Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 4.3e-94 347.8 159 100.0
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 6.3e-93 344.0 159 98.7
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.1e-92 341.7 159 96.9
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.0e-90 336.7 157 96.2
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 5.0e-90 334.3 157 94.9
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 1.4e-89 332.8 157 96.2
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 3.2e-89 331.6 157 93.6
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 3.9e-87 324.7 156 93.6
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 3.9e-87 324.7 158 91.8
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 5.7e-86 320.9 158 89.9
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.3e-85 319.7 158 89.9
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 2.8e-85 318.5 156 90.4
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 6.3e-85 317.4 158 88.6
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.1e-84 316.6 156 88.5
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 5.3e-84 314.3 152 90.8
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 9.1e-84 313.5 156 88.5
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 1.7e-82 309.3 158 86.7
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 2.9e-82 308.5 158 86.7
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 5.0e-82 307.8 156 85.3
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 5.0e-82 307.8 156 85.9
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 6.5e-82 307.4 156 86.5
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.1e-81 306.6 158 84.8
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 1.1e-81 306.6 158 88.0
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 1.1e-81 306.6 156 85.9
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 4.2e-81 304.7 156 86.5
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 5.5e-81 304.3 155 85.8
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 5.5e-81 304.3 156 84.6
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 1.2e-80 303.1 158 84.2
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 2.1e-80 302.4 158 84.2
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 2.7e-80 302.0 156 84.6
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 2.7e-80 302.0 157 84.1
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 6.1e-80 300.8 155 84.5
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 8.0e-80 300.4 156 84.0
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 1.8e-79 299.3 152 85.5
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 3.9e-79 298.1 157 84.7
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 5.2e-79 297.7 155 83.9
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 6.7e-79 297.4 156 82.1
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 6.7e-79 297.4 157 83.4
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 6.7e-79 297.4 158 81.6
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 8.8e-79 297.0 156 82.7
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 8.8e-79 297.0 156 82.1
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 8.8e-79 297.0 158 82.3
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 8.8e-79 297.0 156 82.7
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 8.8e-79 297.0 157 81.5
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 2.0e-78 295.8 158 80.4
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.6e-78 295.4 155 81.9
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 3.3e-78 295.0 155 82.6
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 3.3e-78 295.0 158 81.6
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 3.3e-78 295.0 158 81.0
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 5.7e-78 294.3 159 81.1
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 5.7e-78 294.3 156 82.1
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 7.4e-78 293.9 158 81.6
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.3e-77 293.1 156 80.1
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 1.3e-77 293.1 156 80.1
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.3e-77 293.1 155 81.3
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.3e-77 293.1 156 81.4
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 1.7e-77 292.7 156 80.1
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 1.7e-77 292.7 158 81.6
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 2.2e-77 292.4 156 82.1
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 2.2e-77 292.4 156 81.4
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.8e-77 292.0 158 80.4
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 3.7e-77 291.6 155 80.0
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 3.7e-77 291.6 156 80.8
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.7e-77 291.6 156 80.8
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 3.7e-77 291.6 156 80.8
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 4.8e-77 291.2 160 80.0
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 4.8e-77 291.2 156 82.1
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 4.8e-77 291.2 159 81.1
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 6.3e-77 290.8 156 79.5
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 6.3e-77 290.8 156 82.1
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 6.3e-77 290.8 156 80.1
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.1e-76 290.0 156 80.1
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 1.1e-76 290.0 156 80.1
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 1.1e-76 290.0 156 80.1
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 1.1e-76 290.0 158 79.1
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 1.1e-76 290.0 157 79.6
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 1.1e-76 290.0 156 79.5
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 1.4e-76 289.7 156 80.1
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.4e-76 289.7 158 78.5
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.4e-76 289.7 158 78.5
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 1.4e-76 289.7 158 80.4
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 1.4e-76 289.7 156 80.8
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 1.8e-76 289.3 157 81.5
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 1.8e-76 289.3 149 81.9
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 2.4e-76 288.9 156 78.8
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 2.4e-76 288.9 156 79.5
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 3.1e-76 288.5 156 81.4
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 3.1e-76 288.5 156 81.4
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 3.1e-76 288.5 153 79.7
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 4.1e-76 288.1 156 79.5
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 4.1e-76 288.1 156 79.5
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 5.3e-76 287.7 156 79.5
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 7.0e-76 287.3 158 77.8
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.2e-75 286.6 156 80.1
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 1.2e-75 286.6 155 78.7
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.2e-75 286.6 157 79.6
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 1.2e-75 286.6 158 79.1
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.6e-75 286.2 158 79.1
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 2.0e-75 285.8 156 80.1
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 2.0e-75 285.8 156 79.5
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 3.5e-75 285.0 157 79.0
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 3.5e-75 285.0 156 78.2
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 7.7e-75 283.9 156 79.5
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.0e-74 283.5 152 79.6
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 1.3e-74 283.1 149 81.2
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 1.3e-74 283.1 157 79.0
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.7e-74 282.7 157 78.3
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.7e-74 282.7 149 79.2
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.7e-74 282.7 149 79.2
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 2.9e-74 282.0 156 76.9
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 2.9e-74 282.0 156 78.2
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 2.9e-74 282.0 157 77.1
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 2.9e-74 282.0 149 80.5
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 2.9e-74 282.0 152 79.6
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 2.9e-74 282.0 152 79.6
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 3.8e-74 281.6 156 77.6
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 3.8e-74 281.6 156 76.9
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 3.8e-74 281.6 160 76.9
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 3.8e-74 281.6 155 76.1
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 5.0e-74 281.2 152 79.6
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 6.5e-74 280.8 155 76.8
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 8.5e-74 280.4 157 77.7
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.1e-73 280.0 156 75.6
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.5e-73 279.6 159 76.7
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 1.5e-73 279.6 152 79.6
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.9e-73 279.3 150 79.3
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 2.5e-73 278.9 156 78.8
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 3.2e-73 278.5 152 77.0
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 5.5e-73 277.7 152 75.0
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 5.5e-73 277.7 158 78.5
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 5.5e-73 277.7 156 75.0
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 1.2e-72 276.6 149 80.5
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 1.6e-72 276.2 152 77.0
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 4.7e-72 274.6 157 77.1
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 2.3e-71 272.3 160 72.5
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 3.0e-71 271.9 157 73.9
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 4.0e-71 271.6 157 73.9
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 1.5e-70 269.6 157 73.2
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 2.0e-70 269.2 157 73.2
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 2.6e-70 268.9 159 74.8
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 3.4e-70 268.5 157 73.9
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 3.4e-70 268.5 149 77.2
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.1e-68 263.5 149 76.5
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.4e-68 262.3 136 83.8
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 2.9e-66 255.4 149 72.5
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 8.8e-63 243.8 152 69.1
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 5.7e-62 241.1 153 69.9
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.7e-61 239.6 165 65.5
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 4.9e-61 238.0 155 65.8
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 4.9e-61 238.0 158 65.8
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 6.3e-61 237.7 162 64.8
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 5.9e-59 231.1 159 65.4
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.5e-57 226.5 120 81.7
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 2.2e-53 212.6 116 78.4
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.9e-41 172.9 86 88.4
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 9.5e-41 170.6 89 85.4
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 1.7e-34 149.8 103 68.0
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 3.3e-33 145.6 85 72.9
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.1e-31 140.6 93 67.7
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 2.9e-29 132.5 144 45.1
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 1.1e-28 130.6 116 56.0
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.1e-20 104.0 70 70.0
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 7.8e-19 97.8 60 76.7
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 6.2e-16 88.2 51 64.7
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 9.3e-12 74.3 62 54.8


User provided reference genes

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