Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g121340.1 Solanum lycopersicum HOM05D008135 ORTHO05D010260 3.4e-40 167.9 87 100.0
Nitab4.5_0006071g0080 Nicotiana tabacum HOM05D008135 ORTHO05D010260 2.3e-33 145.2 84 88.1
Peaxi162Scf00038g01219 Petunia axillaris HOM05D008135 ORTHO05D010260 2.0e-32 142.1 87 83.9
Sopen03g040150 Solanum pennellii HOM05D008135 ORTHO05D010260 1.3e-28 129.4 67 98.5
CSS0040576 Camellia sinensis var. sinensis HOM05D008135 ORTHO05D010260 9.2e-22 106.7 82 69.5
Actinidia32128 Actinidia chinensis HOM05D008135 ORTHO05D010260 3.5e-21 104.8 88 64.8
Oeu052813.1 Olea europaea HOM05D008135 ORTHO05D010260 7.8e-21 103.6 59 84.7
vmacro18825 Vaccinium macrocarpon HOM05D008135 ORTHO05D010260 1.5e-19 99.4 82 63.4
Nitab4.5_0004848g0120 Nicotiana tabacum HOM05D008135 ORTHO05D010260 2.5e-19 98.6 56 85.7
Rhsim08G0230800 Rhododendron simsii HOM05D008135 ORTHO05D010260 2.1e-18 95.5 58 77.6
MSTRG.11003 Avicennia marina HOM05D008135 ORTHO05D010260 6.2e-18 94.0 69 65.2
Thecc.06G106900 Theobroma cacao HOM05D008135 ORTHO05D010260 6.8e-17 90.5 68 69.1
Manes.04G137100 Manihot esculenta HOM05D008135 ORTHO05D010260 2.0e-16 89.0 80 61.2
unitig_88.g27599 Utricularia gibba HOM05D008135 ORTHO05D010260 2.0e-16 89.0 72 59.7
ECA232G1244 Erigeron canadensis HOM05D008135 ORTHO05D010260 5.8e-16 87.4 55 74.5
Dinv30405 Davidia involucrata HOM05D008135 ORTHO05D010260 7.6e-16 87.0 78 56.4
Migut.I00998 Erythranthe guttata HOM05D008135 ORTHO05D010260 9.9e-16 86.7 53 79.2
DCAR_026371 Daucus carota HOM05D008135 ORTHO05D010260 1.3e-15 86.3 62 64.5
Duzib235G1506 Durio zibethinus HOM05D008135 ORTHO05D010260 2.9e-15 85.1 84 53.6
Actinidia21739 Actinidia chinensis HOM05D008135 ORTHO05D010260 4.9e-15 84.3 78 59.0
Potri.001G194100 Populus trichocarpa HOM05D008135 ORTHO05D010260 4.9e-15 84.3 66 63.6
Manes.11G029100 Manihot esculenta HOM05D008135 ORTHO05D010260 8.4e-15 83.6 58 75.9
CiPaw.01G227600 Carya illinoinensis HOM05D008135 ORTHO05D010260 1.1e-14 83.2 79 57.0
Cpa.g.sc131.24 Carica papaya HOM05D008135 ORTHO05D010260 1.9e-14 82.4 71 57.7
Sabra01G0135100 Salix brachista HOM05D008135 ORTHO05D010260 3.2e-14 81.6 65 64.6
Gohir.A05G133400 Gossypium hirsutum HOM05D008135 ORTHO05D010260 7.1e-14 80.5 64 60.9
Gohir.A10G062350 Gossypium hirsutum HOM05D008135 ORTHO05D010260 7.1e-14 80.5 83 51.8
Gohir.D05G135300 Gossypium hirsutum HOM05D008135 ORTHO05D010260 1.2e-13 79.7 64 60.9
Gorai.009G139100 Gossypium raimondii HOM05D008135 ORTHO05D010260 1.2e-13 79.7 64 60.9
Cfa003610 Carpinus fangiana HOM05D008135 ORTHO05D010260 2.1e-13 79.0 78 55.1
RcHm_v2.0_Chr2g0142321 Rosa chinensis HOM05D008135 ORTHO05D010260 2.7e-13 78.6 64 60.9
DCAR_007606 Daucus carota HOM05D008135 ORTHO05D010260 1.0e-12 76.6 63 61.9
FAN05G3342 Fragaria x ananassa HOM05D008135 ORTHO05D010260 1.3e-12 76.3 64 62.5
FvH4_6g32890 Fragaria vesca HOM05D008135 ORTHO05D010260 1.7e-12 75.9 64 62.5
Glyma.07G012900 Glycine max HOM05D008135 ORTHO05D010260 1.7e-12 75.9 78 51.3
Gohir.D10G064050 Gossypium hirsutum HOM05D008135 ORTHO05D010260 1.7e-12 75.9 81 51.9
Gorai.011G068000 Gossypium raimondii HOM05D008135 ORTHO05D010260 1.7e-12 75.9 81 51.9
Prupe.3G053100 Prunus persica HOM05D008135 ORTHO05D010260 3.0e-12 75.1 58 65.5
COL.COLO4_30598 Corchorus olitorius HOM05D008135 ORTHO05D010260 5.1e-12 74.3 84 48.8
FAN02G1144 Fragaria x ananassa HOM05D008135 ORTHO05D010260 6.6e-12 73.9 64 60.9
CsaV3_7G034940 Cucumis sativus L. HOM05D008135 ORTHO05D010260 1.5e-11 72.8 83 53.0
Phvul.010G142400 Phaseolus vulgaris HOM05D008135 ORTHO05D010260 1.5e-11 72.8 61 57.4
QL05p015762 Quercus lobata HOM05D008135 ORTHO05D010260 1.9e-11 72.4 60 58.3
MELO3C024405.2 Cucumis melo HOM05D008135 ORTHO05D010260 2.5e-11 72.0 83 51.8
Glyma.08G196600 Glycine max HOM05D008135 ORTHO05D010260 2.5e-11 72.0 80 50.0
Medtr8g015560 Medicago truncatula HOM05D008135 ORTHO05D010260 9.6e-11 70.1 78 52.6
Eucgr.J02889 Eucalyptus grandis HOM05D008135 ORTHO05D010260 1.3e-10 69.7 91 49.5
TAR383G0415 Trochodendron aralioides HOM05D008135 ORTHO05D010260 1.3e-10 69.7 77 49.4
Atru.chr1.3625 Acer truncatum HOM05D008135 ORTHO05D010260 1.6e-10 69.3 64 59.4
ClCG09G000520 Citrullus lanatus HOM05D008135 ORTHO05D010260 2.1e-10 68.9 83 49.4
QL05p015599 Quercus lobata HOM05D008135 ORTHO05D010260 2.1e-10 68.9 50 66.0
arahy.Tifrunner.gnm1.ann1.4P5WGY Arachis hypogaea HOM05D008135 ORTHO05D010260 2.8e-10 68.6 80 51.2
Lj3g0018742 Lotus japonicus HOM05D008135 ORTHO05D010260 6.2e-10 67.4 57 63.2
arahy.Tifrunner.gnm1.ann1.7STU2J Arachis hypogaea HOM05D008135 ORTHO05D010260 8.1e-10 67.0 80 51.2
Psat4g194640 Pisum sativum HOM05D008135 ORTHO05D010260 1.4e-09 66.2 79 48.1
TAR624G1313 Trochodendron aralioides HOM05D008135 ORTHO05D010260 1.8e-09 65.9 71 53.5
Lalb_Chr25g0280561 Lupinus albus HOM05D008135 ORTHO05D010260 3.1e-09 65.1 60 55.0
QL05p015735 Quercus lobata HOM05D008135 ORTHO05D010260 6.9e-09 63.9 50 62.0
Sed0004354 Sechium edule HOM05D008135 ORTHO05D010260 1.5e-08 62.8 78 48.7
MBI01_g16574_MAGBIO Magnolia biondii HOM05D008135 ORTHO05D010260 3.4e-08 61.6 63 50.8
THA.LOC109116552 Tarenaya hassleriana HOM05D008135 ORTHO05D010260 1.3e-07 59.7 58 53.4
Os01g0558700 Oryza sativa ssp. japonica HOM05D008135 ORTHO05D010260 2.9e-07 58.5 76 51.3
Sc12g0009960 Simmondsia chinensis HOM05D008135 ORTHO05D010260 8.4e-07 57.0 73 43.8
Aqoxy2G03851 Aquilegia oxysepala HOM05D008135 ORTHO05D010260 2.4e-06 55.5 56 55.4


User provided reference genes

Program Settings