Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g120155.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 6.4e-40 166.8 74 100.0
Sopen03g039030 Solanum pennellii HOM05D007609 ORTHO05D009539 5.2e-34 147.1 78 89.7
PGSC0003DMG400005605 Solanum tuberosum HOM05D007609 ORTHO05D009539 2.1e-30 135.2 78 82.1
Nitab4.5_0005851g0050 Nicotiana tabacum HOM05D007609 ORTHO05D009539 1.9e-20 102.1 73 65.8
PGSC0003DMG400005604 Solanum tuberosum HOM05D007609 ORTHO05D009539 2.9e-16 88.2 79 58.2
Solyc03g120160.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 4.3e-12 74.3 78 51.3
Nitab4.5_0000351g0200 Nicotiana tabacum HOM05D007609 ORTHO05D009539 7.4e-12 73.6 79 49.4
Sopen03g039040 Solanum pennellii HOM05D007609 ORTHO05D009539 9.6e-12 73.2 77 51.9
Dinv38045 Davidia involucrata HOM05D007609 ORTHO05D009539 1.3e-11 72.8 86 48.8
Peaxi162Scf00015g00416 Petunia axillaris HOM05D007609 ORTHO05D009539 1.6e-11 72.4 80 42.5
PGSC0003DMG400016536 Solanum tuberosum HOM05D007609 ORTHO05D009539 2.8e-11 71.6 70 51.4
Migut.D01028 Erythranthe guttata HOM05D007609 ORTHO05D009539 1.1e-10 69.7 86 40.7
Peaxi162Scf00207g00095 Petunia axillaris HOM05D007609 ORTHO05D009539 2.4e-10 68.6 81 44.4
Solyc06g066700.1 Solanum lycopersicum HOM05D007609 ORTHO05D009539 3.1e-10 68.2 43 72.1
Manes.03G019500 Manihot esculenta HOM05D007609 ORTHO05D009539 1.5e-09 65.9 78 43.6
TAR383G0714 Trochodendron aralioides HOM05D007609 ORTHO05D009539 2.0e-09 65.5 42 69.0
Rhsim08G0221700 Rhododendron simsii HOM05D007609 ORTHO05D009539 3.4e-09 64.7 44 61.4
Ciclev10010038m.g Citrus clementina HOM05D007609 ORTHO05D009539 4.5e-09 64.3 40 65.0
Lsat_1_v5_gn_4_103641 Lactuca sativa HOM05D007609 ORTHO05D009539 4.5e-09 64.3 33 75.8
QL05p023464 Quercus lobata HOM05D007609 ORTHO05D009539 5.8e-09 63.9 41 63.4
QL10p054851 Quercus lobata HOM05D007609 ORTHO05D009539 7.6e-09 63.5 41 61.0
Sopen06g024990 Solanum pennellii HOM05D007609 ORTHO05D009539 7.6e-09 63.5 43 67.4
DCAR_023052 Daucus carota HOM05D007609 ORTHO05D009539 1.7e-08 62.4 74 44.6
Nitab4.5_0003351g0110 Nicotiana tabacum HOM05D007609 ORTHO05D009539 2.2e-08 62.0 79 43.0
AUR62016446 Chenopodium quinoa HOM05D007609 ORTHO05D009539 2.9e-08 61.6 81 42.0
Thecc.09G111700 Theobroma cacao HOM05D007609 ORTHO05D009539 4.9e-08 60.8 44 61.4
Cpa.g.sc451.1 Carica papaya HOM05D007609 ORTHO05D009539 6.5e-08 60.5 43 60.5
Aqoxy7G01699 Aquilegia oxysepala HOM05D007609 ORTHO05D009539 8.4e-08 60.1 40 60.0
CSS0012617 Camellia sinensis var. sinensis HOM05D007609 ORTHO05D009539 8.4e-08 60.1 38 65.8
Gohir.A06G061700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 8.4e-08 60.1 43 62.8
Hma1.2p1_0092F.1_g046650 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 8.4e-08 60.1 43 58.1
Eucgr.C03849 Eucalyptus grandis HOM05D007609 ORTHO05D009539 1.1e-07 59.7 36 66.7
Gohir.A07G006801 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.1e-07 59.7 41 63.4
ECA232G3029 Erigeron canadensis HOM05D007609 ORTHO05D009539 1.4e-07 59.3 30 70.0
Gohir.D07G005100 Gossypium hirsutum HOM05D007609 ORTHO05D009539 1.4e-07 59.3 37 67.6
Gorai.001G004700 Gossypium raimondii HOM05D007609 ORTHO05D009539 1.4e-07 59.3 37 67.6
vmacro18908 Vaccinium macrocarpon HOM05D007609 ORTHO05D009539 1.4e-07 59.3 42 59.5
Ah.14g081870 Amaranthus hybridus HOM05D007609 ORTHO05D009539 2.5e-07 58.5 44 50.0
Gohir.D06G060000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.5e-07 58.5 36 66.7
Gorai.010G069800 Gossypium raimondii HOM05D007609 ORTHO05D009539 2.5e-07 58.5 36 66.7
Sabra18G0066900 Salix brachista HOM05D007609 ORTHO05D009539 2.5e-07 58.5 44 54.5
Manes.16G116800 Manihot esculenta HOM05D007609 ORTHO05D009539 3.2e-07 58.2 43 55.8
MELO3C024233.2 Cucumis melo HOM05D010933 ORTHO05D013136 4.2e-07 57.8 30 66.7
Hma1.2p1_0018F.1_g013450 Hydrangea macrophylla HOM05D007609 ORTHO05D009539 4.2e-07 57.8 40 60.0
Atru.chr7.1339 Acer truncatum HOM05D007609 ORTHO05D009539 5.5e-07 57.4 32 78.1
Sc18g0001160 Simmondsia chinensis HOM05D007609 ORTHO05D009539 7.1e-07 57.0 35 68.6
unitig_899.g14776 Utricularia gibba HOM05D007609 ORTHO05D009539 9.3e-07 56.6 52 48.1
CsaV3_7G033200 Cucumis sativus L. HOM05D010933 ORTHO05D013136 1.2e-06 56.2 28 67.9
DCAR_028717 Daucus carota HOM05D007609 ORTHO05D009539 1.2e-06 56.2 27 74.1
Lsat_1_v5_gn_5_101501 Lactuca sativa HOM05D007609 ORTHO05D009539 1.2e-06 56.2 41 58.5
Nn2g11764 Nelumbo nucifera HOM05D007609 ORTHO05D009539 1.2e-06 56.2 34 64.7
Potri.006G159300 Populus trichocarpa HOM05D007609 ORTHO05D009539 1.2e-06 56.2 43 55.8
Sed0016972 Sechium edule HOM05D007609 ORTHO05D009539 1.2e-06 56.2 34 64.7
Gohir.A08G241000 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.7e-06 55.1 33 66.7
Gohir.D08G261700 Gossypium hirsutum HOM05D007609 ORTHO05D009539 2.7e-06 55.1 33 66.7
Gorai.004G279800 Gossypium raimondii HOM05D007609 ORTHO05D009539 2.7e-06 55.1 33 66.7
Eucgr.F03018 Eucalyptus grandis HOM05D007609 ORTHO05D009539 4.6e-06 54.3 81 35.8
Potri.018G078900 Populus trichocarpa HOM05D007609 ORTHO05D009539 4.6e-06 54.3 39 59.0
Sp1g38930 Schrenkiella parvula HOM05D010933 ORTHO05D013136 4.6e-06 54.3 35 60.0
Sed0020512 Sechium edule HOM05D007609 ORTHO05D009539 6.0e-06 53.9 35 60.0
TAR626G0143 Trochodendron aralioides HOM05D007609 ORTHO05D025968 6.0e-06 53.9 32 65.6
AUR62021516 Chenopodium quinoa HOM05D007609 ORTHO05D009539 7.9e-06 53.5 23 82.6
Migut.I00869 Erythranthe guttata HOM05D007609 ORTHO05D009539 7.9e-06 53.5 26 69.2
Glyma.07G087100 Glycine max HOM05D007609 ORTHO05D009539 7.9e-06 53.5 39 56.4


User provided reference genes

Program Settings