Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 0.0e+00 1380.2 710 100.0
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 0.0e+00 1343.6 710 97.3
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 0.0e+00 1267.3 744 89.2
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 9.0e-309 1063.1 713 79.1
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 1.3e-267 926.4 737 68.4
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.2e-244 850.1 788 62.1
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 2.8e-241 839.0 776 62.8
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 2.7e-119 433.7 761 39.9
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 1.5e-106 391.3 843 35.9
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 1.7e-105 387.9 727 39.8
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 2.3e-102 377.5 794 36.3
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.6e-100 371.3 718 37.3
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.6e-100 371.3 718 37.3
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 2.1e-100 370.9 682 39.7
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 1.4e-99 368.2 900 33.4
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 1.8e-99 367.9 752 39.4
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 9.9e-98 362.1 737 36.9
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.9e-96 357.8 837 35.6
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 4.6e-95 353.2 453 46.4
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 6.0e-95 352.8 751 37.9
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 3.9e-94 350.1 763 36.4
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 1.1e-93 348.6 782 35.4
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 5.6e-93 346.3 779 36.1
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 3.1e-91 340.5 737 34.9
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 1.7e-89 334.7 745 35.0
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 2.5e-88 330.9 672 36.0
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 1.8e-86 324.7 743 35.0
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 3.0e-86 323.9 740 35.3
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 5.1e-86 323.2 721 36.6
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 5.7e-85 319.7 863 32.1
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 1.4e-83 315.1 835 32.7
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 6.9e-83 312.8 740 35.4
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.2e-82 312.0 762 33.6
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 1.2e-82 312.0 762 33.5
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 2.0e-82 311.2 749 34.2
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 3.4e-82 310.5 392 46.7
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 3.4e-82 310.5 728 34.2
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 7.7e-82 309.3 745 34.4
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 2.5e-80 304.3 745 33.3
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 4.2e-80 303.5 639 37.9
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 7.2e-80 302.8 741 34.7
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 2.7e-79 300.8 827 33.1
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 1.4e-78 298.5 738 34.7
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 3.0e-78 297.4 778 32.3
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 1.9e-77 294.7 377 46.7
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 8.2e-76 289.3 762 33.2
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 1.3e-73 282.0 923 30.1
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 2.9e-73 280.8 719 32.0
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 3.8e-73 280.4 734 33.1
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 5.0e-73 280.0 777 32.3
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 6.5e-73 279.6 775 32.5
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 1.9e-72 278.1 701 33.4
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 7.2e-72 276.2 744 33.6
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 6.1e-71 273.1 694 34.0
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 7.9e-71 272.7 702 33.9
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 2.3e-70 271.2 807 31.5
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 8.8e-70 269.2 709 31.7
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 1.7e-68 265.0 736 31.5
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.2e-68 264.6 670 35.5
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 3.7e-68 263.8 738 32.9
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 4.8e-68 263.5 736 34.2
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 5.3e-67 260.0 664 35.1
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 2.0e-66 258.1 718 31.3
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 2.2e-65 254.6 829 30.9
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 2.2e-65 254.6 662 34.7
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 2.9e-65 254.2 734 30.9
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 3.8e-65 253.8 763 33.0
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 8.5e-65 252.7 755 31.4
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 9.4e-64 249.2 773 32.2
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 4.7e-63 246.9 667 33.9
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 6.1e-63 246.5 721 31.3
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 6.7e-62 243.0 753 30.3
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 1.1e-59 235.7 845 28.4
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 2.4e-59 234.6 744 31.2
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 1.1e-56 225.7 838 27.8
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 9.4e-56 222.6 748 30.2
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.6e-55 221.9 771 28.9
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 3.6e-55 220.7 722 29.2
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 3.6e-55 220.7 708 30.1
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.4e-54 218.8 344 41.3
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 8.8e-54 216.1 656 30.0
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 7.5e-53 213.0 775 28.9
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 9.7e-53 212.6 650 32.0
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 4.8e-52 210.3 811 27.1
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 8.2e-52 209.5 947 26.2
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.1e-51 209.1 757 28.8
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 1.8e-51 208.4 704 29.3
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 4.1e-51 207.2 702 31.1
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 2.7e-50 204.5 704 29.1
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 2.7e-50 204.5 718 28.1
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 1.0e-49 202.6 928 25.2
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 2.9e-49 201.1 725 27.6
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 1.5e-48 198.7 641 31.4
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 3.2e-48 197.6 611 31.3
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 1.0e-46 192.6 948 26.3
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 7.5e-45 186.4 939 26.2
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 2.8e-44 184.5 777 28.7
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 4.8e-44 183.7 564 31.4
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 2.4e-43 181.4 741 28.3
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 4.1e-43 180.6 421 34.9
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 1.2e-42 179.1 965 25.6
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 2.7e-42 177.9 728 29.0
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 2.3e-41 174.9 721 27.2
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 2.9e-41 174.5 729 25.8
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 4.2e-40 170.6 759 27.8
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 7.2e-40 169.9 756 27.6
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 1.8e-38 165.2 739 26.0
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 8.9e-38 162.9 502 30.3
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 2.6e-37 161.4 734 26.2
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 1.3e-36 159.1 751 26.2
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 3.7e-36 157.5 416 31.7
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 6.3e-36 156.8 761 26.5
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 1.8e-35 155.2 724 25.8
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 3.5e-34 151.0 559 28.8
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 2.9e-33 147.9 761 25.8
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 3.3e-32 144.4 755 26.0
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 3.1e-30 137.9 752 26.1
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 9.8e-29 132.9 245 36.7
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 1.3e-28 132.5 710 26.2
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 8.3e-28 129.8 751 25.4
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 4.6e-26 124.0 625 26.1
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.2e-23 115.9 113 50.4
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 2.8e-23 114.8 785 24.1
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 1.4e-22 112.5 105 57.1
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 2.3e-22 111.7 479 29.9
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 1.2e-21 109.4 760 23.4
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.9e-20 104.8 179 39.7
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.0e-17 96.3 111 46.8
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 5.6e-16 90.5 128 40.6
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 5.6e-16 90.5 675 23.3
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 2.1e-15 88.6 169 38.5
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 6.2e-15 87.0 661 24.5
Aa31LG7G290 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.5e-13 82.4 147 34.7
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 2.0e-13 82.0 137 40.9
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 2.2e-12 78.6 152 32.2
Haze_16456 Corylus avellana HOM05D004831 ORTHO05D003975 3.7e-12 77.8 118 43.2
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 6.4e-12 77.0 104 46.2
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 5.4e-11 73.9 85 44.7
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 9.2e-11 73.2 108 38.9
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 3.6e-07 61.2 229 24.5
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 3.6e-07 61.2 284 25.7
CAN.G675.22 Capsicum annuum HOM05D004831 ORTHO05D003975 8.1e-07 60.1 41 75.6
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 8.1e-07 60.1 94 42.6
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 1.1e-06 59.7 116 34.5


User provided reference genes

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