Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g123670.3 Solanum lycopersicum HOM05D008031 ORTHO05D010063 9.9e-97 356.7 169 100.0
Sopen03g041440 Solanum pennellii HOM05D008031 ORTHO05D010063 6.7e-93 344.0 169 96.4
PGSC0003DMG400009151 Solanum tuberosum HOM05D008031 ORTHO05D010063 2.0e-89 332.4 169 92.3
Peaxi162Scf00038g02327 Petunia axillaris HOM05D008031 ORTHO05D010063 1.8e-66 256.1 170 75.9
Nitab4.5_0006338g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 3.1e-66 255.4 170 72.9
Nitab4.5_0006966g0010 Nicotiana tabacum HOM05D008031 ORTHO05D010063 6.1e-62 241.1 170 70.0
Actinidia21841 Actinidia chinensis HOM05D008031 ORTHO05D010063 4.1e-34 148.7 172 51.7
Manes.04G151400 Manihot esculenta HOM05D008031 ORTHO05D010063 1.1e-31 140.6 169 46.7
Oeu019510.1 Olea europaea HOM05D008031 ORTHO05D010063 9.5e-31 137.5 168 46.4
Cc04_g00650 Coffea canephora HOM05D008031 ORTHO05D010063 1.2e-30 137.1 172 48.3
Atru.chr1.4165 Acer truncatum HOM05D008031 ORTHO05D010063 1.6e-30 136.7 169 46.7
CSS0025062 Camellia sinensis var. sinensis HOM05D001728 ORTHO05D004321 4.0e-29 132.1 168 48.2
TAR626G1534 Trochodendron aralioides HOM05D008031 ORTHO05D010063 4.0e-29 132.1 169 46.2
Actinidia24421 Actinidia chinensis HOM05D001728 ORTHO05D004321 6.8e-29 131.3 172 49.4
CiPaw.02G130600 Carya illinoinensis HOM05D008031 ORTHO05D010063 2.6e-28 129.4 170 45.3
Hma1.2p1_0090F.1_g045750 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 2.6e-28 129.4 169 46.7
Hma1.2p1_2628F.1_g325675 Hydrangea macrophylla HOM05D008031 ORTHO05D010063 2.6e-28 129.4 169 46.7
Thecc.06G130800 Theobroma cacao HOM05D008031 ORTHO05D010063 4.4e-28 128.6 169 42.0
Atru.chr1.4161 Acer truncatum HOM05D008031 ORTHO05D010063 1.7e-27 126.7 170 44.7
Oeu053417.1 Olea europaea HOM05D008031 ORTHO05D010063 1.7e-27 126.7 168 45.2
Rhsim08G0245200 Rhododendron simsii HOM05D008031 ORTHO05D010063 3.7e-27 125.6 170 46.5
Ciclev10027015m.g Citrus clementina HOM05D008031 ORTHO05D010063 1.1e-26 124.0 204 40.7
GSVIVG01016662001 Vitis vinifera HOM05D008031 ORTHO05D010063 4.1e-26 122.1 169 44.4
CiPaw.01G211000 Carya illinoinensis HOM05D008031 ORTHO05D010063 5.4e-26 121.7 169 42.6
CAN.G635.24 Capsicum annuum HOM05D008031 ORTHO05D010063 9.2e-26 120.9 169 42.0
Potri.001G162100 Populus trichocarpa HOM05D008031 ORTHO05D010063 1.6e-25 120.2 169 43.2
QL05p000882 Quercus lobata HOM05D008031 ORTHO05D010063 2.0e-25 119.8 169 46.7
QL05p001111 Quercus lobata HOM05D008031 ORTHO05D010063 2.0e-25 119.8 169 46.7
SGA_v2.0_scaffold71G23934 Striga asiatica HOM05D008031 ORTHO05D010063 2.7e-25 119.4 171 43.9
COL.COLO4_30875 Corchorus olitorius HOM05D008031 ORTHO05D010063 5.0e-24 115.2 169 39.1
PGR102G3014 Punica granatum HOM05D008031 ORTHO05D010063 6.6e-24 114.8 174 43.7
FvH4_6g35970 Fragaria vesca HOM05D008031 ORTHO05D010063 1.9e-23 113.2 167 41.3
FAN09G4453 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.9e-23 113.2 167 41.3
FAN14G4753 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.9e-23 113.2 167 41.3
RcHm_v2.0_Chr2g0148091 Rosa chinensis HOM05D008031 ORTHO05D010063 4.3e-23 112.1 171 42.1
Glyma.07G046300 Glycine max HOM05D008031 ORTHO05D010063 5.6e-23 111.7 170 42.4
MBI19_g32875_MAGBIO Magnolia biondii HOM05D008031 ORTHO05D010063 5.6e-23 111.7 173 43.9
Prupe.3G030600 Prunus persica HOM05D008031 ORTHO05D010063 7.3e-23 111.3 171 42.1
Haze_16140 Corylus avellana HOM05D001728 ORTHO05D004321 9.5e-23 110.9 169 43.2
Potri.003G073200 Populus trichocarpa HOM05D008031 ORTHO05D010063 9.5e-23 110.9 169 40.8
Lj3g0013752 Lotus japonicus HOM05D008031 ORTHO05D010063 2.8e-22 109.4 170 41.2
TWI14G1127 Tripterygium wilfordii HOM05D008031 ORTHO05D010063 2.8e-22 109.4 169 41.4
FAN02G3240 Fragaria x ananassa HOM05D008031 ORTHO05D010063 3.6e-22 109.0 171 41.5
Migut.I01137 Erythranthe guttata HOM05D008031 ORTHO05D010063 4.7e-22 108.6 178 45.5
FAN05G2192 Fragaria x ananassa HOM05D008031 ORTHO05D010063 1.1e-21 107.5 167 39.5
MD17G1154700 Malus domestica HOM05D008031 ORTHO05D010063 1.1e-21 107.5 152 46.1
Phvul.010G122700 Phaseolus vulgaris HOM05D008031 ORTHO05D010063 1.8e-21 106.7 175 41.1
Gohir.D10G051032 Gossypium hirsutum HOM05D001728 ORTHO05D004321 2.3e-21 106.3 169 38.5
Gorai.011G054900 Gossypium raimondii HOM05D001728 ORTHO05D004321 4.0e-21 105.5 169 38.5
Eucgr.J02592 Eucalyptus grandis HOM05D008031 ORTHO05D010063 5.2e-21 105.1 169 40.2
Gohir.A10G048037 Gossypium hirsutum HOM05D001728 ORTHO05D004321 1.5e-20 103.6 169 39.1
VMungo0331G1222 Vigna mungo HOM05D008031 ORTHO05D010063 3.4e-20 102.4 169 37.3
MD09G1172200 Malus domestica HOM05D008031 ORTHO05D010063 5.8e-20 101.7 152 42.8
Cfa003457 Carpinus fangiana HOM05D008031 ORTHO05D010063 1.3e-19 100.5 170 40.0
CANSAT56G3277 Cannabis sativa HOM05D008031 ORTHO05D010063 6.4e-19 98.2 167 35.3
CsaV3_3G031060 Cucumis sativus L. HOM05D008031 ORTHO05D010063 1.1e-18 97.4 151 42.4
Lalb_Chr10g0101091 Lupinus albus HOM05D008031 ORTHO05D010063 1.1e-18 97.4 167 40.7
Cpa.g.sc25.199 Carica papaya HOM05D008031 ORTHO05D010063 1.6e-17 93.6 170 38.8
Medtr8g023390 Medicago truncatula HOM05D008031 ORTHO05D010063 1.6e-17 93.6 160 43.1
Duzib235G0155 Durio zibethinus HOM05D008031 ORTHO05D010063 2.1e-17 93.2 142 41.5
Dinv20378 Davidia involucrata HOM05D001728 ORTHO05D004321 4.6e-17 92.0 113 50.4
MELO3C022708.2 Cucumis melo HOM05D008031 ORTHO05D010063 1.0e-16 90.9 151 41.1
Glyma.16G014500 Glycine max HOM05D008031 ORTHO05D010063 1.0e-16 90.9 169 35.5
TPR.G29474 Trifolium pratense HOM05D008031 ORTHO05D010063 1.0e-16 90.9 176 40.3
Hund18631 Selenicereus undatus HOM05D008031 ORTHO05D010063 1.3e-16 90.5 170 39.4
ClCG07G014260 Citrullus lanatus HOM05D008031 ORTHO05D010063 1.7e-16 90.1 169 39.6
DCAR_022641 Daucus carota HOM05D008031 ORTHO05D010063 1.7e-16 90.1 174 39.7
Aqoxy7G04192 Aquilegia oxysepala HOM05D008031 ORTHO05D010063 2.3e-16 89.7 175 38.3
Sed0024761 Sechium edule HOM05D008031 ORTHO05D010063 5.1e-16 88.6 169 38.5
arahy.Tifrunner.gnm1.ann1.8JA41T Arachis hypogaea HOM05D008031 ORTHO05D010063 1.2e-14 84.0 176 38.1
Ah.08g217400 Amaranthus hybridus HOM05D008031 ORTHO05D010063 2.1e-14 83.2 160 37.5
MSTRG.9544 Avicennia marina HOM05D008031 ORTHO05D010063 2.1e-14 83.2 148 39.9
arahy.Tifrunner.gnm1.ann1.PVL51W Arachis hypogaea HOM05D008031 ORTHO05D010063 1.4e-13 80.5 173 36.4
arahy.Tifrunner.gnm1.ann1.CKB8X1 Arachis hypogaea HOM05D008031 ORTHO05D010063 2.3e-13 79.7 177 37.9
Oeu015468.1 Olea europaea HOM05D008031 ORTHO05D010063 1.5e-12 77.0 162 35.8
Lsat_1_v5_gn_4_90600 Lactuca sativa HOM05D008031 ORTHO05D010063 2.0e-12 76.6 154 35.1
ATR0693G064 Amborella trichopoda HOM05D005099 ORTHO05D006087 2.6e-12 76.3 167 34.1
Eucgr.I02164 Eucalyptus grandis HOM05D008031 ORTHO05D010063 2.9e-11 72.8 157 38.2
Actinidia14282 Actinidia chinensis HOM05D005099 ORTHO05D006087 8.3e-11 71.2 179 30.7
SalBow6G0345 Salvia bowleyana HOM05D008031 ORTHO05D010063 8.3e-11 71.2 168 33.9
TAR362G0212 Trochodendron aralioides HOM05D005099 ORTHO05D006087 2.4e-10 69.7 188 33.0
Rhsim02G0007200 Rhododendron simsii HOM05D005099 ORTHO05D006087 1.6e-09 67.0 179 29.6
Manes.15G010800 Manihot esculenta HOM05D005099 ORTHO05D006087 2.7e-09 66.2 181 32.0
vmacro15214 Vaccinium macrocarpon HOM05D005099 ORTHO05D006087 4.6e-09 65.5 170 32.4
FvH4_4g18620 Fragaria vesca HOM05D005099 ORTHO05D006087 6.0e-09 65.1 189 29.6
FAN12G1484 Fragaria x ananassa HOM05D005099 ORTHO05D006087 6.0e-09 65.1 189 29.6
FAN12G1671 Fragaria x ananassa HOM05D005099 ORTHO05D006087 6.0e-09 65.1 189 29.6
Haze_01169 Corylus avellana HOM05D005099 ORTHO05D006087 7.8e-09 64.7 183 32.8
Cfa015424 Carpinus fangiana HOM05D005099 ORTHO05D006087 1.7e-08 63.5 187 33.7
Potri.008G219500 Populus trichocarpa HOM05D005099 ORTHO05D006087 3.9e-08 62.4 193 29.5
Sabra08G0151700 Salix brachista HOM05D005099 ORTHO05D006087 3.9e-08 62.4 191 30.4
PGSC0003DMG400023256 Solanum tuberosum HOM05D008031 ORTHO05D010063 3.9e-08 62.4 138 32.6
Duzib212G0134 Durio zibethinus HOM05D005099 ORTHO05D006087 5.1e-08 62.0 184 32.6
Ah.13g074810 Amaranthus hybridus HOM05D005099 ORTHO05D006087 1.1e-07 60.8 173 27.7
MBI18_g04556_MAGBIO Magnolia biondii HOM05D005099 ORTHO05D006087 1.1e-07 60.8 174 29.9
Nn3g21536 Nelumbo nucifera HOM05D005099 ORTHO05D006087 1.1e-07 60.8 187 31.0
Ciclev10006010m.g Citrus clementina HOM05D005099 ORTHO05D006087 1.5e-07 60.5 186 28.5
CiPaw.01G145600 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.3e-07 59.3 184 32.1
Duzib151G0929 Durio zibethinus HOM05D005099 ORTHO05D006087 7.3e-07 58.2 192 30.7
FAN07G0877 Fragaria x ananassa HOM05D005099 ORTHO05D006087 1.2e-06 57.4 193 29.5
QL06p010333 Quercus lobata HOM05D005099 ORTHO05D006087 1.6e-06 57.0 194 30.4
Thecc.04G288600 Theobroma cacao HOM05D005099 ORTHO05D006087 1.6e-06 57.0 190 30.5
Atru.chr4.2896 Acer truncatum HOM05D005099 ORTHO05D006087 2.1e-06 56.6 192 28.6
CSS0049831 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 2.1e-06 56.6 180 30.6
CSS0011820 Camellia sinensis var. sinensis HOM05D005099 ORTHO05D006087 3.6e-06 55.8 179 31.3
CiPaw.02G080200 Carya illinoinensis HOM05D005099 ORTHO05D006087 3.6e-06 55.8 187 29.4
Manes.03G198300 Manihot esculenta HOM05D005099 ORTHO05D006087 3.6e-06 55.8 179 27.9
CAN.G14.36 Capsicum annuum HOM05D005099 ORTHO05D006087 4.7e-06 55.5 190 26.8
Nitab4.5_0000695g0110 Nicotiana tabacum HOM05D005099 ORTHO05D006087 6.2e-06 55.1 191 31.4
THA.LOC104827334 Tarenaya hassleriana HOM05D005099 ORTHO05D006087 8.1e-06 54.7 195 29.7


User provided reference genes

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