Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g120230.3 Solanum lycopersicum HOM05D004642 ORTHO05D005466 5.8e-263 911.0 718 100.0
Sopen03g039110 Solanum pennellii HOM05D004642 ORTHO05D005466 3.8e-254 881.7 716 96.9
PGSC0003DMG400002564 Solanum tuberosum HOM05D004642 ORTHO05D005466 1.5e-218 763.5 676 92.5
Nitab4.5_0000671g0060 Nicotiana tabacum HOM05D004642 ORTHO05D005466 3.2e-176 622.9 685 69.8
Nitab4.5_0005851g0030 Nicotiana tabacum HOM05D004642 ORTHO05D005466 8.1e-172 608.2 718 66.7
Peaxi162Scf00015g00335 Petunia axillaris HOM05D004642 ORTHO05D005466 8.4e-161 571.6 733 75.0
CAN.G438.64 Capsicum annuum HOM05D004642 ORTHO05D005466 4.0e-139 499.6 720 69.6
Prupe.3G071700 Prunus persica HOM05D004642 ORTHO05D005466 2.0e-93 347.8 708 42.7
Cc04_g03480 Coffea canephora HOM05D004642 ORTHO05D005466 3.6e-87 327.0 679 42.0
Potri.001G179600 Populus trichocarpa HOM05D004642 ORTHO05D005466 6.1e-87 326.2 679 45.1
QL05p024308 Quercus lobata HOM05D004642 ORTHO05D005466 1.2e-85 322.0 706 45.2
vmacro18915 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 3.7e-84 317.0 679 39.2
Cfa002061 Carpinus fangiana HOM05D004642 ORTHO05D005466 1.4e-78 298.5 721 47.4
Actinidia08974 Actinidia chinensis HOM05D004642 ORTHO05D005466 7.5e-77 292.7 723 46.7
MD17G1195700 Malus domestica HOM05D004642 ORTHO05D005466 5.4e-75 286.6 722 40.7
Gohir.A05G129515 Gossypium hirsutum HOM05D004642 ORTHO05D005466 2.0e-74 284.6 493 44.6
Gorai.009G133100 Gossypium raimondii HOM05D004642 ORTHO05D005466 7.8e-74 282.7 520 43.8
Actinidia24760 Actinidia chinensis HOM05D004642 ORTHO05D005466 2.3e-73 281.2 528 45.5
Sabra01G0147200 Salix brachista HOM05D004642 ORTHO05D005466 2.1e-71 274.6 818 45.2
Gohir.D05G129000 Gossypium hirsutum HOM05D004642 ORTHO05D005466 6.1e-71 273.1 520 43.3
Duzib235G0715 Durio zibethinus HOM05D004642 ORTHO05D005466 1.8e-70 271.6 755 45.2
Rhsim08G0221000 Rhododendron simsii HOM05D004642 ORTHO05D005466 3.0e-70 270.8 692 40.8
CiPaw.02G151400 Carya illinoinensis HOM05D004642 ORTHO05D005466 5.2e-70 270.0 721 48.5
Haze_16437 Corylus avellana HOM05D004642 ORTHO05D005466 3.4e-69 267.3 623 44.0
Dinv30514 Davidia involucrata HOM05D004642 ORTHO05D005466 2.4e-67 261.2 617 54.1
Oeu033484.1 Olea europaea HOM05D004642 ORTHO05D005466 2.4e-67 261.2 497 43.9
SGA_v2.0_scaffold4G01996 Striga asiatica HOM05D004642 ORTHO05D005466 2.4e-67 261.2 706 40.7
PSO782G0786 Papaver somniferum HOM05D004642 ORTHO05D005466 4.6e-66 256.9 700 39.9
Lsat_1_v5_gn_4_103580 Lactuca sativa HOM05D004642 ORTHO05D005466 7.8e-66 256.1 516 41.9
SalBow2G0306 Salvia bowleyana HOM05D004642 ORTHO05D005466 8.6e-65 252.7 511 41.7
Gohir.A09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 3.3e-64 250.8 558 34.8
Gorai.006G098800 Gossypium raimondii HOM05D004642 ORTHO05D005466 3.6e-63 247.3 521 35.1
Thecc.06G086400 Theobroma cacao HOM05D004642 ORTHO05D005466 4.7e-63 246.9 763 40.1
Duzib192G0922 Durio zibethinus HOM05D004642 ORTHO05D005466 1.4e-62 245.4 534 42.7
Gohir.D09G083200 Gossypium hirsutum HOM05D004642 ORTHO05D005466 1.2e-61 242.3 558 34.2
Glyma.12G087100 Glycine max HOM05D004642 ORTHO05D005466 1.5e-61 241.9 735 40.3
ClCG09G002170 Citrullus lanatus HOM05D004642 ORTHO05D005466 5.8e-61 240.0 516 44.6
Aa31LG8G3170 Aethionema arabicum HOM05D004642 ORTHO05D005466 2.2e-60 238.0 518 34.9
Lj3g0008789 Lotus japonicus HOM05D004642 ORTHO05D005466 6.4e-60 236.5 720 47.1
Lalb_Chr04g0262651 Lupinus albus HOM05D004642 ORTHO05D005466 6.4e-60 236.5 502 41.0
Ciclev10025273m.g Citrus clementina HOM05D004642 ORTHO05D005466 1.9e-59 235.0 568 51.8
Hma1.2p1_0323F.1_g125210 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 1.6e-58 231.9 429 47.3
PGR102G3321 Punica granatum HOM05D004642 ORTHO05D005466 2.1e-58 231.5 513 40.9
vmacro16950 Vaccinium macrocarpon HOM05D004642 ORTHO05D005466 2.7e-58 231.1 723 47.3
MD09G1213800 Malus domestica HOM05D004642 ORTHO05D005466 4.6e-58 230.3 693 44.0
CsaV3_7G033140 Cucumis sativus L. HOM05D004642 ORTHO05D005466 8.6e-57 226.1 715 46.0
Thhalv10020153m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 8.6e-57 226.1 674 38.0
Rhsim12G0197600 Rhododendron simsii HOM05D004642 ORTHO05D005466 2.1e-55 221.5 700 43.7
TWI75G1656 Tripterygium wilfordii HOM05D004642 ORTHO05D005466 6.2e-55 219.9 512 44.7
FvH4_6g31081 Fragaria vesca HOM05D004642 ORTHO05D005466 8.9e-54 216.1 522 46.4
FAN14G2337 Fragaria x ananassa HOM05D004642 ORTHO05D005466 8.9e-54 216.1 525 46.7
TAR626G0806 Trochodendron aralioides HOM05D004642 ORTHO05D005466 3.4e-53 214.2 714 37.7
Sed0016916 Sechium edule HOM05D004642 ORTHO05D005466 8.3e-52 209.5 714 43.0
GSVIVG01017115001 Vitis vinifera HOM05D004642 ORTHO05D005466 8.3e-52 209.5 527 39.8
Atru.chr1.3266 Acer truncatum HOM05D004642 ORTHO05D005466 1.9e-51 208.4 709 44.9
Lalb_Chr01g0012651 Lupinus albus HOM05D004642 ORTHO05D005466 1.6e-50 205.3 438 40.0
CSS0030593 Camellia sinensis var. sinensis HOM05D004642 ORTHO05D005466 3.5e-50 204.1 569 42.9
Glyma.11G187500 Glycine max HOM05D004642 ORTHO05D005466 4.6e-50 203.8 690 42.0
CiPaw.01G239700 Carya illinoinensis HOM05D004642 ORTHO05D005466 7.8e-50 203.0 515 39.6
Hund00614 Selenicereus undatus HOM05D004642 ORTHO05D005466 1.7e-49 201.8 678 45.6
Aqoxy7G01787 Aquilegia oxysepala HOM05D004642 ORTHO05D005466 5.1e-49 200.3 656 42.8
MELO3C024228.2 Cucumis melo HOM05D004642 ORTHO05D005466 5.1e-49 200.3 714 43.7
Manes.11G047800 Manihot esculenta HOM05D004642 ORTHO05D005466 6.6e-49 199.9 716 45.0
CARHR091130 Cardamine hirsuta HOM05D004642 ORTHO05D005466 1.1e-48 199.1 524 31.1
Ca_19383_v3 Cicer arietinum L. HOM05D004642 ORTHO05D005466 2.5e-48 198.0 664 44.1
AUR62016441 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.6e-47 195.3 658 33.6
Lalb_Chr14g0373421 Lupinus albus HOM05D004642 ORTHO05D005466 4.7e-47 193.7 670 34.3
SalBow2G2616 Salvia bowleyana HOM05D004642 ORTHO05D005466 8.1e-47 193.0 513 42.3
Eucgr.F03012 Eucalyptus grandis HOM05D004642 ORTHO05D005466 1.8e-46 191.8 428 42.5
COL.COLO4_30362 Corchorus olitorius HOM05D004642 ORTHO05D005466 4.0e-46 190.7 573 40.5
RcHm_v2.0_Chr2g0137781 Rosa chinensis HOM05D004642 ORTHO05D005466 2.0e-45 188.3 484 39.0
Lj5A61G44 Lonicera japonica HOM05D004642 ORTHO05D005466 7.6e-45 186.4 389 40.9
Dinv38051 Davidia involucrata HOM05D004642 ORTHO05D005466 1.7e-44 185.3 296 40.9
Nn8g39228 Nelumbo nucifera HOM05D004642 ORTHO05D005466 8.4e-44 183.0 676 41.7
Medtr4g054960 Medicago truncatula HOM05D004642 ORTHO05D005466 1.1e-43 182.6 388 42.8
BcaC09g48580 Brassica carinata HOM05D004642 ORTHO05D005466 1.9e-43 181.8 664 29.2
unitig_578.g16688 Utricularia gibba HOM05D004642 ORTHO05D005466 1.9e-43 181.8 759 32.4
unitig_744.g24335 Utricularia gibba HOM05D004642 ORTHO05D005466 2.4e-43 181.4 388 40.5
BraA03t13110Z Brassica rapa HOM05D004642 ORTHO05D005466 7.1e-43 179.9 514 35.8
Ah.01g021290 Amaranthus hybridus HOM05D004642 ORTHO05D005466 6.0e-42 176.8 704 35.5
AUR62011627 Chenopodium quinoa HOM05D004642 ORTHO05D005466 1.0e-41 176.0 690 34.5
Nn2g11790 Nelumbo nucifera HOM05D004642 ORTHO05D005466 5.1e-41 173.7 732 36.2
ECA248G0988 Erigeron canadensis HOM05D004642 ORTHO05D005466 6.6e-41 173.3 411 37.5
Sed0016127 Sechium edule HOM05D004642 ORTHO05D005466 6.6e-41 173.3 412 35.2
CANSAT56G1090 Cannabis sativa HOM05D004642 ORTHO05D005466 3.3e-40 171.0 492 46.7
VMungo1127G1134 Vigna mungo HOM05D004642 ORTHO05D005466 1.6e-39 168.7 522 39.5
A03p39630 Brassica napus HOM05D004642 ORTHO05D005466 3.6e-39 167.5 474 35.4
TAR636G0382 Trochodendron aralioides HOM05D004642 ORTHO05D005466 4.7e-39 167.2 275 44.4
BcaB04g18872 Brassica carinata HOM05D004642 ORTHO05D005466 1.4e-38 165.6 518 37.3
FAN09G1651 Fragaria x ananassa HOM05D004642 ORTHO05D005466 5.2e-38 163.7 717 45.6
Migut.D01034 Erythranthe guttata HOM05D004642 ORTHO05D005466 1.5e-37 162.2 720 37.2
Zm00001eb283760 Zea mays HOM05D004642 ORTHO05D005466 2.6e-37 161.4 658 36.3
Phvul.011G092000 Phaseolus vulgaris HOM05D004642 ORTHO05D005466 3.4e-37 161.0 485 38.6
THA.LOC104817998 Tarenaya hassleriana HOM05D004642 ORTHO05D005466 1.3e-36 159.1 417 39.1
BcaC01g03843 Brassica carinata HOM05D004642 ORTHO05D005466 1.7e-36 158.7 363 41.0
C03p48030 Brassica napus HOM05D004642 ORTHO05D005466 1.7e-36 158.7 363 41.0
BolC3t17082H Brassica oleracea HOM05D004642 ORTHO05D005466 1.7e-36 158.7 363 41.0
PSO063G4770 Papaver somniferum HOM05D004642 ORTHO05D005466 1.7e-36 158.7 702 34.5
arahy.Tifrunner.gnm1.ann1.D5EQ93 Arachis hypogaea HOM05D004642 ORTHO05D005466 2.9e-36 157.9 422 41.5
Psat7g189080 Pisum sativum HOM05D004642 ORTHO05D005466 3.8e-36 157.5 665 41.1
arahy.Tifrunner.gnm1.ann1.I53961 Arachis hypogaea HOM05D004642 ORTHO05D005466 1.4e-35 155.6 425 40.9
AT3G16000 Arabidopsis thaliana HOM05D004642 ORTHO05D005466 2.1e-34 151.8 510 37.3
Hma1.2p1_0323F.1_g125200 Hydrangea macrophylla HOM05D004642 ORTHO05D005466 2.3e-33 148.3 166 51.2
TPR.G15588 Trifolium pratense HOM05D004642 ORTHO05D005466 2.5e-32 144.8 411 43.8
ATR0037G055 Amborella trichopoda HOM05D004642 ORTHO05D005466 3.3e-32 144.4 716 40.5
MD09G1213500 Malus domestica HOM05D004642 ORTHO05D005466 7.3e-32 143.3 309 48.5
Sp3g14350 Schrenkiella parvula HOM05D004642 ORTHO05D005466 7.3e-32 143.3 520 35.6
arahy.Tifrunner.gnm1.ann1.CA04QB Arachis hypogaea HOM05D004642 ORTHO05D005466 4.8e-31 140.6 717 38.6
arahy.Tifrunner.gnm1.ann1.Z6VQ0W Arachis hypogaea HOM05D004642 ORTHO05D005466 4.8e-31 140.6 717 38.6
A05p33450 Brassica napus HOM05D004642 ORTHO05D005466 6.2e-31 140.2 477 31.0
SGA_v2.0_scaffold37G14818 Striga asiatica HOM05D004642 ORTHO05D005466 1.1e-30 139.4 686 44.9
Carub.0003s1573 Capsella rubella HOM05D004642 ORTHO05D005466 6.9e-30 136.7 522 36.2
AL3G28650 Arabidopsis lyrata HOM05D004642 ORTHO05D005466 1.2e-29 136.0 721 39.5
BraA05t22169Z Brassica rapa HOM05D004642 ORTHO05D005466 2.0e-29 135.2 485 36.5
BcaB06g25698 Brassica carinata HOM05D004642 ORTHO05D005466 2.9e-28 131.3 460 30.9
HanXRQChr16g0500971 Helianthus annuus HOM05D004642 ORTHO05D005466 2.9e-28 131.3 444 35.1
BolC5t33791H Brassica oleracea HOM05D004642 ORTHO05D005466 4.9e-28 130.6 462 36.4
HanXRQChr09g0275271 Helianthus annuus HOM05D004642 ORTHO05D005466 6.4e-28 130.2 408 41.4
CDE07G1358 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 8.4e-28 129.8 574 31.2
FAN05G5776 Fragaria x ananassa HOM05D004642 ORTHO05D005466 1.1e-27 129.4 719 44.5
MSTRG.9454 Avicennia marina HOM05D004642 ORTHO05D005466 1.4e-27 129.0 501 39.3
EL10Ac9g21996 Beta vulgaris HOM05D004642 ORTHO05D005466 5.4e-27 127.1 196 39.8
Sc21g0005100 Simmondsia chinensis HOM05D004642 ORTHO05D005466 1.2e-26 125.9 405 38.3
C05p50450 Brassica napus HOM05D004642 ORTHO05D005466 4.6e-26 124.0 380 41.3
HPP92_020045 Vanilla planifolia HOM05D004642 ORTHO05D005466 6.0e-26 123.6 433 26.1
C01p48370 Brassica napus HOM05D004642 ORTHO05D005466 3.0e-25 121.3 662 31.4
CDE06G0246 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 3.0e-25 121.3 409 25.4
FAN02G1410 Fragaria x ananassa HOM05D004642 ORTHO05D005466 3.9e-25 120.9 187 43.3
BcaB04g20887 Brassica carinata HOM05D004642 ORTHO05D005466 1.1e-22 112.8 679 26.2
BolC1t04795H Brassica oleracea HOM05D004642 ORTHO05D005466 3.1e-22 111.3 239 33.9
Hund06610 Selenicereus undatus HOM05D004642 ORTHO05D005466 3.1e-22 111.3 750 30.0
Os01g0180300 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 4.6e-18 97.4 497 33.0
MD09G1212900 Malus domestica HOM05D004642 ORTHO05D005466 1.1e-16 92.8 121 43.8
Os05g0180400 Oryza sativa ssp. japonica HOM05D004642 ORTHO05D005466 5.6e-16 90.5 404 26.7
HPP92_019980 Vanilla planifolia HOM05D004642 ORTHO05D005466 2.8e-15 88.2 354 32.2
Zm00001eb122200 Zea mays HOM05D004642 ORTHO05D005466 2.8e-15 88.2 375 30.7
Glyma.11G237600 Glycine max HOM05D004642 ORTHO05D005466 8.2e-15 86.7 380 40.5
SEGI_16798 Sequoiadendron giganteum HOM05D004642 ORTHO05D005466 1.1e-14 86.3 605 26.6
TAR624G0442 Trochodendron aralioides HOM05D004642 ORTHO05D005466 1.2e-13 82.8 115 44.3
A01p38100 Brassica napus HOM05D015723 ORTHO05D003275 6.0e-10 70.5 363 25.1
TAR624G1258 Trochodendron aralioides HOM05D004642 ORTHO05D005466 6.7e-09 67.0 113 38.9
Thhalv10023042m.g Eutrema salsugineum HOM05D004642 ORTHO05D005466 1.5e-08 65.9 239 23.4
CDE07G0399 Ceratophyllum demersum HOM05D004642 ORTHO05D005466 6.3e-07 60.5 574 19.5
MD09G1213300 Malus domestica HOM05D004642 ORTHO05D005466 6.3e-07 60.5 110 40.0


User provided reference genes

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