Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 0.0e+00 1577.4 814 100.0
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 0.0e+00 1561.6 814 98.9
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 0.0e+00 1479.2 815 94.4
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 0.0e+00 1261.9 840 81.1
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 0.0e+00 1233.4 834 79.5
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 0.0e+00 1203.3 816 79.8
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 6.2e-253 877.9 831 59.6
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 3.9e-247 858.6 836 58.3
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 7.3e-238 827.8 853 56.7
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 1.4e-233 813.5 825 57.8
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 4.2e-233 812.0 825 57.7
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 2.7e-232 809.3 834 55.5
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 3.5e-232 808.9 840 56.0
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 8.7e-231 804.3 824 56.7
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 2.5e-230 802.7 842 55.5
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 3.6e-229 798.9 827 55.6
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 3.1e-228 795.8 839 54.4
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 4.5e-227 792.0 828 55.9
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 1.3e-226 790.4 825 55.6
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 2.2e-226 789.6 823 55.3
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 1.1e-225 787.3 824 55.3
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 1.1e-222 777.3 824 54.7
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.5e-222 776.2 825 54.5
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 3.3e-222 775.8 902 52.3
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 9.6e-222 774.2 826 55.0
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 9.6e-222 774.2 818 54.9
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 2.8e-221 772.7 818 54.8
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 8.1e-221 771.2 809 55.9
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 4.0e-220 768.8 902 52.0
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 1.5e-219 766.9 826 54.2
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 7.6e-219 764.6 823 53.9
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.9e-218 762.7 824 53.8
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 2.5e-217 759.6 823 53.3
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 4.2e-217 758.8 860 52.1
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 4.6e-216 755.4 860 52.0
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 7.9e-216 754.6 827 54.2
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 7.9e-216 754.6 828 53.3
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 1.3e-215 753.8 837 53.2
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 3.9e-215 752.3 823 53.2
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 3.9e-215 752.3 834 52.6
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 5.1e-215 751.9 791 54.6
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 8.7e-215 751.1 439 85.9
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.5e-214 750.4 795 55.0
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 1.5e-214 750.4 825 54.2
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.3e-213 747.3 832 53.6
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 2.1e-213 746.5 823 52.9
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 1.5e-211 740.3 818 52.2
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 2.6e-211 739.6 819 52.0
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.3e-210 737.3 822 51.2
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 2.9e-210 736.1 817 51.7
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 6.5e-210 734.9 839 51.5
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 3.2e-209 732.6 817 53.5
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 1.8e-207 726.9 765 54.2
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 8.7e-207 724.5 834 51.8
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.9e-206 723.4 822 51.9
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.5e-206 723.0 813 52.2
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 5.7e-206 721.8 834 52.4
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 3.7e-205 719.2 801 52.8
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 9.1e-204 714.5 811 52.3
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 3.4e-203 712.6 822 51.5
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.0e-202 711.1 840 50.8
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 1.4e-201 707.2 832 51.2
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 6.1e-200 701.8 825 50.3
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 6.1e-200 701.8 827 51.1
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 6.7e-199 698.4 824 50.6
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 9.7e-198 694.5 822 51.6
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 3.1e-196 689.5 685 55.8
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 1.2e-195 687.6 823 49.9
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 2.6e-195 686.4 825 50.4
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 1.1e-193 681.0 818 50.5
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 7.9e-192 674.9 820 48.8
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 3.0e-191 672.9 783 51.0
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.1e-190 671.0 830 48.3
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 2.0e-190 670.2 821 49.7
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 2.6e-190 669.8 825 48.5
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 4.4e-190 669.1 822 50.1
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 2.2e-189 666.8 695 54.0
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 9.1e-188 661.4 877 47.5
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 7.7e-187 658.3 826 48.7
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 1.7e-186 657.1 803 48.6
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 1.9e-185 653.7 815 48.8
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 2.5e-185 653.3 822 49.5
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 3.2e-185 652.9 739 53.0
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 1.4e-183 647.5 819 49.1
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 1.8e-183 647.1 822 49.8
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 1.8e-183 647.1 818 49.0
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 5.2e-183 645.6 796 49.7
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 5.2e-183 645.6 816 48.5
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 1.2e-182 644.4 820 48.2
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 1.7e-181 640.6 821 47.7
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 8.2e-181 638.3 639 55.6
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 1.1e-180 637.9 820 48.5
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 1.1e-180 637.9 820 48.2
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 1.8e-180 637.1 819 47.6
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 5.3e-180 635.6 821 49.1
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 1.6e-179 634.0 595 58.0
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.3e-178 630.9 820 47.7
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.1e-177 627.9 818 47.1
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 3.2e-177 626.3 820 48.3
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 4.2e-177 625.9 822 49.1
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 9.4e-177 624.8 821 48.2
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.2e-176 624.4 788 49.6
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 4.0e-175 619.4 821 48.0
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.2e-174 617.8 822 47.7
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 2.6e-174 616.7 820 47.9
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 2.8e-173 613.2 646 53.9
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 3.1e-172 609.8 780 48.2
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 5.0e-170 602.4 788 48.0
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 4.2e-169 599.4 820 47.3
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 2.4e-164 583.6 815 44.4
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 4.1e-164 582.8 777 46.5
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.9e-161 573.9 683 49.2
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 8.0e-160 568.5 863 42.8
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 3.3e-153 546.6 788 45.4
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 9.2e-148 528.5 878 39.5
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 3.0e-146 523.5 858 41.1
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 3.6e-144 516.5 631 47.5
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 9.2e-140 501.9 454 59.0
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 7.8e-131 472.2 436 53.7
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 2.1e-128 464.2 816 40.0
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 3.1e-119 433.7 423 63.6
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 4.3e-113 413.3 675 40.0
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 5.3e-103 379.8 466 45.9
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.9e-100 371.3 787 35.6
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.1e-95 355.5 315 58.7
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.9e-91 339.3 482 42.3
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 1.8e-90 338.2 503 39.6
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.3e-89 334.0 604 38.4
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 6.3e-88 329.7 480 40.2
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.3e-80 305.4 467 41.5
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.7e-80 303.9 434 39.9
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.4e-78 297.4 484 37.6
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.4e-78 297.4 484 37.6
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.0e-77 293.5 534 36.3
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 7.2e-76 289.7 499 38.7
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 5.2e-74 283.5 555 40.0
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 2.7e-67 261.2 381 45.1
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.6e-54 218.8 196 51.0
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 1.2e-51 209.1 688 32.4
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 2.5e-44 184.9 202 54.5
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 3.3e-36 157.9 439 35.3
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 2.0e-25 122.1 92 58.7
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 2.4e-18 98.6 71 64.8
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 1.6e-14 85.9 107 43.0
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.1e-12 79.7 208 30.3
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 1.2e-11 76.3 83 53.0
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 9.0e-10 70.1 53 56.6
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 3.4e-09 68.2 66 47.0
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 3.4e-09 68.2 66 47.0
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 7.6e-09 67.0 69 42.0
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 1.3e-08 66.2 49 63.3
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 5.4e-07 60.8 69 39.1
Cre17.g717400 Chlamydomonas reinhardtii HOM05D004705 ORTHO05D005595 3.5e-06 58.2 92 37.0
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 6.0e-06 57.4 64 48.4


User provided reference genes

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