Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 9.8e-52 206.5 100 100.0
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.4e-50 202.6 100 97.0
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 2.8e-46 188.3 100 91.0
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.7e-46 187.6 100 91.0
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 1.5e-44 182.6 97 91.8
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 5.8e-44 180.6 100 87.0
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 8.3e-43 176.8 91 91.2
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 8.3e-43 176.8 91 91.2
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 8.3e-43 176.8 91 91.2
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 7.8e-41 170.2 92 85.9
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 1.5e-39 166.0 95 82.1
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 3.3e-39 164.9 92 82.6
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 4.3e-39 164.5 95 81.1
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 1.2e-38 162.9 99 76.8
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 2.1e-38 162.2 92 81.5
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 2.1e-38 162.2 97 77.3
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 2.8e-38 161.8 95 80.0
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 4.7e-38 161.0 81 91.4
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 4.7e-38 161.0 92 81.5
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 8.1e-38 160.2 92 81.5
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 2.4e-37 158.7 93 80.6
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 3.1e-37 158.3 84 85.7
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 3.1e-37 158.3 96 78.1
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 3.1e-37 158.3 95 81.1
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 3.1e-37 158.3 99 76.8
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 4.0e-37 157.9 96 76.0
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 8.9e-37 156.8 92 79.3
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.0e-36 155.6 82 84.1
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 2.0e-36 155.6 79 88.6
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 2.0e-36 155.6 93 75.3
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 2.6e-36 155.2 93 77.4
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 2.6e-36 155.2 99 73.7
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 2.6e-36 155.2 95 75.8
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 3.4e-36 154.8 95 77.9
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 3.4e-36 154.8 95 77.9
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 4.4e-36 154.5 81 86.4
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 4.4e-36 154.5 93 77.4
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 4.4e-36 154.5 95 75.8
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 5.8e-36 154.1 94 76.6
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 5.8e-36 154.1 98 76.5
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 5.8e-36 154.1 95 75.8
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 7.6e-36 153.7 82 82.9
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 7.6e-36 153.7 82 82.9
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 7.6e-36 153.7 95 74.7
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 9.9e-36 153.3 93 77.4
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 1.3e-35 152.9 79 86.1
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 1.3e-35 152.9 79 86.1
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 1.3e-35 152.9 85 82.4
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 2.2e-35 152.1 98 72.4
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 2.2e-35 152.1 99 72.7
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 2.9e-35 151.8 94 76.6
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 2.9e-35 151.8 97 74.2
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 3.8e-35 151.4 103 72.8
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 6.4e-35 150.6 91 76.9
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 6.4e-35 150.6 112 67.9
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 8.4e-35 150.2 79 86.1
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.1e-34 149.8 91 74.7
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 1.1e-34 149.8 98 74.5
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.4e-34 149.4 98 72.4
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 1.4e-34 149.4 99 71.7
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.9e-34 149.1 79 83.5
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 1.9e-34 149.1 99 71.7
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 2.4e-34 148.7 84 79.8
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 2.4e-34 148.7 84 79.8
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 2.4e-34 148.7 95 71.6
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 2.4e-34 148.7 99 71.7
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 2.4e-34 148.7 95 75.8
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 3.2e-34 148.3 94 70.2
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 3.2e-34 148.3 94 70.2
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 3.2e-34 148.3 95 73.7
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 3.2e-34 148.3 99 67.7
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 3.2e-34 148.3 104 69.2
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 5.4e-34 147.5 94 74.5
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 5.4e-34 147.5 99 71.7
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 7.1e-34 147.1 99 71.7
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 7.1e-34 147.1 100 70.0
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 7.1e-34 147.1 95 73.7
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 7.1e-34 147.1 95 73.7
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 9.2e-34 146.7 95 73.7
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 9.2e-34 146.7 95 73.7
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 9.2e-34 146.7 91 75.8
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 9.2e-34 146.7 95 72.6
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 9.2e-34 146.7 78 84.6
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.2e-33 146.4 95 70.5
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 1.2e-33 146.4 95 71.6
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 1.6e-33 146.0 81 81.5
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.6e-33 146.0 94 72.3
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 2.1e-33 145.6 95 73.7
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 2.1e-33 145.6 76 85.5
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 2.7e-33 145.2 96 69.8
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.7e-33 145.2 98 68.4
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.5e-33 144.8 91 71.4
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 3.5e-33 144.8 94 71.3
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 4.6e-33 144.4 84 77.4
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 7.8e-33 143.7 94 72.3
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.3e-32 142.9 87 81.6
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 8.7e-32 140.2 79 77.2
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 8.7e-32 140.2 79 77.2
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 8.7e-32 140.2 117 63.2
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 1.1e-31 139.8 88 71.6
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.9e-31 139.0 95 67.4
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 2.5e-31 138.7 99 67.7
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 2.8e-30 135.2 98 64.3
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 4.8e-30 134.4 96 64.6
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 1.4e-29 132.9 68 86.8
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 5.3e-29 131.0 86 67.4
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 9.0e-29 130.2 65 87.7
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 3.4e-28 128.3 66 86.4
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 7.6e-28 127.1 66 83.3
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 1.7e-27 125.9 66 81.8
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 2.4e-26 122.1 82 64.6
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 3.2e-26 121.7 90 64.4
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 1.0e-24 116.7 72 75.0
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.5e-23 112.8 53 90.6
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.9e-23 112.5 74 66.2
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 4.3e-23 111.3 63 74.6
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 1.6e-22 109.4 91 60.4
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 2.8e-22 108.6 68 76.5
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 1.1e-21 106.7 63 73.0
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 1.4e-21 106.3 86 55.8
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 1.4e-21 106.3 62 74.2
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 2.4e-21 105.5 66 69.7
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 6.9e-21 104.0 63 69.8
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-20 102.4 64 68.8
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 2.6e-20 102.1 100 48.0
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 6.4e-19 97.4 73 65.8
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 3.5e-17 91.7 63 65.1
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.3e-16 89.7 65 66.2
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 8.7e-16 87.0 61 72.1
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 4.3e-15 84.7 84 48.8
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 1.1e-13 80.1 73 52.1
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 1.8e-13 79.3 53 66.0
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 1.8e-13 79.3 79 48.1
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 1.2e-12 76.6 80 51.2
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 4.5e-12 74.7 33 93.9
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 2.1e-06 55.8 74 36.5


User provided reference genes

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