Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g121350.3 Solanum lycopersicum HOM05D005721 ORTHO05D006758 0.0e+00 1442.9 719 100.0
Sopen03g040160 Solanum pennellii HOM05D005721 ORTHO05D006758 0.0e+00 1330.5 667 99.3
CAN.G1668.6 Capsicum annuum HOM05D005721 ORTHO05D006758 0.0e+00 1249.2 741 86.8
Nitab4.5_0004848g0040 Nicotiana tabacum HOM05D005721 ORTHO05D006758 0.0e+00 1219.1 671 91.4
Nitab4.5_0006071g0030 Nicotiana tabacum HOM05D005721 ORTHO05D006758 0.0e+00 1161.4 670 89.0
Peaxi162Scf00038g01247 Petunia axillaris HOM05D005721 ORTHO05D006758 0.0e+00 1106.7 661 85.0
CSS0018154 Camellia sinensis var. sinensis HOM05D005721 ORTHO05D006758 1.6e-281 972.6 649 75.0
Hma1.2p1_0388F.1_g142110 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 4.7e-281 971.1 660 73.8
TAR383G0756 Trochodendron aralioides HOM05D005721 ORTHO05D006758 9.9e-279 963.4 650 74.6
Actinidia21738 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.6e-276 956.1 648 73.8
Dinv37937 Davidia involucrata HOM05D005721 ORTHO05D006758 2.1e-276 955.7 660 73.6
Haze_15914 Corylus avellana HOM05D005721 ORTHO05D006758 3.5e-276 954.9 652 73.0
vmacro18826 Vaccinium macrocarpon HOM05D005721 ORTHO05D006758 3.0e-275 951.8 654 72.8
GSVIVG01016897001 Vitis vinifera HOM05D005721 ORTHO05D006758 1.2e-273 946.4 651 72.8
Cc04_g02230 Coffea canephora HOM05D005721 ORTHO05D006758 1.5e-271 939.5 672 71.3
Duzib235G0012 Durio zibethinus HOM05D005721 ORTHO05D006758 4.6e-268 927.9 647 72.3
Gorai.011G068100 Gossypium raimondii HOM05D005721 ORTHO05D006758 1.3e-267 926.4 652 71.0
Gohir.A10G062400 Gossypium hirsutum HOM05D005721 ORTHO05D006758 6.6e-267 924.1 652 70.6
Thecc.06G106800 Theobroma cacao HOM05D005721 ORTHO05D006758 2.5e-266 922.2 646 72.8
Dinv30404 Davidia involucrata HOM05D005721 ORTHO05D006758 9.6e-266 920.2 628 73.2
MD17G1178100 Malus domestica HOM05D005721 ORTHO05D006758 1.6e-265 919.5 666 70.3
Prupe.3G053200 Prunus persica HOM05D005721 ORTHO05D006758 2.1e-265 919.1 677 69.3
Aqoxy7G03983 Aquilegia oxysepala HOM05D005721 ORTHO05D006758 4.8e-265 917.9 657 70.0
QL05p015721 Quercus lobata HOM05D005721 ORTHO05D006758 4.8e-265 917.9 647 70.8
CANSAT56G2950 Cannabis sativa HOM05D005721 ORTHO05D006758 1.4e-264 916.4 650 70.6
Atru.chr1.3621 Acer truncatum HOM05D005721 ORTHO05D006758 1.8e-264 916.0 666 69.8
ECA232G2751 Erigeron canadensis HOM05D005721 ORTHO05D006758 3.4e-263 911.8 650 70.2
QL05p015579 Quercus lobata HOM05D005721 ORTHO05D006758 4.5e-263 911.4 647 70.3
Lsat_1_v5_gn_4_96061 Lactuca sativa HOM05D005721 ORTHO05D006758 7.6e-263 910.6 644 71.6
Migut.I00999 Erythranthe guttata HOM05D005721 ORTHO05D006758 9.9e-263 910.2 678 68.4
RcHm_v2.0_Chr2g0142311 Rosa chinensis HOM05D005721 ORTHO05D006758 1.3e-262 909.8 667 68.4
CiPaw.01G227700 Carya illinoinensis HOM05D005721 ORTHO05D006758 1.7e-262 909.4 651 69.6
MD09G1196700 Malus domestica HOM05D005721 ORTHO05D006758 2.2e-262 909.1 676 68.8
Duzib192G0301 Durio zibethinus HOM05D005721 ORTHO05D006758 6.7e-259 897.5 647 70.3
FvH4_6g32880 Fragaria vesca HOM05D005721 ORTHO05D006758 4.3e-258 894.8 653 68.6
PSO210G3246 Papaver somniferum HOM05D005721 ORTHO05D006758 4.3e-258 894.8 661 67.2
Nn6g35400 Nelumbo nucifera HOM05D005721 ORTHO05D006758 1.3e-257 893.3 646 70.1
FAN02G2457 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.1e-257 892.5 651 69.0
Ciclev10025098m.g Citrus clementina HOM05D005721 ORTHO05D006758 6.2e-257 891.0 659 69.0
SGA_v2.0_scaffold71G23752 Striga asiatica HOM05D005721 ORTHO05D006758 6.2e-257 891.0 671 67.4
Eucgr.F03100 Eucalyptus grandis HOM05D005721 ORTHO05D006758 1.1e-256 890.2 655 68.1
PSO210G5250 Papaver somniferum HOM05D005721 ORTHO05D006758 2.4e-256 889.0 651 67.6
Glyma.08G196700 Glycine max HOM05D005721 ORTHO05D006758 4.0e-256 888.3 647 69.1
Medtr8g015550 Medicago truncatula HOM05D005721 ORTHO05D006758 4.0e-256 888.3 647 67.5
Lj3g0007444 Lotus japonicus HOM05D005721 ORTHO05D006758 2.0e-255 885.9 660 67.9
Lalb_Chr01g0013341 Lupinus albus HOM05D005721 ORTHO05D006758 2.6e-255 885.6 665 67.2
PGR102G0208 Punica granatum HOM05D005721 ORTHO05D006758 2.6e-255 885.6 651 69.0
FAN05G3306 Fragaria x ananassa HOM05D005721 ORTHO05D006758 3.4e-255 885.2 653 68.5
Manes.11G029200 Manihot esculenta HOM05D005721 ORTHO05D006758 4.5e-255 884.8 645 67.8
Glyma.07G013000 Glycine max HOM05D005721 ORTHO05D006758 9.9e-255 883.6 647 69.1
Psat4g194600 Pisum sativum HOM05D005721 ORTHO05D006758 1.2e-252 876.7 648 67.3
CsaV3_7G034930 Cucumis sativus L. HOM05D005721 ORTHO05D006758 7.9e-252 874.0 659 67.1
VMungo0331G1465 Vigna mungo HOM05D005721 ORTHO05D006758 1.3e-249 866.7 657 67.0
Sed0006169 Sechium edule HOM05D005721 ORTHO05D006758 1.6e-249 866.3 653 66.9
Ca_23291_v3 Cicer arietinum L. HOM05D005721 ORTHO05D006758 3.7e-249 865.1 667 65.1
Nn8g38942 Nelumbo nucifera HOM05D005721 ORTHO05D006758 9.0e-248 860.5 656 66.5
Phvul.010G142500 Phaseolus vulgaris HOM05D005721 ORTHO05D006758 1.5e-247 859.8 647 67.1
Gohir.D10G064100 Gossypium hirsutum HOM05D005721 ORTHO05D006758 1.3e-246 856.7 581 73.0
MBI01_g16575_MAGBIO Magnolia biondii HOM05D005721 ORTHO05D006758 1.1e-245 853.6 660 67.1
Lj9A516G96 Lonicera japonica HOM05D005721 ORTHO05D006758 1.1e-242 843.6 664 66.9
Hund07658 Selenicereus undatus HOM05D005721 ORTHO05D006758 1.1e-242 843.6 657 65.1
THA.LOC104813944 Tarenaya hassleriana HOM05D005721 ORTHO05D006758 1.8e-240 836.3 660 64.1
C06p47250 Brassica napus HOM05D005721 ORTHO05D006758 4.2e-237 825.1 648 62.8
BolC6t39764H Brassica oleracea HOM05D005721 ORTHO05D006758 4.2e-237 825.1 648 62.8
Rhsim08G0230700 Rhododendron simsii HOM05D005721 ORTHO05D006758 5.5e-237 824.7 659 64.9
A07p39040 Brassica napus HOM05D005721 ORTHO05D006758 9.4e-237 823.9 648 62.8
Thhalv10018233m.g Eutrema salsugineum HOM05D005721 ORTHO05D006758 4.6e-236 821.6 648 63.3
BraA07t31454Z Brassica rapa HOM05D005721 ORTHO05D006758 1.5e-234 816.6 659 61.8
Sp5g27980 Schrenkiella parvula HOM05D005721 ORTHO05D006758 1.3e-233 813.5 653 62.5
CARHR065990 Cardamine hirsuta HOM05D005721 ORTHO05D006758 2.2e-233 812.8 653 62.5
Carub.0002s1978 Capsella rubella HOM05D005721 ORTHO05D006758 2.8e-233 812.4 653 62.5
AT1G73020 Arabidopsis thaliana HOM05D005721 ORTHO05D006758 3.7e-233 812.0 657 62.1
arahy.Tifrunner.gnm1.ann1.NQY1Y2 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.1e-232 810.4 664 62.2
Os01g0706700 Oryza sativa ssp. japonica HOM05D005721 ORTHO05D006758 3.1e-232 808.9 658 61.1
AL2G32770 Arabidopsis lyrata HOM05D005721 ORTHO05D006758 5.3e-232 808.1 657 61.6
arahy.Tifrunner.gnm1.ann1.HT12QJ Arachis hypogaea HOM05D005721 ORTHO05D006758 5.3e-232 808.1 664 61.9
Aa31LG4G3310 Aethionema arabicum HOM05D005721 ORTHO05D006758 1.2e-231 807.0 662 61.6
TPR.G8754 Trifolium pratense HOM05D005721 ORTHO05D006758 4.5e-231 805.1 626 65.2
Oeu001923.1 Olea europaea HOM05D005721 ORTHO05D006758 1.1e-229 800.4 654 65.6
ClCG09G000510 Citrullus lanatus HOM05D005721 ORTHO05D006758 1.4e-229 800.0 656 63.4
ATR0789G086 Amborella trichopoda HOM05D005721 ORTHO05D006758 1.2e-228 797.0 665 62.9
BolC6t38551H Brassica oleracea HOM05D005721 ORTHO05D006758 6.5e-222 774.6 667 59.4
DCAR_031423 Daucus carota HOM05D005721 ORTHO05D006758 5.5e-221 771.5 668 61.4
BcaC08g45678 Brassica carinata HOM05D005721 ORTHO05D006758 1.4e-219 766.9 667 58.9
BraA07t30638Z Brassica rapa HOM05D005721 ORTHO05D006758 1.8e-219 766.5 658 59.6
Hma1.2p1_0388F.1_g142120 Hydrangea macrophylla HOM05D005721 ORTHO05D006758 4.4e-218 761.9 528 72.2
C06p34410 Brassica napus HOM05D005721 ORTHO05D006758 1.8e-216 756.5 667 58.3
A07p30000 Brassica napus HOM05D005721 ORTHO05D006758 2.2e-214 749.6 667 58.2
EL10Ac9g21136 Beta vulgaris HOM05D005721 ORTHO05D006758 3.2e-213 745.7 675 59.9
Sc12g0009950 Simmondsia chinensis HOM05D005721 ORTHO05D006758 7.7e-207 724.5 560 64.8
unitig_26.g8931 Utricularia gibba HOM05D005721 ORTHO05D006758 2.2e-206 723.0 633 58.3
Zm00001eb361150 Zea mays HOM05D005721 ORTHO05D006758 1.2e-196 690.6 556 62.4
AUR62023905 Chenopodium quinoa HOM05D005721 ORTHO05D006758 2.8e-188 662.9 624 57.9
Cpa.g.sc131.22 Carica papaya HOM05D005721 ORTHO05D006758 8.0e-188 661.4 655 56.2
AUR62038341 Chenopodium quinoa HOM05D005721 ORTHO05D006758 2.0e-186 656.8 659 55.2
Ah.01g004440 Amaranthus hybridus HOM05D005721 ORTHO05D006758 2.1e-180 636.7 650 54.6
Oeu026535.1 Olea europaea HOM05D005721 ORTHO05D006758 5.2e-171 605.5 446 69.1
Zm00001eb155350 Zea mays HOM05D005721 ORTHO05D006758 5.1e-166 589.0 499 58.9
Actinidia32127 Actinidia chinensis HOM05D005721 ORTHO05D006758 1.9e-165 587.0 645 51.6
AagrBONN_evm.TU.Sc2ySwM_344.674 Anthoceros agrestis HOM05D005721 ORTHO05D006758 2.0e-162 577.0 661 46.3
Mapoly0004s0214 Marchantia polymorpha HOM05D005721 ORTHO05D006758 4.3e-157 559.3 657 46.4
MELO3C024406.2 Cucumis melo HOM05D005721 ORTHO05D006758 5.8e-154 548.9 595 51.8
SMO147G0374 Selaginella moellendorffii HOM05D005721 ORTHO05D006758 4.6e-151 539.3 655 44.3
Pp3c7_22640 Physcomitrium patens HOM05D005721 ORTHO05D006758 1.0e-150 538.1 686 43.9
CBR_g57226 Chara braunii HOM05D005721 ORTHO05D006758 3.3e-125 453.4 620 40.8
arahy.Tifrunner.gnm1.ann1.NL3M0M Arachis hypogaea HOM05D005721 ORTHO05D006758 1.7e-84 318.2 340 53.2
FAN14G1222 Fragaria x ananassa HOM05D005721 ORTHO05D006758 2.5e-80 304.3 242 60.7
Oeu023783.1 Olea europaea HOM05D005721 ORTHO05D006758 1.1e-56 225.7 281 49.1
Zm00001eb344360 Zea mays HOM05D005721 ORTHO05D006758 6.9e-46 189.9 121 72.7
FvH4_6g32370 Fragaria vesca HOM05D005721 ORTHO05D006758 1.2e-42 179.1 162 56.2
Gorai.010G178600 Gossypium raimondii HOM05D005721 ORTHO05D006758 2.1e-42 178.3 159 60.4
arahy.Tifrunner.gnm1.ann1.402B9T Arachis hypogaea HOM05D005721 ORTHO05D006758 6.0e-42 176.8 275 40.0
Glyma.16G086100 Glycine max HOM05D005721 ORTHO05D006758 8.1e-39 166.4 107 74.8
Zm00001eb192810 Zea mays HOM05D005721 ORTHO05D006758 1.4e-38 165.6 110 75.5
Glyma.16G136400 Glycine max HOM05D005721 ORTHO05D006758 6.9e-38 163.3 107 73.8
arahy.Tifrunner.gnm1.ann1.P3QXG2 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.0e-37 161.8 182 51.1
VMungo0251G0043 Vigna mungo HOM05D005721 ORTHO05D006758 1.6e-34 152.1 134 59.0
Gohir.D06G152751 Gossypium hirsutum HOM05D005721 ORTHO05D006758 2.7e-34 151.4 157 53.5
Zm00001eb419420 Zea mays HOM05D005721 ORTHO05D006758 2.3e-33 148.3 93 76.3
QL05p015216 Quercus lobata HOM05D005721 ORTHO05D006758 3.9e-33 147.5 174 47.7
SEGI_20658 Sequoiadendron giganteum HOM05D005721 ORTHO05D006758 5.1e-33 147.1 236 33.5
Gohir.A06G146950 Gossypium hirsutum HOM05D005721 ORTHO05D006758 5.6e-32 143.7 158 53.2
Glyma.12G149950 Glycine max HOM05D005721 ORTHO05D006758 7.6e-29 133.3 85 75.3
arahy.Tifrunner.gnm1.ann1.F8M988 Arachis hypogaea HOM05D005721 ORTHO05D006758 1.2e-26 125.9 99 62.6
HanXRQChr05g0162621 Helianthus annuus HOM05D005721 ORTHO05D006758 1.3e-23 115.9 82 67.1
arahy.Tifrunner.gnm1.ann1.SY3941 Arachis hypogaea HOM05D005721 ORTHO05D006758 2.4e-22 111.7 91 61.5
HanXRQChr04g0123091 Helianthus annuus HOM05D005721 ORTHO05D006758 2.4e-22 111.7 80 67.5
COL.COLO4_30597 Corchorus olitorius HOM05D005721 ORTHO05D006758 9.3e-19 99.8 87 57.5
Glyma.09G112900 Glycine max HOM05D005721 ORTHO05D006758 4.6e-18 97.4 104 52.9
arahy.Tifrunner.gnm1.ann1.EXE9LQ Arachis hypogaea HOM05D005721 ORTHO05D006758 3.7e-15 87.8 91 50.5
Cfa026500 Carpinus fangiana HOM05D005721 ORTHO05D006758 1.4e-14 85.9 523 22.8
HanXRQChr05g0131511 Helianthus annuus HOM05D005721 ORTHO05D006758 1.4e-14 85.9 89 53.9
Glyma.19G071451 Glycine max HOM05D005721 ORTHO05D006758 9.0e-14 83.2 54 72.2
HanXRQChr09g0276291 Helianthus annuus HOM05D005721 ORTHO05D006758 3.4e-13 81.3 51 72.5
MCO06G118 Micromonas commoda HOM05D005721 ORTHO05D006758 4.5e-13 80.9 216 28.2


User provided reference genes

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