO3C008805.2 Cucumis melo HOM05D006013 ORTHO05D007383 2.6e-12 77.0 230 28.7
CsaV3_4G013250 Cucumis sativus L. HOM05D006013 ORTHO05D007383 2.6e-12 77.0 230 28.7
Gorai.013G054800 Gossypium raimondii HOM05D005491 ORTHO05D006973 5.8e-12 75.9 56 66.1
SEGI_00240 Sequoiadendron giganteum HOM05D005491 ORTHO05D006973 5.8e-12 75.9 88 45.5
Gorai.012G122800 Gossypium raimondii HOM05D005491 ORTHO05D006973 7.6e-12 75.5 56 64.3
CANSAT78G0686 Cannabis sativa HOM05D006013 ORTHO05D007383 9.9e-12 75.1 238 29.4
vmacro09136 Vaccinium macrocarpon HOM05D006013 ORTHO05D007383 9.9e-12 75.1 241 29.0
Medtr7g085670 Medicago truncatula HOM05D006013 ORTHO05D007383 1.3e-11 74.7 239 28.0
MD14G1002900 Malus domestica HOM05D006013 ORTHO05D007383 6.4e-11 72.4 239 28.5
Aa31LG5G14470 Aethionema arabicum HOM05D006013 ORTHO05D007383 1.1e-10 71.6 258 27.9
BcaC05g29895 Brassica carinata HOM05D006013 ORTHO05D007383 1.1e-10 71.6 247 28.3
BolC5t34969H Brassica oleracea HOM05D006013 ORTHO05D007383 1.1e-10 71.6 247 28.3
CBR_g22384 Chara braunii HOM05D005491 ORTHO05D006973 1.1e-10 71.6 188 29.3
arahy.Tifrunner.gnm1.ann1.779YCA Arachis hypogaea HOM05D006013 ORTHO05D007383 1.9e-10 70.9 239 27.6
Phvul.001G111200 Phaseolus vulgaris HOM05D006013 ORTHO05D007383 1.9e-10 70.9 243 27.2
Prupe.7G004600 Prunus persica HOM05D006013 ORTHO05D007383 2.4e-10 70.5 232 29.3
VMungo1383G3468 Vigna mungo HOM05D006013 ORTHO05D007383 9.3e-10 68.6 243 26.7
Duzib177G0997 Durio zibethinus HOM05D006013 ORTHO05D007383 1.2e-09 68.2 242 28.5
Glyma.19G112500 Glycine max HOM05D006013 ORTHO05D007383 2.1e-09 67.4 243 26.7
RcHm_v2.0_Chr3g0497041 Rosa chinensis HOM05D006013 ORTHO05D007383 2.7e-09 67.0 232 28.4
FAN28G1937 Fragaria x ananassa HOM05D006013 ORTHO05D007383 3.5e-09 66.6 234 28.2
Aqoxy2G00451 Aquilegia oxysepala HOM05D006013 ORTHO05D007383 6.0e-09 65.9 239 28.0
HPP92_018481 Vanilla planifolia HOM05D006013 ORTHO05D007383 6.0e-09 65.9 239 29.3
FAN26G3022 Fragaria x ananassa HOM05D006013 ORTHO05D007383 1.0e-08 65.1 234 27.8
FvH4_1g28200 Fragaria vesca HOM05D006013 ORTHO05D007383 1.3e-08 64.7 234 27.4
MD12G1004200 Malus domestica HOM05D006013 ORTHO05D007383 5.1e-08 62.8 234 27.8
Nn6g35127 Nelumbo nucifera HOM05D005491 ORTHO05D006973 1.1e-07 61.6 47 63.8
QL07p018334 Quercus lobata HOM05D006013 ORTHO05D007383 5.6e-07 59.3 233 26.2


User provided reference genes

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