Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 0.0e+00 1136.3 594 100.0
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 0.0e+00 1124.4 589 99.7
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 0.0e+00 1103.2 589 97.8
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 1.2e-293 1012.7 592 89.9
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 1.7e-292 1008.8 606 87.1
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 3.3e-288 994.6 601 86.9
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 2.5e-264 915.2 597 82.7
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 6.8e-217 757.7 610 67.0
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 4.3e-211 738.4 594 66.0
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 7.5e-208 727.6 551 69.3
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 1.7e-207 726.5 496 74.8
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 2.1e-205 719.5 565 68.3
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 7.3e-203 711.1 636 61.8
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 3.6e-202 708.8 616 61.2
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 1.1e-201 707.2 555 65.0
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 2.3e-201 706.1 612 62.3
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 5.2e-201 704.9 621 62.8
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 5.2e-201 704.9 643 61.3
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 2.0e-200 703.0 511 70.8
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 9.9e-200 700.7 601 63.6
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 2.4e-198 696.0 594 63.5
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 4.6e-197 691.8 522 68.2
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 7.8e-197 691.0 476 72.5
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 1.7e-196 689.9 480 72.1
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 3.0e-196 689.1 546 65.8
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 6.6e-196 688.0 480 72.9
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 6.6e-196 688.0 478 72.4
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 8.6e-196 687.6 523 68.5
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 1.9e-195 686.4 555 64.3
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 8.1e-194 681.0 512 70.3
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 4.0e-193 678.7 484 70.9
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 4.0e-193 678.7 481 70.5
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 8.9e-193 677.6 608 61.5
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 2.0e-192 676.4 645 59.2
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 2.6e-192 676.0 606 58.9
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 5.8e-192 674.9 603 60.0
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 6.4e-191 671.4 483 68.9
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 9.3e-190 667.5 484 68.8
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 1.6e-189 666.8 603 59.2
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 1.6e-189 666.8 565 64.6
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 2.1e-189 666.4 600 59.0
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 3.5e-189 665.6 606 58.6
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 4.6e-189 665.2 606 58.6
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 7.8e-189 664.5 608 58.9
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 1.0e-188 664.1 545 63.9
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 1.0e-188 664.1 477 71.7
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 3.9e-188 662.1 481 69.9
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 5.1e-188 661.8 481 69.9
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 6.6e-188 661.4 603 59.0
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 8.7e-188 661.0 530 64.9
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 1.9e-187 659.8 479 70.4
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 1.9e-187 659.8 544 63.2
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 5.6e-187 658.3 478 70.3
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 7.3e-187 657.9 611 59.6
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 4.8e-186 655.2 482 68.9
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 6.2e-186 654.8 481 69.0
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 8.1e-186 654.4 527 66.6
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 1.1e-185 654.1 524 64.7
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 1.8e-185 653.3 476 70.2
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 2.4e-185 652.9 503 67.0
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 5.3e-185 651.7 524 66.6
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 1.2e-184 650.6 476 70.0
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 9.9e-184 647.5 506 66.6
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 1.7e-183 646.7 623 60.0
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 6.4e-183 644.8 475 69.3
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 8.4e-183 644.4 464 74.1
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 1.1e-182 644.0 611 59.1
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 1.9e-182 643.3 630 57.5
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 1.6e-181 640.2 520 62.9
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 2.1e-181 639.8 461 70.5
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 3.0e-180 636.0 482 67.6
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 2.5e-179 632.9 476 67.9
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 1.5e-176 623.6 529 62.0
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 1.7e-175 620.2 478 66.9
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 3.8e-175 619.0 541 60.6
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 1.1e-174 617.5 555 59.3
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 7.1e-174 614.8 631 55.2
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.6e-173 613.6 545 62.9
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 4.6e-173 612.1 670 52.8
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 1.0e-172 610.9 485 62.3
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 1.3e-172 610.5 640 56.6
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 2.3e-172 609.8 595 59.0
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 6.7e-172 608.2 526 60.1
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 2.5e-171 606.3 498 63.7
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 2.8e-170 602.8 536 60.3
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 3.7e-170 602.4 489 62.6
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 4.0e-169 599.0 532 60.5
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 1.5e-168 597.0 577 58.4
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 4.5e-168 595.5 479 63.5
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 3.8e-167 592.4 479 63.0
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 1.1e-163 580.9 589 56.0
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 8.2e-162 574.7 544 60.7
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.1e-161 574.3 608 54.9
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 1.3e-159 567.4 393 75.3
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 3.3e-155 552.7 395 72.9
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 7.2e-150 535.0 605 50.7
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 1.1e-145 521.2 427 67.2
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 7.7e-144 515.0 383 67.6
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 3.0e-140 503.1 627 48.0
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 5.2e-140 502.3 483 59.0
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 2.0e-139 500.4 507 55.6
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 7.4e-139 498.4 499 53.1
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 1.7e-135 487.3 500 51.2
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 5.7e-131 472.2 292 82.2
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 6.5e-127 458.8 359 63.8
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 2.8e-122 443.4 308 75.0
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 8.6e-119 431.8 485 47.8
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 1.6e-117 427.6 372 60.5
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.7e-111 407.5 380 59.5
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 6.4e-106 389.0 439 49.7
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 1.3e-103 381.3 456 48.2
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 3.4e-99 366.7 344 56.1
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.2e-98 364.0 281 71.2
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 1.3e-95 354.8 481 43.7
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 4.3e-94 349.7 309 59.9
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 3.1e-92 343.6 382 53.4
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 5.2e-92 342.8 326 59.2
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 3.7e-90 336.7 267 66.7
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 8.6e-87 325.5 548 37.6
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 4.4e-83 313.2 196 81.6
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 4.9e-82 309.7 262 63.0
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 1.1e-81 308.5 365 51.5
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 8.7e-79 298.9 351 49.9
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 4.3e-78 296.6 330 51.8
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 9.6e-78 295.4 330 51.8
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 1.9e-70 271.2 196 73.5
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 2.5e-70 270.8 192 68.8
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 9.0e-68 262.3 286 50.3
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.9e-62 244.6 178 70.2
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 2.5e-62 244.2 531 34.3
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 6.2e-61 239.6 338 45.0
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 6.2e-61 239.6 240 58.3
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 5.5e-57 226.5 155 76.8
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.1e-53 214.5 266 45.5
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 1.7e-50 204.9 157 73.2
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.7e-50 204.9 244 47.1
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 8.4e-50 202.6 245 46.5
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.2e-48 198.7 147 72.8
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.2e-45 188.0 129 74.4
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 1.6e-40 171.8 117 75.2
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 2.4e-36 157.9 150 61.3
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.5e-35 155.2 163 50.9
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 5.9e-35 153.3 246 40.2
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.7e-34 151.8 239 39.3
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 6.3e-29 133.3 122 53.3
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 6.9e-28 129.8 253 36.4
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 4.5e-27 127.1 236 36.0
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 8.5e-26 122.9 105 57.1
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 3.1e-20 104.4 86 48.8
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.6e-16 92.0 73 64.4
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 1.0e-15 89.4 51 86.3
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 1.0e-15 89.4 141 40.4
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 1.4e-15 89.0 74 58.1
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 3.3e-14 84.3 59 71.2
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 1.7e-13 82.0 120 39.2
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 2.8e-13 81.3 55 67.3
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 4.1e-12 77.4 126 41.3
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 4.1e-12 77.4 49 73.5
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 5.3e-12 77.0 76 51.3
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 2.7e-11 74.7 56 60.7
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.0e-10 72.8 70 48.6
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 3.8e-10 70.9 48 81.2
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 6.5e-10 70.1 87 46.0
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 8.5e-10 69.7 164 31.1
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 1.5e-09 68.9 55 61.8
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 5.5e-09 67.0 42 59.5
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 7.2e-09 66.6 42 59.5
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 2.7e-08 64.7 52 61.5
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 1.0e-07 62.8 51 56.9
arahy.Tifrunner.gnm1.ann1.6Z8QT9 Arachis hypogaea HOM05D001329 ORTHO05D010271 1.4e-07 62.4 52 55.8
arahy.Tifrunner.gnm1.ann1.4Z5MNN Arachis hypogaea HOM05D001329 ORTHO05D004946 1.5e-06 58.9 40 72.5


User provided reference genes

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