Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g120740.1 Solanum lycopersicum HOM05D006672 ORTHO05D007769 3.7e-88 328.2 167 100.0
Sopen03g039560 Solanum pennellii HOM05D006672 ORTHO05D007769 1.2e-86 323.2 169 98.8
PGSC0003DMG400040414 Solanum tuberosum HOM05D006672 ORTHO05D007769 1.1e-66 256.9 171 81.3
Nitab4.5_0001315g0240 Nicotiana tabacum HOM05D006672 ORTHO05D007769 2.4e-58 229.2 173 75.1
Nitab4.5_0008314g0010 Nicotiana tabacum HOM05D006672 ORTHO05D007769 1.0e-53 213.8 177 69.5
Cc04_g03140 Coffea canephora HOM05D006672 ORTHO05D007769 1.8e-37 159.8 182 53.8
Oeu040367.1 Olea europaea HOM05D006672 ORTHO05D007769 2.3e-37 159.5 176 54.5
Migut.D01021 Erythranthe guttata HOM05D006672 ORTHO05D007769 5.3e-34 148.3 175 53.7
Rhsim12G0199700 Rhododendron simsii HOM05D006672 ORTHO05D007769 2.6e-33 146.0 170 54.1
Actinidia24746 Actinidia chinensis HOM05D006672 ORTHO05D007769 2.1e-30 136.3 176 49.4
Dinv30493 Davidia involucrata HOM05D006672 ORTHO05D007769 4.7e-30 135.2 167 52.1
TAR636G2852 Trochodendron aralioides HOM05D006672 ORTHO05D007769 1.0e-29 134.0 175 48.6
SalBow1G8254 Salvia bowleyana HOM05D000380 ORTHO05D000561 6.7e-29 131.3 167 50.3
SGA_v2.0_scaffold4G02004 Striga asiatica HOM05D006672 ORTHO05D007769 7.4e-28 127.9 174 50.0
Actinidia08988 Actinidia chinensis HOM05D000726 ORTHO05D007769 2.8e-27 125.9 151 53.0
MSTRG.22671 Avicennia marina HOM05D006672 ORTHO05D007769 2.8e-27 125.9 178 48.9
Cfa009362 Carpinus fangiana HOM05D006672 ORTHO05D007769 4.8e-27 125.2 180 47.8
Peaxi162Scf00015g00013 Petunia axillaris HOM05D006672 ORTHO05D007769 6.3e-27 124.8 166 53.0
Hma1.2p1_2022F.1_g311340 Hydrangea macrophylla HOM05D006672 ORTHO05D007769 1.1e-26 124.0 164 48.8
ECA234G2073 Erigeron canadensis HOM05D006672 ORTHO05D007769 9.1e-26 120.9 175 46.9
Glyma.08G205200 Glycine max HOM05D006672 ORTHO05D007769 3.4e-25 119.0 175 45.1
Lsat_1_v5_gn_2_34400 Lactuca sativa HOM05D008424 ORTHO05D007769 4.5e-25 118.6 182 47.8
Haze_12408 Corylus avellana HOM05D006672 ORTHO05D007769 1.3e-24 117.1 178 47.2
vmacro16964 Vaccinium macrocarpon HOM05D006672 ORTHO05D007769 1.7e-24 116.7 188 46.3
FvH4_6g31600 Fragaria vesca HOM05D006672 ORTHO05D007769 2.9e-24 115.9 171 47.4
QL05p022164 Quercus lobata HOM05D006672 ORTHO05D007769 2.9e-24 115.9 180 45.6
HanXRQChr10g0313401 Helianthus annuus HOM05D006672 ORTHO05D007769 8.5e-24 114.4 162 49.4
DCAR_026329 Daucus carota HOM05D006672 ORTHO05D007769 2.5e-23 112.8 168 44.6
DCAR_022631 Daucus carota HOM05D006672 ORTHO05D007769 3.2e-23 112.5 163 45.4
FAN09G1670 Fragaria x ananassa HOM05D006672 ORTHO05D007769 7.2e-23 111.3 168 47.0
CANSAT56G0062 Cannabis sativa HOM05D006672 ORTHO05D007769 9.4e-23 110.9 179 40.2
Lsat_1_v5_gn_5_130661 Lactuca sativa HOM05D006672 ORTHO05D007769 1.6e-22 110.2 150 50.7
EL10Ac9g22019 Beta vulgaris HOM05D000202 ORTHO05D000117 2.1e-22 109.8 169 45.6
FAN14G5379 Fragaria x ananassa HOM05D006672 ORTHO05D007769 2.1e-22 109.8 171 46.2
FAN05G5736 Fragaria x ananassa HOM05D006672 ORTHO05D007769 2.7e-22 109.4 175 46.9
THA.LOC104800426 Tarenaya hassleriana HOM05D006672 ORTHO05D007769 3.6e-22 109.0 174 46.0
CiPaw.02G149600 Carya illinoinensis HOM05D006672 ORTHO05D007769 4.7e-22 108.6 187 46.0
Potri.003G053500 Populus trichocarpa HOM05D006672 ORTHO05D007769 2.3e-21 106.3 183 44.3
TWI12G1441 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 3.9e-21 105.5 182 44.0
TWI75G0771 Tripterygium wilfordii HOM05D006672 ORTHO05D007769 6.7e-21 104.8 183 42.1
unitig_899.g14774 Utricularia gibba HOM05D006672 ORTHO05D007769 8.8e-21 104.4 168 43.5
RcHm_v2.0_Chr2g0138661 Rosa chinensis HOM05D006672 ORTHO05D007769 1.1e-20 104.0 174 44.3
Manes.04G128475 Manihot esculenta HOM05D006672 ORTHO05D007769 1.5e-20 103.6 191 42.4
Ciclev10026595m.g Citrus clementina HOM05D006672 ORTHO05D007769 2.0e-20 103.2 182 43.4
Nn8g39154 Nelumbo nucifera HOM05D006672 ORTHO05D007769 2.0e-20 103.2 190 42.1
Phvul.010G149100 Phaseolus vulgaris HOM05D006672 ORTHO05D007769 3.3e-20 102.4 176 40.9
Lsat_1_v5_gn_5_130760 Lactuca sativa HOM05D006672 ORTHO05D007769 4.4e-20 102.1 110 57.3
AL1G27320 Arabidopsis lyrata HOM05D006672 ORTHO05D007769 5.7e-20 101.7 173 42.2
Nitab4.5_0002600g0060 Nicotiana tabacum HOM05D006672 ORTHO05D007769 9.7e-20 100.9 95 64.2
Atru.chr1.3318 Acer truncatum HOM05D006672 ORTHO05D007769 1.3e-19 100.5 175 42.3
Aqoxy7G01641 Aquilegia oxysepala HOM05D006672 ORTHO05D007769 1.7e-19 100.1 173 38.7
arahy.Tifrunner.gnm1.ann1.MVJ1PZ Arachis hypogaea HOM05D006672 ORTHO05D007769 2.8e-19 99.4 169 45.6
Carub.0001s1499 Capsella rubella HOM05D006672 ORTHO05D007769 2.8e-19 99.4 173 43.9
MBI04_g22016_MAGBIO Magnolia biondii HOM05D006672 ORTHO05D007769 2.8e-19 99.4 176 43.8
Ah.01g021520 Amaranthus hybridus HOM05D006672 ORTHO05D007769 3.7e-19 99.0 175 42.3
Sp1g13550 Schrenkiella parvula HOM05D006672 ORTHO05D007769 4.8e-19 98.6 180 41.1
arahy.Tifrunner.gnm1.ann1.07RGV5 Arachis hypogaea HOM05D006672 ORTHO05D007769 1.1e-18 97.4 173 43.9
Lj3g0012066 Lotus japonicus HOM05D006672 ORTHO05D007769 1.1e-18 97.4 171 43.9
Lalb_Chr25g0279941 Lupinus albus HOM05D006672 ORTHO05D007769 1.4e-18 97.1 170 42.9
AT1G15230 Arabidopsis thaliana HOM05D006672 ORTHO05D007769 1.8e-18 96.7 173 44.5
AUR62011637 Chenopodium quinoa HOM05D006672 ORTHO05D007769 2.4e-18 96.3 138 48.6
AUR62016468 Chenopodium quinoa HOM05D006672 ORTHO05D007769 5.3e-18 95.1 132 47.7
PSO832G0654 Papaver somniferum HOM05D006672 ORTHO05D007769 7.0e-18 94.7 149 44.3
PSO782G0352 Papaver somniferum HOM05D006672 ORTHO05D007769 9.1e-18 94.4 173 41.6
BraA06t24303Z Brassica rapa HOM05D006672 ORTHO05D007769 2.6e-17 92.8 178 45.5
arahy.Tifrunner.gnm1.ann1.HW7XL7 Arachis hypogaea HOM05D006672 ORTHO05D007769 4.5e-17 92.0 106 51.9
Thhalv10008936m.g Eutrema salsugineum HOM05D006672 ORTHO05D007769 4.5e-17 92.0 177 40.7
VMungo0331G0342 Vigna mungo HOM05D006672 ORTHO05D007769 4.5e-17 92.0 174 40.2
MELO3C012968.2 Cucumis melo HOM05D006672 ORTHO05D007769 5.9e-17 91.7 161 43.5
COL.COLO4_30405 Corchorus olitorius HOM05D006672 ORTHO05D007769 7.7e-17 91.3 187 41.7
ClCG07G013120 Citrullus lanatus HOM05D006672 ORTHO05D007769 1.3e-16 90.5 162 43.2
CARHR015760 Cardamine hirsuta HOM05D006672 ORTHO05D007769 2.9e-16 89.4 178 41.0
BcaC05g25452 Brassica carinata HOM05D006672 ORTHO05D007769 3.8e-16 89.0 183 41.0
C05p13360 Brassica napus HOM05D006672 ORTHO05D007769 3.8e-16 89.0 183 41.0
BolC5t30073H Brassica oleracea HOM05D006672 ORTHO05D007769 6.5e-16 88.2 174 39.7
Prupe.3G068600 Prunus persica HOM05D006672 ORTHO05D007769 1.5e-15 87.0 174 43.1
Thecc.06G091100 Theobroma cacao HOM05D006672 ORTHO05D007769 1.5e-15 87.0 186 39.8
Sabra03G0029900 Salix brachista HOM05D006672 ORTHO05D007769 1.9e-15 86.7 142 46.5
A06p11230 Brassica napus HOM05D006672 ORTHO05D007769 2.5e-15 86.3 180 41.1
arahy.Tifrunner.gnm1.ann1.N61AC9 Arachis hypogaea HOM05D006672 ORTHO05D007769 7.2e-15 84.7 106 49.1
arahy.Tifrunner.gnm1.ann1.ZTP7X5 Arachis hypogaea HOM05D006672 ORTHO05D007769 9.4e-15 84.3 106 48.1
CSS0000508 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 1.6e-14 83.6 160 41.9
TPR.G17666 Trifolium pratense HOM05D006672 ORTHO05D007769 2.7e-14 82.8 167 39.5
arahy.Tifrunner.gnm1.ann1.C7681Z Arachis hypogaea HOM05D006672 ORTHO05D007769 4.7e-14 82.0 124 45.2
BcaB03g13070 Brassica carinata HOM05D005761 ORTHO05D007286 6.1e-14 81.6 148 43.2
BcaC05g25464 Brassica carinata HOM05D006672 ORTHO05D007769 1.0e-13 80.9 181 39.8
Gohir.D05G130600 Gossypium hirsutum HOM05D006672 ORTHO05D007769 1.4e-13 80.5 204 39.7
Gorai.009G134300 Gossypium raimondii HOM05D006672 ORTHO05D007769 1.4e-13 80.5 204 39.7
Sc15g0001280 Simmondsia chinensis HOM05D006672 ORTHO05D007769 1.4e-13 80.5 172 39.5
arahy.Tifrunner.gnm1.ann1.QF27IC Arachis hypogaea HOM05D006672 ORTHO05D007769 1.8e-13 80.1 124 44.4
CsaV3_3G025030 Cucumis sativus L. HOM05D006672 ORTHO05D007769 4.0e-13 79.0 158 39.2
Gohir.A05G131200 Gossypium hirsutum HOM05D006672 ORTHO05D007769 5.2e-13 78.6 196 41.3
BcaC05g25462 Brassica carinata HOM05D006672 ORTHO05D007769 1.5e-12 77.0 175 37.1
Sed0005168 Sechium edule HOM05D006672 ORTHO05D007769 1.5e-12 77.0 175 35.4
arahy.Tifrunner.gnm1.ann1.K72DJ3 Arachis hypogaea HOM05D006672 ORTHO05D007769 2.6e-12 76.3 98 48.0
arahy.Tifrunner.gnm1.ann1.HQ5KA8 Arachis hypogaea HOM05D006672 ORTHO05D007769 7.5e-12 74.7 98 44.9
SGA_v2.0_scaffold5G02564 Striga asiatica HOM05D000085 ORTHO05D000274 7.5e-12 74.7 142 39.4
Lsat_1_v5_gn_5_130640 Lactuca sativa HOM05D006672 ORTHO05D007769 1.7e-11 73.6 68 63.2
MD17G1192500 Malus domestica HOM05D006672 ORTHO05D007769 1.7e-11 73.6 171 39.8
Medtr0206s0010 Medicago truncatula HOM05D006672 ORTHO05D007769 1.7e-11 73.6 90 48.9
Psat7g250280 Pisum sativum HOM05D006672 ORTHO05D007769 1.7e-11 73.6 93 50.5
Duzib160G0370 Durio zibethinus HOM05D000726 ORTHO05D007769 6.3e-11 71.6 161 39.1
Ca_20375_v3 Cicer arietinum L. HOM05D006672 ORTHO05D007769 8.2e-11 71.2 161 34.2
ATR0829G196 Amborella trichopoda HOM05D006672 ORTHO05D007769 4.1e-10 68.9 149 38.3
Medtr4g012950 Medicago truncatula HOM05D006672 ORTHO05D007769 4.1e-10 68.9 90 46.7
SEGI_22972 Sequoiadendron giganteum HOM05D006672 ORTHO05D007769 1.2e-09 67.4 159 39.6
arahy.Tifrunner.gnm1.ann1.XTGM9Z Arachis hypogaea HOM05D006672 ORTHO05D007769 1.6e-09 67.0 120 37.5
Aa31LG7G40 Aethionema arabicum HOM05D006672 ORTHO05D007769 5.9e-09 65.1 159 37.1
Rhsim06G0080600 Rhododendron simsii HOM05D006672 ORTHO05D007769 7.7e-09 64.7 64 53.1
PGR102G2442 Punica granatum HOM05D006672 ORTHO05D007769 1.0e-08 64.3 159 39.0
Duzib235G0275 Durio zibethinus HOM05D006672 ORTHO05D007769 2.9e-08 62.8 62 56.5
Mapoly0141s0006 Marchantia polymorpha HOM05D006672 ORTHO05D007769 2.9e-08 62.8 164 34.8
Pp3c1_40010 Physcomitrium patens HOM05D006672 ORTHO05D007769 2.9e-08 62.8 159 35.8
Zm00001eb098380 Zea mays HOM05D006672 ORTHO05D007769 3.8e-08 62.4 54 61.1
Sc12g0009390 Simmondsia chinensis HOM05D006672 ORTHO05D007769 1.9e-07 60.1 107 42.1
CSS0037944 Camellia sinensis var. sinensis HOM05D006672 ORTHO05D007769 4.2e-07 58.9 134 38.1
Lsat_1_v5_gn_4_162060 Lactuca sativa HOM05D006672 ORTHO05D007769 5.5e-07 58.5 60 56.7
HPP92_005483 Vanilla planifolia HOM05D006672 ORTHO05D007769 9.4e-07 57.8 74 44.6
SMO364G0119 Selaginella moellendorffii HOM05D006672 ORTHO05D007769 2.1e-06 56.6 135 38.5
arahy.Tifrunner.gnm1.ann1.DAY3RM Arachis hypogaea HOM05D006672 ORTHO05D007769 2.7e-06 56.2 160 35.0
Os09g0344700 Oryza sativa ssp. japonica HOM05D006672 ORTHO05D007769 3.6e-06 55.8 84 44.0


User provided reference genes

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