Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g120070.4 Solanum lycopersicum HOM05D000880 ORTHO05D009684 4.7e-138 495.7 337 100.0
Sopen03g038940 Solanum pennellii HOM05D000880 ORTHO05D009684 3.0e-132 476.5 337 97.0
PGSC0003DMG400005692 Solanum tuberosum HOM05D000880 ORTHO05D009684 1.8e-129 467.2 337 95.8
Nitab4.5_0000502g0180 Nicotiana tabacum HOM05D000880 ORTHO05D009684 2.4e-97 360.5 315 84.8
Peaxi162Scf00288g01016 Petunia axillaris HOM05D000880 ORTHO05D009684 4.2e-86 323.2 316 82.3
Nitab4.5_0001956g0020 Nicotiana tabacum HOM05D000880 ORTHO05D009684 5.5e-70 269.6 303 77.9
Dinv15656 Davidia involucrata HOM05D000880 ORTHO05D009684 5.5e-54 216.5 324 60.5
Cc08_g06370 Coffea canephora HOM05D000880 ORTHO05D009684 4.2e-46 190.3 321 60.1
Migut.E01433 Erythranthe guttata HOM05D000880 ORTHO05D009684 7.2e-46 189.5 335 58.2
Rhsim04G0217100 Rhododendron simsii HOM05D000880 ORTHO05D009684 1.3e-42 178.7 331 57.4
Actinidia06447 Actinidia chinensis HOM05D000880 ORTHO05D009684 5.4e-41 173.3 322 56.5
vmacro08195 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 5.4e-41 173.3 324 58.3
Cfa013251 Carpinus fangiana HOM05D000880 ORTHO05D008158 7.7e-40 169.5 314 58.6
Cpa.g.sc10.206 Carica papaya HOM05D000880 ORTHO05D009684 4.7e-37 160.2 319 56.1
Atru.chr7.2671 Acer truncatum HOM05D000880 ORTHO05D009684 4.0e-36 157.1 331 50.8
CSS0007644 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 3.4e-35 154.1 296 58.8
SGA_v2.0_scaffold121G33022 Striga asiatica HOM05D000880 ORTHO05D009684 4.4e-35 153.7 326 45.7
Oeu040613.1 Olea europaea HOM05D000880 ORTHO05D009684 7.5e-35 152.9 166 51.8
Lj4A910T18 Lonicera japonica HOM05D000880 ORTHO05D009684 9.8e-35 152.5 312 57.7
Lj6C69T3 Lonicera japonica HOM05D000880 ORTHO05D009684 9.8e-35 152.5 305 57.4
CiPaw.07G214800 Carya illinoinensis HOM05D000880 ORTHO05D009684 1.7e-34 151.8 318 57.2
FAN24G3119 Fragaria x ananassa HOM05D000880 ORTHO05D009684 3.1e-33 147.5 337 53.1
QL12p024656 Quercus lobata HOM05D000880 ORTHO05D009684 3.5e-32 144.1 298 58.7
FAN27G3148 Fragaria x ananassa HOM05D000880 ORTHO05D009684 2.9e-31 141.0 272 60.3
FAN20G2124 Fragaria x ananassa HOM05D000880 ORTHO05D009684 3.8e-31 140.6 330 54.8
CsaV3_2G031530 Cucumis sativus L. HOM05D000880 ORTHO05D009684 5.0e-31 140.2 273 59.3
RcHm_v2.0_Chr6g0312241 Rosa chinensis HOM05D000880 ORTHO05D009684 6.6e-31 139.8 333 53.2
MD08G1133900 Malus domestica HOM05D000880 ORTHO05D009684 1.1e-30 139.0 300 57.0
Potri.018G004400 Populus trichocarpa HOM05D000880 ORTHO05D009684 4.3e-30 137.1 303 54.5
FvH4_2g30660 Fragaria vesca HOM05D000880 ORTHO05D009684 1.2e-29 135.6 293 57.0
Prupe.1G462500 Prunus persica HOM05D000880 ORTHO05D009684 4.0e-28 130.6 305 55.1
arahy.Tifrunner.gnm1.ann1.D3X7TW Arachis hypogaea HOM05D005666 ORTHO05D007183 6.8e-28 129.8 321 53.3
Phvul.011G207000 Phaseolus vulgaris HOM05D000880 ORTHO05D009684 2.6e-27 127.9 274 58.4
arahy.Tifrunner.gnm1.ann1.CHY0RW Arachis hypogaea HOM05D000880 ORTHO05D009684 3.4e-27 127.5 321 53.3
Glyma.13G197400 Glycine max HOM05D000880 ORTHO05D009684 4.4e-27 127.1 261 53.3
Aqoxy5G01876 Aquilegia oxysepala HOM05D000880 ORTHO05D009684 7.5e-27 126.3 320 54.1
TAR626G1204 Trochodendron aralioides HOM05D000880 ORTHO05D009684 1.7e-26 125.2 311 52.7
Manes.07G088100 Manihot esculenta HOM05D000880 ORTHO05D009684 6.4e-26 123.2 303 53.8
Haze_21694 Corylus avellana HOM05D000880 ORTHO05D009684 1.1e-25 122.5 262 60.3
SalBow8G2909 Salvia bowleyana HOM05D004918 ORTHO05D005706 1.8e-25 121.7 303 52.5
VMungo1127G1257 Vigna mungo HOM05D000880 ORTHO05D009684 4.1e-25 120.6 260 58.8
vmacro08192 Vaccinium macrocarpon HOM05D000880 ORTHO05D009684 7.0e-25 119.8 309 50.2
Lalb_Chr03g0032741 Lupinus albus HOM05D000880 ORTHO05D009684 9.2e-25 119.4 303 53.1
CANSAT78G1387 Cannabis sativa HOM05D000880 ORTHO05D009684 1.6e-24 118.6 294 56.1
Nn8g39798 Nelumbo nucifera HOM05D000880 ORTHO05D009684 4.6e-24 117.1 315 52.1
Haze_10332 Corylus avellana HOM05D000880 ORTHO05D009684 6.6e-23 113.2 215 65.6
GSVIVG01003996001 Vitis vinifera HOM05D000880 ORTHO05D009684 1.1e-22 112.5 214 65.4
Aa31LG10G9680 Aethionema arabicum HOM05D000880 ORTHO05D009684 1.2e-21 109.0 261 56.7
Hund04480 Selenicereus undatus HOM05D000880 ORTHO05D009684 1.2e-21 109.0 251 59.0
Sed0004667 Sechium edule HOM05D000880 ORTHO05D009684 6.2e-21 106.7 300 48.0
Sabra18G0010100 Salix brachista HOM05D000880 ORTHO05D009684 3.1e-20 104.4 296 54.4
Sabra18G0001200 Salix brachista HOM05D000880 ORTHO05D009684 4.0e-20 104.0 294 54.8
Aa31LG10G9610 Aethionema arabicum HOM05D000880 ORTHO05D009684 6.8e-20 103.2 320 45.0
Ca_12883_v3 Cicer arietinum L. HOM05D000880 ORTHO05D009684 6.8e-20 103.2 267 49.4
MELO3C011202.2 Cucumis melo HOM05D000880 ORTHO05D009684 6.8e-20 103.2 238 61.3
Glyma.15G236000 Glycine max HOM05D000880 ORTHO05D009684 2.9e-18 97.8 233 51.1
Lsat_1_v5_gn_5_33201 Lactuca sativa HOM05D000880 ORTHO05D009684 3.7e-18 97.4 335 42.7
Medtr1g010020 Medicago truncatula HOM05D000880 ORTHO05D009684 1.1e-17 95.9 279 52.7
Ciclev10007859m.g Citrus clementina HOM05D000880 ORTHO05D009684 1.9e-17 95.1 288 55.9
ECA236G3570 Erigeron canadensis HOM05D000705 ORTHO05D002970 2.4e-17 94.7 256 51.2
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 5.4e-17 93.6 313 50.8
Lj3g0007027 Lotus japonicus HOM05D000880 ORTHO05D009684 2.7e-16 91.3 306 38.2
Psat6g031840 Pisum sativum HOM05D000880 ORTHO05D009684 4.6e-16 90.5 294 50.3
PGR044G0315 Punica granatum HOM05D000880 ORTHO05D009684 3.9e-15 87.4 297 50.2
Sp2g22620 Schrenkiella parvula HOM05D000880 ORTHO05D009684 3.9e-15 87.4 291 51.9
ECA232G0576 Erigeron canadensis HOM05D000880 ORTHO05D009684 5.0e-15 87.0 256 50.0
Thecc.09G004700 Theobroma cacao HOM05D000880 ORTHO05D009684 8.6e-15 86.3 165 36.4
HanXRQChr07g0202221 Helianthus annuus HOM05D000880 ORTHO05D009684 1.1e-14 85.9 184 35.9
TPR.G12115 Trifolium pratense HOM05D000880 ORTHO05D009684 1.9e-14 85.1 293 46.4
Ah.02g121750 Amaranthus hybridus HOM05D000880 ORTHO05D009684 1.2e-13 82.4 234 58.5
DCAR_017077 Daucus carota HOM05D000880 ORTHO05D009684 3.6e-13 80.9 87 47.1
Thhalv10003880m.g Eutrema salsugineum HOM05D000880 ORTHO05D009684 4.7e-13 80.5 288 49.7
MSTRG.13951 Avicennia marina HOM05D000880 ORTHO05D009684 2.3e-12 78.2 72 50.0
A06p35600 Brassica napus HOM05D000880 ORTHO05D009684 2.3e-12 78.2 293 50.9
CiPaw.15G081300 Carya illinoinensis HOM05D000880 ORTHO05D009684 4.0e-12 77.4 80 47.5
BraA06t26485Z Brassica rapa HOM05D000880 ORTHO05D009684 1.2e-11 75.9 292 50.3
CARHR188620 Cardamine hirsuta HOM05D000880 ORTHO05D009684 3.4e-11 74.3 159 34.0
PSO017G1147 Papaver somniferum HOM05D000880 ORTHO05D001950 3.4e-11 74.3 173 32.4
Carub.0006s2268 Capsella rubella HOM05D000880 ORTHO05D009684 4.4e-11 73.9 292 50.0
BolC7t44823H Brassica oleracea HOM05D000880 ORTHO05D009684 9.8e-11 72.8 293 49.5
C07p42940 Brassica napus HOM05D000880 ORTHO05D009684 1.3e-10 72.4 298 48.7
Sc07g0001710 Simmondsia chinensis HOM05D000880 ORTHO05D009684 1.3e-10 72.4 103 39.8
MD15G1110300 Malus domestica HOM05D000880 ORTHO05D009684 6.4e-10 70.1 192 60.9
EL10Ac6g15284 Beta vulgaris HOM05D000880 ORTHO05D009684 8.3e-10 69.7 229 59.4
MBI13_g01685_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D001950 1.4e-09 68.9 178 32.0
Eucgr.H00073 Eucalyptus grandis HOM05D000880 ORTHO05D009684 2.4e-09 68.2 319 48.9
AT5G24830 Arabidopsis thaliana HOM05D000880 ORTHO05D009684 9.2e-09 66.2 287 50.5
AUR62003593 Chenopodium quinoa HOM05D000880 ORTHO05D009684 1.2e-08 65.9 95 40.0
AUR62017906 Chenopodium quinoa HOM05D000880 ORTHO05D009684 1.2e-08 65.9 95 40.0
AL6G36470 Arabidopsis lyrata HOM05D000880 ORTHO05D009684 5.1e-07 60.5 290 49.3
CSS0003109 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D009684 1.1e-06 59.3 71 45.1
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 4.3e-06 57.4 113 31.0


User provided reference genes

Program Settings