Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g121530.3 Solanum lycopersicum HOM05D005904 ORTHO05D007074 1.2e-127 459.9 237 100.0
Nitab4.5_0001295g0010 Nicotiana tabacum HOM05D005904 ORTHO05D007074 4.9e-102 374.8 234 82.9
CAN.G1389.13 Capsicum annuum HOM05D005904 ORTHO05D007074 1.5e-95 353.2 224 83.5
PGSC0003DMG400002591 Solanum tuberosum HOM05D005904 ORTHO05D007074 1.4e-93 346.7 233 81.5
HanXRQChr10g0310911 Helianthus annuus HOM05D005904 ORTHO05D007074 5.9e-79 298.1 222 70.3
Lsat_1_v5_gn_5_134821 Lactuca sativa HOM05D005904 ORTHO05D007074 1.3e-78 297.0 217 70.5
Cc07_g04610 Coffea canephora HOM05D005904 ORTHO05D007074 5.0e-78 295.0 227 68.7
MSTRG.22589 Avicennia marina HOM05D005904 ORTHO05D007074 1.1e-77 293.9 234 64.5
ECA234G0674 Erigeron canadensis HOM05D005904 ORTHO05D007074 4.7e-76 288.5 216 70.4
Migut.O00807 Erythranthe guttata HOM05D005904 ORTHO05D007074 8.0e-76 287.7 225 67.6
Peaxi162Scf00038g01518 Petunia axillaris HOM05D005904 ORTHO05D007074 8.0e-76 287.7 155 91.0
CSS0014810 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 1.4e-75 287.0 226 65.5
Dinv30384 Davidia involucrata HOM05D005904 ORTHO05D007074 1.4e-75 287.0 236 64.8
GSVIVG01016848001 Vitis vinifera HOM05D005904 ORTHO05D007074 8.8e-75 284.3 212 68.4
Cpa.g.sc25.58 Carica papaya HOM05D005904 ORTHO05D007074 1.3e-73 280.4 230 62.6
QL05p012810 Quercus lobata HOM05D005904 ORTHO05D007074 1.7e-73 280.0 226 65.9
CiPaw.02G140600 Carya illinoinensis HOM05D005904 ORTHO05D007074 2.8e-73 279.3 218 67.4
Sabra01G0156900 Salix brachista HOM05D005904 ORTHO05D007074 4.1e-72 275.4 224 67.0
SalBow6G4349 Salvia bowleyana HOM05D005904 ORTHO05D007074 5.3e-72 275.0 253 60.9
CsaV3_3G043900 Cucumis sativus L. HOM05D005904 ORTHO05D007074 4.5e-71 271.9 228 64.0
Actinidia21754 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.3e-70 270.4 210 65.7
ClCG07G013710 Citrullus lanatus HOM05D005904 ORTHO05D007074 2.9e-70 269.2 228 64.0
Medtr2g100220 Medicago truncatula HOM05D005904 ORTHO05D007074 3.8e-70 268.9 227 65.2
Thecc.06G110900 Theobroma cacao HOM05D005904 ORTHO05D007074 1.1e-69 267.3 238 60.5
Glyma.15G023700 Glycine max HOM05D005904 ORTHO05D007074 1.5e-69 266.9 227 63.4
Rhsim08G0232900 Rhododendron simsii HOM05D005904 ORTHO05D007074 1.9e-69 266.5 218 64.7
Lj5A45T77 Lonicera japonica HOM05D005904 ORTHO05D007074 2.5e-69 266.2 229 61.6
arahy.Tifrunner.gnm1.ann1.LV1MMJ Arachis hypogaea HOM05D005904 ORTHO05D007074 3.2e-69 265.8 222 64.0
Duzib235G0974 Durio zibethinus HOM05D005904 ORTHO05D007074 3.2e-69 265.8 222 62.2
CANSAT56G1468 Cannabis sativa HOM05D005904 ORTHO05D007074 5.5e-69 265.0 225 62.2
THA.LOC104810344 Tarenaya hassleriana HOM05D005904 ORTHO05D007074 5.5e-69 265.0 234 63.2
Phvul.005G160100 Phaseolus vulgaris HOM05D005904 ORTHO05D007074 7.2e-69 264.6 230 63.5
VMungo1080G0888 Vigna mungo HOM05D005904 ORTHO05D007074 7.2e-69 264.6 227 62.6
Gorai.011G065700 Gossypium raimondii HOM05D005904 ORTHO05D007074 9.4e-69 264.2 222 62.6
DCAR_016164 Daucus carota HOM05D001529 ORTHO05D003309 1.6e-68 263.5 257 55.6
Manes.04G139100 Manihot esculenta HOM05D005904 ORTHO05D007074 1.6e-68 263.5 222 64.4
Nitab4.5_0007429g0020 Nicotiana tabacum HOM05D005904 ORTHO05D007074 1.6e-68 263.5 164 82.3
Lj9A518G85 Lonicera japonica HOM05D005904 ORTHO05D007074 2.1e-68 263.1 223 63.2
Psat5g293640 Pisum sativum HOM05D005904 ORTHO05D007074 2.7e-68 262.7 223 64.1
Potri.001G200300 Populus trichocarpa HOM05D005904 ORTHO05D007074 3.6e-68 262.3 226 65.0
MELO3C013052.2 Cucumis melo HOM05D005904 ORTHO05D007074 6.1e-68 261.5 228 62.7
Gohir.D10G061500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 6.1e-68 261.5 226 61.9
Gohir.A10G060500 Gossypium hirsutum HOM05D005904 ORTHO05D007074 8.0e-68 261.2 233 60.1
A05p35680 Brassica napus HOM05D005904 ORTHO05D007074 1.0e-67 260.8 222 61.7
BraA05t22375Z Brassica rapa HOM05D005904 ORTHO05D007074 1.0e-67 260.8 222 61.7
arahy.Tifrunner.gnm1.ann1.21ET8L Arachis hypogaea HOM05D005904 ORTHO05D007074 2.3e-67 259.6 224 62.9
Sp3g11940 Schrenkiella parvula HOM05D005904 ORTHO05D007074 6.8e-67 258.1 223 61.0
Nn6g35465 Nelumbo nucifera HOM05D005904 ORTHO05D007074 8.8e-67 257.7 225 61.3
AL3G25790 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 1.2e-66 257.3 221 60.2
Carub.0003s1326 Capsella rubella HOM05D005904 ORTHO05D007074 2.0e-66 256.5 221 60.6
MD09G1194100 Malus domestica HOM05D005904 ORTHO05D007074 2.6e-66 256.1 238 59.7
Aa31LG10G930 Aethionema arabicum HOM05D005904 ORTHO05D007074 3.4e-66 255.8 228 60.5
Sed0023540 Sechium edule HOM05D005904 ORTHO05D007074 3.4e-66 255.8 233 60.5
TWI31G1228 Tripterygium wilfordii HOM05D005904 ORTHO05D007074 3.4e-66 255.8 228 61.8
Thhalv10021279m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 5.7e-66 255.0 223 61.4
PGR044G1952 Punica granatum HOM05D005904 ORTHO05D007074 5.7e-66 255.0 223 61.0
BolC5t34074H Brassica oleracea HOM05D005904 ORTHO05D007074 7.5e-66 254.6 226 61.1
Eucgr.F03129 Eucalyptus grandis HOM05D005904 ORTHO05D007074 7.5e-66 254.6 223 61.4
FAN07G2466 Fragaria x ananassa HOM05D005904 ORTHO05D007074 1.3e-65 253.8 245 58.4
DCAR_022713 Daucus carota HOM05D005904 ORTHO05D007074 1.7e-65 253.4 224 62.5
FvH4_4g12940 Fragaria vesca HOM05D005904 ORTHO05D007074 2.2e-65 253.1 245 58.4
RcHm_v2.0_Chr6g0267021 Rosa chinensis HOM05D005904 ORTHO05D007074 2.8e-65 252.7 232 60.8
BcaNung06385 Brassica carinata HOM05D005904 ORTHO05D007074 3.7e-65 252.3 224 60.3
C05p54090 Brassica napus HOM05D005904 ORTHO05D007074 3.7e-65 252.3 224 60.3
Thhalv10011744m.g Eutrema salsugineum HOM05D005904 ORTHO05D007074 3.7e-65 252.3 224 58.9
BcaB06g25441 Brassica carinata HOM05D005904 ORTHO05D007074 1.1e-64 250.8 224 59.8
Prupe.3G050600 Prunus persica HOM05D005904 ORTHO05D007074 1.1e-64 250.8 232 60.3
Hund18723 Selenicereus undatus HOM05D005904 ORTHO05D007074 1.4e-64 250.4 227 59.5
AT3G13740 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 1.8e-64 250.0 221 58.8
CDE06G0040 Ceratophyllum demersum HOM05D005904 ORTHO05D007074 4.1e-64 248.8 178 66.3
Lj3g0018823 Lotus japonicus HOM05D005904 ORTHO05D007074 5.3e-64 248.4 221 62.0
Sc12g0010220 Simmondsia chinensis HOM05D005904 ORTHO05D007074 5.3e-64 248.4 228 61.8
Carub.0001s4364 Capsella rubella HOM05D005904 ORTHO05D007074 7.0e-64 248.1 219 60.7
Oeu039966.1 Olea europaea HOM05D005904 ORTHO05D007074 7.0e-64 248.1 143 83.2
TAR626G1971 Trochodendron aralioides HOM05D005904 ORTHO05D007074 7.0e-64 248.1 230 57.4
AL1G63140 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 9.1e-64 247.7 218 61.0
TAR383G0617 Trochodendron aralioides HOM05D005904 ORTHO05D007074 1.2e-63 247.3 229 58.1
Aa31LG8G920 Aethionema arabicum HOM05D005904 ORTHO05D007074 3.5e-63 245.7 223 59.2
Ah.08g216180 Amaranthus hybridus HOM05D005904 ORTHO05D007074 4.5e-63 245.4 239 57.7
AT1G55140 Arabidopsis thaliana HOM05D005904 ORTHO05D007074 4.5e-63 245.4 212 62.3
Sp1g40800 Schrenkiella parvula HOM05D005904 ORTHO05D007074 7.7e-63 244.6 229 59.0
A08p00940 Brassica napus HOM05D005904 ORTHO05D007074 2.9e-62 242.7 220 59.1
CARHR044740 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.1e-61 240.7 217 60.8
PSO210G1067 Papaver somniferum HOM05D005904 ORTHO05D007074 1.9e-61 240.0 229 57.2
SGA_v2.0_scaffold45G16976 Striga asiatica HOM05D005904 ORTHO05D007074 1.9e-61 240.0 213 62.4
FAN12G1666 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.2e-61 239.2 273 52.4
C03p92270 Brassica napus HOM05D005904 ORTHO05D007074 5.5e-61 238.4 217 58.5
BraA08t32149Z Brassica rapa HOM05D005904 ORTHO05D007074 9.4e-61 237.7 220 58.2
AUR62038130 Chenopodium quinoa HOM05D005904 ORTHO05D007074 2.7e-60 236.1 221 57.9
BcaC01g01466 Brassica carinata HOM05D005904 ORTHO05D007074 8.0e-60 234.6 217 58.1
BolC3t21541H Brassica oleracea HOM05D005904 ORTHO05D007074 8.0e-60 234.6 217 58.1
PSO210G2600 Papaver somniferum HOM05D005904 ORTHO05D007074 1.4e-59 233.8 208 58.7
Aqoxy7G04049 Aquilegia oxysepala HOM05D005904 ORTHO05D007074 2.3e-59 233.0 197 60.9
AUR62009818 Chenopodium quinoa HOM05D005904 ORTHO05D007074 4.0e-59 232.3 221 57.0
EL10Ac7g15769 Beta vulgaris HOM05D005904 ORTHO05D007074 3.4e-58 229.2 162 67.9
Lalb_Chr24g0396341 Lupinus albus HOM05D005904 ORTHO05D007074 3.4e-58 229.2 231 56.7
vmacro18789 Vaccinium macrocarpon HOM05D005904 ORTHO05D007074 3.7e-57 225.7 229 56.3
HPP92_003969 Vanilla planifolia HOM05D005904 ORTHO05D007074 4.8e-57 225.3 225 53.8
BcaB04g16991 Brassica carinata HOM05D005904 ORTHO05D007074 4.1e-56 222.2 218 58.3
COL.COLO4_30653 Corchorus olitorius HOM05D005904 ORTHO05D007074 1.6e-55 220.3 205 56.6
Atru.chr1.3688 Acer truncatum HOM05D005904 ORTHO05D007074 3.5e-55 219.2 219 56.2
Zm00001eb120860 Zea mays HOM05D005904 ORTHO05D007074 1.7e-54 216.9 171 61.4
Ciclev10026243m.g Citrus clementina HOM05D005904 ORTHO05D007074 3.8e-54 215.7 211 57.8
Os11g0237700 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 3.8e-54 215.7 171 59.6
Os05g0318300 Oryza sativa ssp. japonica HOM05D005904 ORTHO05D007074 5.0e-54 215.3 171 59.6
MBI01_g01270_MAGBIO Magnolia biondii HOM05D005904 ORTHO05D007074 4.2e-53 212.2 143 72.0
unitig_0.g2872 Utricularia gibba HOM05D005904 ORTHO05D007074 2.1e-52 209.9 136 71.3
Sopen03g040340 Solanum pennellii HOM05D005904 ORTHO05D007074 3.2e-48 196.1 101 100.0
Mapoly0003s0025 Marchantia polymorpha HOM05D005904 ORTHO05D007074 2.0e-47 193.4 185 53.5
Nn8g38876 Nelumbo nucifera HOM05D005904 ORTHO05D007074 2.9e-46 189.5 144 63.2
AagrBONN_evm.TU.Sc2ySwM_344.3620 Anthoceros agrestis HOM05D005904 ORTHO05D007074 2.8e-44 183.0 146 63.0
Pp3c14_13400 Physcomitrium patens HOM05D005904 ORTHO05D007074 1.8e-43 180.3 159 54.7
ATR0661G556 Amborella trichopoda HOM05D005904 ORTHO05D007074 2.0e-42 176.8 148 60.1
AL180U10010 Arabidopsis lyrata HOM05D005904 ORTHO05D007074 2.9e-41 172.9 159 56.6
SEGI_12033 Sequoiadendron giganteum HOM05D005904 ORTHO05D007074 8.3e-41 171.4 111 72.1
Haze_15945 Corylus avellana HOM05D005904 ORTHO05D007074 4.6e-39 165.6 160 58.8
Actinidia32143 Actinidia chinensis HOM05D005904 ORTHO05D007074 1.0e-38 164.5 168 52.4
CBR_g18726 Chara braunii HOM05D005904 ORTHO05D007074 5.6e-37 158.7 132 54.5
SMO134G0002 Selaginella moellendorffii HOM05D005904 ORTHO05D007074 5.6e-37 158.7 139 54.0
CARHR088470 Cardamine hirsuta HOM05D005904 ORTHO05D007074 1.4e-35 154.1 138 58.7
FAN17G1021 Fragaria x ananassa HOM05D005904 ORTHO05D007074 3.9e-30 136.0 89 74.2
Ca_01193_v3 Cicer arietinum L. HOM05D005904 ORTHO05D007074 3.6e-28 129.4 72 80.6
Atru.chr1.3683 Acer truncatum HOM05D005904 ORTHO05D007074 1.4e-24 117.5 117 59.0
PGR044G2333 Punica granatum HOM05D005904 ORTHO05D007074 6.2e-20 102.1 53 81.1
CSS0024966 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 2.6e-18 96.7 117 47.9
TPR.G6604 Trifolium pratense HOM05D005904 ORTHO05D007074 5.8e-18 95.5 72 65.3
Potri.003G038400 Populus trichocarpa HOM05D005904 ORTHO05D007074 7.6e-18 95.1 100 53.0
MCO11G030 Micromonas commoda HOM05D005904 ORTHO05D007074 1.3e-17 94.4 132 38.6
CSS0026651 Camellia sinensis var. sinensis HOM05D005904 ORTHO05D007074 8.4e-17 91.7 48 87.5
SGA_v2.0_scaffold71G23779 Striga asiatica HOM05D005904 ORTHO05D007074 3.1e-11 73.2 220 30.0
MCO01G154 Micromonas commoda HOM05D005904 ORTHO05D268674 1.7e-09 67.4 154 28.6
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 7.1e-08 62.0 36 75.0


User provided reference genes

Program Settings