Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g123580.4 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.9e-80 302.4 146 100.0
Sopen03g041350 Solanum pennellii HOM05D005200 ORTHO05D005760 6.4e-68 260.8 127 97.6
PGSC0003DMG400009175 Solanum tuberosum HOM05D005200 ORTHO05D005760 7.4e-56 220.7 124 91.1
Peaxi162Scf00038g02243 Petunia axillaris HOM05D005200 ORTHO05D005760 8.5e-36 154.1 127 66.1
Nitab4.5_0008798g0020 Nicotiana tabacum HOM05D005200 ORTHO05D005760 2.5e-32 142.5 128 61.7
SalBow6G5493 Salvia bowleyana HOM05D005200 ORTHO05D005760 1.8e-22 109.8 98 57.1
Solyc12g055700.3 Solanum lycopersicum HOM05D005200 ORTHO05D005760 1.0e-20 104.0 71 69.0
Migut.I01128 Erythranthe guttata HOM05D005200 ORTHO05D005760 1.3e-20 103.6 114 48.2
Sopen12g024150 Solanum pennellii HOM05D005200 ORTHO05D005760 1.3e-20 103.6 71 67.6
PGSC0003DMG402028848 Solanum tuberosum HOM05D005200 ORTHO05D005760 1.3e-20 103.6 92 56.5
MSTRG.10915 Avicennia marina HOM05D005200 ORTHO05D005760 2.2e-20 102.8 125 47.2
Oeu008400.1 Olea europaea HOM05D005200 ORTHO05D005760 1.9e-19 99.8 121 47.9
MSTRG.4536 Avicennia marina HOM05D005200 ORTHO05D005760 5.5e-19 98.2 83 57.8
Oeu015475.1 Olea europaea HOM05D005200 ORTHO05D005760 9.4e-19 97.4 74 66.2
SalBow7G2254 Salvia bowleyana HOM05D005200 ORTHO05D005760 9.4e-19 97.4 71 66.2
Dinv20386 Davidia involucrata HOM05D005200 ORTHO05D005760 8.8e-17 90.9 75 65.3
Duzib235G1369 Durio zibethinus HOM05D005200 ORTHO05D005760 1.7e-15 86.7 124 46.8
Dinv37821 Davidia involucrata HOM05D005200 ORTHO05D005760 2.2e-15 86.3 115 51.3
Cc04_g00760 Coffea canephora HOM05D005200 ORTHO05D005760 2.8e-15 85.9 117 41.0
Actinidia21832 Actinidia chinensis HOM05D005200 ORTHO05D005760 3.7e-15 85.5 121 49.6
Duzib160G0856 Durio zibethinus HOM05D005200 ORTHO05D005760 4.8e-15 85.1 130 42.3
COL.COLO4_30860 Corchorus olitorius HOM05D005200 ORTHO05D005760 8.2e-15 84.3 76 57.9
TPR.G18172 Trifolium pratense HOM05D005200 ORTHO05D005760 1.8e-14 83.2 116 42.2
RcHm_v2.0_Chr2g0147821 Rosa chinensis HOM05D005200 ORTHO05D005760 2.4e-14 82.8 134 38.1
Thecc.06G129700 Theobroma cacao HOM05D005200 ORTHO05D005760 2.4e-14 82.8 92 50.0
SGA_v2.0_scaffold71G23919 Striga asiatica HOM05D005200 ORTHO05D005760 5.3e-14 81.6 101 47.5
CANSAT56G3023 Cannabis sativa HOM05D005200 ORTHO05D005760 9.1e-14 80.9 75 52.0
Lsat_1_v5_gn_4_92221 Lactuca sativa HOM05D005200 ORTHO05D005760 1.2e-13 80.5 114 46.5
Ciclev10026732m.g Citrus clementina HOM05D005200 ORTHO05D005760 2.6e-13 79.3 83 50.6
CsaV3_7G033950 Cucumis sativus L. HOM05D005200 ORTHO05D005760 3.5e-13 79.0 79 48.1
MD17G1154100 Malus domestica HOM05D005200 ORTHO05D005760 4.5e-13 78.6 81 45.7
FvH4_6g35780 Fragaria vesca HOM05D005200 ORTHO05D005760 5.9e-13 78.2 78 47.4
FAN02G2923 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.9e-13 78.2 82 46.3
FAN09G2652 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.9e-13 78.2 78 47.4
FAN14G2768 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.9e-13 78.2 78 47.4
FAN14G3672 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.9e-13 78.2 82 46.3
HanXRQChr10g0311991 Helianthus annuus HOM05D005200 ORTHO05D005760 5.9e-13 78.2 64 57.8
Atru.chr1.4140 Acer truncatum HOM05D005200 ORTHO05D005760 1.0e-12 77.4 115 43.5
Actinidia26000 Actinidia chinensis HOM05D005200 ORTHO05D005760 1.0e-12 77.4 120 44.2
PSO135G0283 Papaver somniferum HOM05D005200 ORTHO05D005760 1.0e-12 77.4 103 43.7
TWI14G0574 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 1.0e-12 77.4 72 54.2
Glyma.16G013600 Glycine max HOM05D005200 ORTHO05D005760 1.7e-12 76.6 82 51.2
GSVIVG01016673001 Vitis vinifera HOM05D005200 ORTHO05D005760 2.2e-12 76.3 71 56.3
Actinidia31148 Actinidia chinensis HOM05D005200 ORTHO05D005760 2.9e-12 75.9 101 45.5
MELO3C024308.2 Cucumis melo HOM05D005200 ORTHO05D005760 2.9e-12 75.9 78 47.4
Gohir.A06G143500 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.9e-12 75.9 128 39.1
Gorai.011G055500 Gossypium raimondii HOM05D005200 ORTHO05D005760 2.9e-12 75.9 136 36.8
DCAR_007659 Daucus carota HOM05D005200 ORTHO05D005760 3.8e-12 75.5 71 49.3
ECA234G4728 Erigeron canadensis HOM05D005200 ORTHO05D005760 3.8e-12 75.5 54 59.3
Gohir.A10G047648 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.8e-12 75.5 136 36.0
HanXRQChr12g0360121 Helianthus annuus HOM05D005200 ORTHO05D005760 5.0e-12 75.1 64 56.2
Manes.11G013000 Manihot esculenta HOM05D005200 ORTHO05D005760 5.0e-12 75.1 71 59.2
Sed0021338 Sechium edule HOM05D005200 ORTHO05D005760 5.0e-12 75.1 82 47.6
Gorai.010G173300 Gossypium raimondii HOM05D005200 ORTHO05D005760 6.5e-12 74.7 128 38.3
MD09G1173200 Malus domestica HOM05D005200 ORTHO05D005760 6.5e-12 74.7 84 46.4
TWI23G1266 Tripterygium wilfordii HOM05D005200 ORTHO05D005760 6.5e-12 74.7 69 52.2
THA.LOC104822615 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 8.5e-12 74.3 58 60.3
ClCG09G001380 Citrullus lanatus HOM05D005200 ORTHO05D005760 1.1e-11 73.9 74 52.7
Rhsim08G0244400 Rhododendron simsii HOM05D005200 ORTHO05D005760 1.1e-11 73.9 84 46.4
THA.LOC104810392 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 1.5e-11 73.6 81 45.7
Gohir.D10G051950 Gossypium hirsutum HOM05D005200 ORTHO05D005760 1.9e-11 73.2 136 36.8
Potri.001G163100 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.9e-11 73.2 90 48.9
Lsat_1_v5_gn_5_137940 Lactuca sativa HOM05D005200 ORTHO05D005760 2.5e-11 72.8 64 56.2
Prupe.3G031300 Prunus persica HOM05D005200 ORTHO05D005760 2.5e-11 72.8 84 46.4
THA.LOC104815599 Tarenaya hassleriana HOM05D005200 ORTHO05D005760 2.5e-11 72.8 106 41.5
Lalb_Chr10g0101121 Lupinus albus HOM05D005200 ORTHO05D005760 4.2e-11 72.0 88 44.3
Sabra01G0129600 Salix brachista HOM05D005200 ORTHO05D005760 4.2e-11 72.0 69 55.1
arahy.Tifrunner.gnm1.ann1.56RDUW Arachis hypogaea HOM05D005200 ORTHO05D005760 5.5e-11 71.6 67 55.2
AUR62001409 Chenopodium quinoa HOM05D000001 ORTHO05D009753 5.5e-11 71.6 71 50.7
FAN05G3446 Fragaria x ananassa HOM05D005200 ORTHO05D005760 5.5e-11 71.6 82 45.1
Lj3g0024707 Lotus japonicus HOM05D005200 ORTHO05D005760 5.5e-11 71.6 79 43.0
Sabra03G0043200 Salix brachista HOM05D005200 ORTHO05D005760 5.5e-11 71.6 69 55.1
VMungo0331G0914 Vigna mungo HOM05D005200 ORTHO05D005760 5.5e-11 71.6 73 52.1
arahy.Tifrunner.gnm1.ann1.KXG0W2 Arachis hypogaea HOM05D005200 ORTHO05D005760 7.2e-11 71.2 67 55.2
Cfa003464 Carpinus fangiana HOM05D005200 ORTHO05D005760 7.2e-11 71.2 81 46.9
HanXRQChr09g0277231 Helianthus annuus HOM05D005200 ORTHO05D005760 1.2e-10 70.5 66 56.1
Manes.04G150600 Manihot esculenta HOM05D005200 ORTHO05D005760 1.2e-10 70.5 70 57.1
Medtr7g117550 Medicago truncatula HOM05D005200 ORTHO05D005760 1.2e-10 70.5 92 39.1
TAR626G1734 Trochodendron aralioides HOM05D005200 ORTHO05D005760 1.2e-10 70.5 81 50.6
Aa31LG8G1550 Aethionema arabicum HOM05D005200 ORTHO05D005760 1.6e-10 70.1 68 51.5
Gohir.A09G075600 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.1e-10 69.7 87 43.7
Haze_16132 Corylus avellana HOM05D005200 ORTHO05D005760 2.7e-10 69.3 67 55.2
AUR62025618 Chenopodium quinoa HOM05D000001 ORTHO05D009753 3.6e-10 68.9 71 49.3
Gohir.D09G075300 Gossypium hirsutum HOM05D005200 ORTHO05D005760 3.6e-10 68.9 90 41.1
Gorai.006G090400 Gossypium raimondii HOM05D005200 ORTHO05D005760 3.6e-10 68.9 90 41.1
vmacro15084 Vaccinium macrocarpon HOM05D005200 ORTHO05D005760 3.6e-10 68.9 111 45.9
A05p35100 Brassica napus HOM05D005200 ORTHO05D005760 6.1e-10 68.2 97 39.2
Lalb_Chr04g0261221 Lupinus albus HOM05D005200 ORTHO05D005760 6.1e-10 68.2 65 50.8
AL3G26600 Arabidopsis lyrata HOM05D005200 ORTHO05D005760 8.0e-10 67.8 70 47.1
CiPaw.01G211800 Carya illinoinensis HOM05D005200 ORTHO05D005760 8.0e-10 67.8 52 57.7
AT3G14280 Arabidopsis thaliana HOM05D005200 ORTHO05D005760 1.0e-09 67.4 70 48.6
BraA05t22323Z Brassica rapa HOM05D005200 ORTHO05D005760 1.0e-09 67.4 97 38.1
Phvul.010G123400 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 1.0e-09 67.4 71 52.1
Potri.003G072400 Populus trichocarpa HOM05D005200 ORTHO05D005760 1.0e-09 67.4 56 57.1
Aqoxy7G04178 Aquilegia oxysepala HOM05D005200 ORTHO05D005760 1.4e-09 67.0 85 42.4
CARHR089210 Cardamine hirsuta HOM05D005200 ORTHO05D005760 1.8e-09 66.6 60 51.7
Cpa.g.sc25.187 Carica papaya HOM05D005200 ORTHO05D005760 1.8e-09 66.6 53 56.6
CiPaw.02G131300 Carya illinoinensis HOM05D005200 ORTHO05D005760 1.8e-09 66.6 67 50.7
Eucgr.I02161 Eucalyptus grandis HOM05D005200 ORTHO05D005760 1.8e-09 66.6 65 50.8
Carub.0003s1397 Capsella rubella HOM05D005200 ORTHO05D005760 2.3e-09 66.2 60 51.7
Gohir.D06G148800 Gossypium hirsutum HOM05D005200 ORTHO05D005760 2.3e-09 66.2 103 40.8
QL05p001275 Quercus lobata HOM05D005200 ORTHO05D005760 3.0e-09 65.9 55 58.2
Lj1g0005720 Lotus japonicus HOM05D005200 ORTHO05D005760 5.2e-09 65.1 83 41.0
PGR119G0182 Punica granatum HOM05D005200 ORTHO05D005760 5.2e-09 65.1 92 42.4
Thhalv10021716m.g Eutrema salsugineum HOM05D005200 ORTHO05D005760 6.7e-09 64.7 60 50.0
Glyma.19G262400 Glycine max HOM05D005200 ORTHO05D005760 8.8e-09 64.3 77 44.2
Sp3g12570 Schrenkiella parvula HOM05D005200 ORTHO05D005760 8.8e-09 64.3 59 52.5
BcaB04g18835 Brassica carinata HOM05D005200 ORTHO05D005760 1.2e-08 63.9 58 51.7
BcaB06g25397 Brassica carinata HOM05D005200 ORTHO05D005760 1.2e-08 63.9 94 39.4
BcaC05g29096 Brassica carinata HOM05D005200 ORTHO05D005760 1.2e-08 63.9 58 53.4
C05p53060 Brassica napus HOM05D005200 ORTHO05D005760 1.2e-08 63.9 58 53.4
BolC5t33987H Brassica oleracea HOM05D005200 ORTHO05D005760 1.2e-08 63.9 58 53.4
VMungo1309G1714 Vigna mungo HOM05D005200 ORTHO05D005760 1.2e-08 63.9 95 40.0
ATR0099G034 Amborella trichopoda HOM05D005200 ORTHO05D005760 2.0e-08 63.2 57 45.6
Lalb_Chr15g0076711 Lupinus albus HOM05D005200 ORTHO05D005760 2.6e-08 62.8 91 40.7
Nn6g35724 Nelumbo nucifera HOM05D005200 ORTHO05D005760 2.6e-08 62.8 45 64.4
BcaC09g48397 Brassica carinata HOM05D005200 ORTHO05D005760 5.7e-08 61.6 60 45.0
Zm00001eb278460 Zea mays HOM05D005200 ORTHO05D005760 5.7e-08 61.6 49 53.1
A01p39430 Brassica napus HOM05D005200 ORTHO05D005760 9.7e-08 60.8 60 48.3
C01p50260 Brassica napus HOM05D005200 ORTHO05D005760 9.7e-08 60.8 55 47.3
BolC1t04981H Brassica oleracea HOM05D005200 ORTHO05D005760 9.7e-08 60.8 55 47.3
BraA01t03983Z Brassica rapa HOM05D005200 ORTHO05D005760 9.7e-08 60.8 60 48.3
arahy.Tifrunner.gnm1.ann1.7PP1M3 Arachis hypogaea HOM05D005200 ORTHO05D005760 1.3e-07 60.5 84 39.3
MBI19_g32869_MAGBIO Magnolia biondii HOM05D005200 ORTHO05D005760 1.3e-07 60.5 31 74.2
HPP92_005865 Vanilla planifolia HOM05D005200 ORTHO05D005760 1.3e-07 60.5 60 43.3
Glyma.03G263400 Glycine max HOM05D005200 ORTHO05D005760 2.2e-07 59.7 77 42.9
Os06g0193300 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 3.7e-07 58.9 42 57.1
Phvul.009G261901 Phaseolus vulgaris HOM05D005200 ORTHO05D005760 3.7e-07 58.9 59 52.5
arahy.Tifrunner.gnm1.ann1.F1PVR5 Arachis hypogaea HOM05D005200 ORTHO05D005760 6.3e-07 58.2 54 50.0
ClCG07G014310 Citrullus lanatus HOM05D005200 ORTHO05D005760 8.2e-07 57.8 74 47.3
Glyma.07G045700 Glycine max HOM05D005200 ORTHO05D005760 1.8e-06 56.6 81 40.7
Medtr8g023100 Medicago truncatula HOM05D005200 ORTHO05D005760 2.4e-06 56.2 116 31.9
Pp3c19_6810 Physcomitrium patens HOM05D023101 ORTHO05D005760 2.4e-06 56.2 76 38.2
Ah.08g217360 Amaranthus hybridus HOM05D005200 ORTHO05D005760 3.1e-06 55.8 44 63.6
CsaV3_3G030990 Cucumis sativus L. HOM05D005200 ORTHO05D005760 3.1e-06 55.8 42 57.1
Os10g0390701 Oryza sativa ssp. japonica HOM05D005200 ORTHO05D005760 5.3e-06 55.1 39 61.5
Pp3c15_15470 Physcomitrium patens HOM05D023101 ORTHO05D005760 7.0e-06 54.7 31 67.7
Psat4g165560 Pisum sativum HOM05D005200 ORTHO05D005760 7.0e-06 54.7 49 53.1


User provided reference genes

Program Settings