Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g119840.3 Solanum lycopersicum HOM05D005660 ORTHO05D006954 6.6e-114 414.1 211 100.0
CAN.G438.109 Capsicum annuum HOM05D005660 ORTHO05D006954 4.4e-94 348.2 215 84.2
Peaxi162Scf00015g00624 Petunia axillaris HOM05D005660 ORTHO05D006954 1.2e-83 313.5 212 75.5
Nitab4.5_0003716g0100 Nicotiana tabacum HOM05D005660 ORTHO05D006954 1.5e-81 306.6 212 75.9
Cc04_g07620 Coffea canephora HOM05D005660 ORTHO05D006954 1.5e-73 280.0 205 68.8
Lj5C141T17 Lonicera japonica HOM05D005660 ORTHO05D006954 3.3e-73 278.9 205 68.3
Nitab4.5_0001432g0090 Nicotiana tabacum HOM05D005660 ORTHO05D006954 4.3e-73 278.5 216 68.5
PGSC0003DMG400004073 Solanum tuberosum HOM05D005660 ORTHO05D006954 3.6e-72 275.4 205 69.8
Nitab4.5_0010134g0010 Nicotiana tabacum HOM05D005660 ORTHO05D006954 5.3e-71 271.6 209 68.9
Dinv36893 Davidia involucrata HOM05D005660 ORTHO05D006954 7.6e-70 267.7 205 65.9
Sopen06g026530 Solanum pennellii HOM05D005660 ORTHO05D006954 6.4e-69 264.6 203 67.5
Oeu016162.1 Olea europaea HOM05D005660 ORTHO05D006954 6.0e-67 258.1 199 67.3
Lsat_1_v5_gn_1_15860 Lactuca sativa HOM05D005660 ORTHO05D006954 1.0e-66 257.3 211 63.5
QL10p023157 Quercus lobata HOM05D005660 ORTHO05D006954 1.3e-66 256.9 208 63.0
Atru.chr9.733 Acer truncatum HOM05D005660 ORTHO05D006954 3.0e-66 255.8 212 62.3
CSS0007003 Camellia sinensis var. sinensis HOM05D005660 ORTHO05D006954 3.0e-66 255.8 207 64.3
Nitab4.5_0000410g0170 Nicotiana tabacum HOM05D005660 ORTHO05D006954 3.9e-66 255.4 175 77.1
Prupe.5G216100 Prunus persica HOM05D005660 ORTHO05D006954 1.5e-65 253.4 212 61.8
CANSAT80G1116 Cannabis sativa HOM05D005660 ORTHO05D006954 1.9e-65 253.1 211 61.6
CiPaw.16G083200 Carya illinoinensis HOM05D005660 ORTHO05D006954 2.5e-65 252.7 212 61.8
HanXRQChr02g0042751 Helianthus annuus HOM05D005660 ORTHO05D006954 2.5e-65 252.7 211 63.0
ECA247G3454 Erigeron canadensis HOM05D005660 ORTHO05D006954 4.3e-65 251.9 211 63.0
Duzib068G0469 Durio zibethinus HOM05D005660 ORTHO05D006954 2.1e-64 249.6 206 62.1
Sed0025711 Sechium edule HOM05D005660 ORTHO05D006954 8.1e-64 247.7 208 61.5
COL.COLO4_38430 Corchorus olitorius HOM05D005660 ORTHO05D006954 1.1e-63 247.3 205 60.5
MD06G1209900 Malus domestica HOM05D005660 ORTHO05D006954 1.4e-63 246.9 222 58.1
Ciclev10022237m.g Citrus clementina HOM05D005660 ORTHO05D006954 1.8e-63 246.5 207 60.4
PGR083G1435 Punica granatum HOM05D005660 ORTHO05D006954 3.1e-63 245.7 215 60.0
Thecc.03G027100 Theobroma cacao HOM05D005660 ORTHO05D006954 3.1e-63 245.7 208 61.1
SalBow2G0395 Salvia bowleyana HOM05D005660 ORTHO05D006954 4.0e-63 245.4 203 62.1
Actinidia39803 Actinidia chinensis HOM05D005660 ORTHO05D006954 5.3e-63 245.0 206 60.7
FvH4_5g12810 Fragaria vesca HOM05D005660 ORTHO05D006954 5.3e-63 245.0 215 57.7
FAN18G2100 Fragaria x ananassa HOM05D005660 ORTHO05D006954 5.3e-63 245.0 215 57.7
CsaV3_1G006460 Cucumis sativus L. HOM05D005660 ORTHO05D006954 1.2e-62 243.8 209 59.8
FAN08G1036 Fragaria x ananassa HOM05D005660 ORTHO05D006954 3.4e-62 242.3 215 57.2
FAN18G0270 Fragaria x ananassa HOM05D005660 ORTHO05D006954 4.5e-62 241.9 210 57.6
HanXRQChr04g0105941 Helianthus annuus HOM05D005660 ORTHO05D006954 5.8e-62 241.5 206 61.2
RcHm_v2.0_Chr7g0184421 Rosa chinensis HOM05D005660 ORTHO05D006954 5.8e-62 241.5 211 57.3
Migut.K00381 Erythranthe guttata HOM05D005660 ORTHO05D006954 1.3e-61 240.4 202 61.4
Peaxi162Scf00013g00938 Petunia axillaris HOM05D005660 ORTHO05D006954 1.3e-61 240.4 211 62.6
Lj1g0000047 Lotus japonicus HOM05D005660 ORTHO05D006954 3.8e-61 238.8 207 58.0
Gohir.A12G265100 Gossypium hirsutum HOM05D005660 ORTHO05D006954 4.9e-61 238.4 208 59.6
MD14G1220800 Malus domestica HOM05D005660 ORTHO05D006954 4.9e-61 238.4 218 56.4
MELO3C002072.2 Cucumis melo HOM05D005660 ORTHO05D006954 6.4e-61 238.0 214 59.3
Glyma.05G014100 Glycine max HOM05D005660 ORTHO05D006954 2.4e-60 236.1 205 59.0
MSTRG.9561 Avicennia marina HOM05D005660 ORTHO05D006954 3.2e-60 235.7 197 61.9
Glyma.06G209600 Glycine max HOM05D005660 ORTHO05D006954 4.2e-60 235.3 207 59.4
Potri.012G059100 Populus trichocarpa HOM05D005660 ORTHO05D006954 4.2e-60 235.3 211 60.2
Glyma.04G145600 Glycine max HOM05D005660 ORTHO05D006954 5.4e-60 235.0 207 58.9
Gohir.D12G265300 Gossypium hirsutum HOM05D005660 ORTHO05D006954 5.4e-60 235.0 208 58.2
VMungo1309G1625 Vigna mungo HOM05D005660 ORTHO05D006954 5.4e-60 235.0 207 58.0
arahy.Tifrunner.gnm1.ann1.18T8HP Arachis hypogaea HOM05D005660 ORTHO05D006954 6.0e-59 231.5 212 57.1
Lalb_Chr07g0178541 Lupinus albus HOM05D005660 ORTHO05D006954 6.0e-59 231.5 205 57.1
arahy.Tifrunner.gnm1.ann1.IPQJ9D Arachis hypogaea HOM05D005660 ORTHO05D006954 7.9e-59 231.1 208 55.3
CiPaw.15G125200 Carya illinoinensis HOM05D005660 ORTHO05D006954 1.0e-58 230.7 216 60.2
Manes.01G021600 Manihot esculenta HOM05D005660 ORTHO05D006954 1.3e-58 230.3 207 58.0
Eucgr.B00688 Eucalyptus grandis HOM05D005660 ORTHO05D006954 2.3e-58 229.6 207 55.6
Lj4g0015648 Lotus japonicus HOM05D005660 ORTHO05D006954 3.9e-58 228.8 205 56.1
Glyma.17G122400 Glycine max HOM05D005660 ORTHO05D006954 8.7e-58 227.6 205 56.6
Gorai.008G285000 Gossypium raimondii HOM05D005660 ORTHO05D006954 8.7e-58 227.6 236 53.4
Oeu027136.1 Olea europaea HOM05D005660 ORTHO05D006954 1.5e-57 226.9 173 68.2
TWI81G0064 Tripterygium wilfordii HOM05D005660 ORTHO05D006954 1.5e-57 226.9 207 55.6
Aqoxy3G03878 Aquilegia oxysepala HOM05D005660 ORTHO05D006954 3.3e-57 225.7 208 58.2
Manes.05G117900 Manihot esculenta HOM05D005660 ORTHO05D006954 9.6e-57 224.2 207 57.5
Medtr2g055760 Medicago truncatula HOM05D005660 ORTHO05D006954 1.3e-56 223.8 213 55.9
Hund09993 Selenicereus undatus HOM05D005660 ORTHO05D006954 1.6e-56 223.4 221 55.7
Phvul.003G178300 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 2.8e-56 222.6 216 54.2
arahy.Tifrunner.gnm1.ann1.YK8N2P Arachis hypogaea HOM05D005660 ORTHO05D006954 4.8e-56 221.9 208 53.8
Sed0025679 Sechium edule HOM05D005660 ORTHO05D006954 6.2e-56 221.5 207 57.0
Actinidia31034 Actinidia chinensis HOM05D005660 ORTHO05D009563 3.4e-54 215.7 175 64.6
Sopen03g038700 Solanum pennellii HOM05D005660 ORTHO05D006954 1.0e-53 214.2 112 97.3
Psat1g025680 Pisum sativum HOM05D005660 ORTHO05D006954 2.2e-53 213.0 210 53.8
Haze_18589 Corylus avellana HOM05D005660 ORTHO05D006954 6.5e-53 211.5 174 63.8
Haze_18590 Corylus avellana HOM05D005660 ORTHO05D006954 1.4e-52 210.3 174 63.2
Nn3g17686 Nelumbo nucifera HOM05D005660 ORTHO05D006954 1.9e-52 209.9 201 54.7
EL10Ac5g11240 Beta vulgaris HOM05D005660 ORTHO05D006954 3.2e-52 209.1 216 50.5
Cfa019836 Carpinus fangiana HOM05D005660 ORTHO05D006954 5.5e-52 208.4 173 61.8
vmacro17684 Vaccinium macrocarpon HOM05D005660 ORTHO05D006954 3.5e-51 205.7 174 63.8
PSO063G2916 Papaver somniferum HOM05D005660 ORTHO05D006954 4.6e-51 205.3 213 54.0
DCAR_011337 Daucus carota HOM05D005660 ORTHO05D006954 1.3e-50 203.8 177 63.3
Cpa.g.c34045 Carica papaya HOM05D005660 ORTHO05D006954 5.1e-50 201.8 173 61.3
TAR629G1816 Trochodendron aralioides HOM05D005660 ORTHO05D006954 8.7e-50 201.1 198 55.1
BcaB04g17376 Brassica carinata HOM05D005660 ORTHO05D006954 1.5e-49 200.3 210 51.4
Thhalv10011768m.g Eutrema salsugineum HOM05D005660 ORTHO05D006954 1.5e-49 200.3 216 50.9
BraA06t23613Z Brassica rapa HOM05D005660 ORTHO05D006954 1.9e-49 199.9 216 50.5
Ah.11g047200 Amaranthus hybridus HOM05D005660 ORTHO05D006954 3.3e-49 199.1 223 49.8
AL1G55790 Arabidopsis lyrata HOM05D005660 ORTHO05D006954 4.3e-49 198.7 214 51.4
A06p04080 Brassica napus HOM05D005660 ORTHO05D006954 5.7e-49 198.4 216 50.5
BcaNung05017 Brassica carinata HOM05D005660 ORTHO05D006954 9.6e-49 197.6 216 50.0
C06p03690 Brassica napus HOM05D005660 ORTHO05D006954 9.6e-49 197.6 216 50.0
BolC6t35508H Brassica oleracea HOM05D005660 ORTHO05D006954 9.6e-49 197.6 216 50.0
CARHR038970 Cardamine hirsuta HOM05D005660 ORTHO05D006954 1.3e-48 197.2 218 50.0
Sp1g35870 Schrenkiella parvula HOM05D005660 ORTHO05D006954 1.3e-48 197.2 211 51.7
VMungo1215G2351 Vigna mungo HOM05D005660 ORTHO05D006954 1.6e-48 196.8 284 42.6
PSO782G0127 Papaver somniferum HOM05D005660 ORTHO05D006954 3.7e-48 195.7 213 52.1
Carub.0001s3813 Capsella rubella HOM05D005660 ORTHO05D006954 6.2e-48 194.9 214 49.1
AT1G48960 Arabidopsis thaliana HOM05D005660 ORTHO05D006954 8.2e-48 194.5 214 50.5
BcaC08g43100 Brassica carinata HOM05D005660 ORTHO05D006954 1.4e-47 193.7 216 49.5
THA.LOC104820410 Tarenaya hassleriana HOM05D005660 ORTHO05D006954 2.4e-47 193.0 234 47.9
BcaC07g37091 Brassica carinata HOM05D005660 ORTHO05D006954 1.2e-46 190.7 215 49.8
C08p04550 Brassica napus HOM05D005660 ORTHO05D006954 1.2e-46 190.7 215 49.8
BolC8t47259H Brassica oleracea HOM05D005660 ORTHO05D006954 1.2e-46 190.7 215 49.8
Ca_02656_v3 Cicer arietinum L. HOM05D005660 ORTHO05D006954 1.2e-46 190.7 176 56.2
A08p04280 Brassica napus HOM05D005660 ORTHO05D006954 2.0e-46 189.9 216 49.5
Aa31LG10G4970 Aethionema arabicum HOM05D005660 ORTHO05D006954 1.0e-45 187.6 200 51.0
arahy.Tifrunner.gnm1.ann1.K4DBIV Arachis hypogaea HOM05D005660 ORTHO05D006954 1.0e-45 187.6 180 56.1
Sc12g0006810 Simmondsia chinensis HOM05D005660 ORTHO05D006954 1.3e-45 187.2 192 50.5
TPR.G27758 Trifolium pratense HOM05D005660 ORTHO05D006954 6.5e-45 184.9 191 51.8
TAR622G0544 Trochodendron aralioides HOM05D005660 ORTHO05D006954 1.4e-44 183.7 205 49.3
GSVIVG01008223001 Vitis vinifera HOM05D005660 ORTHO05D006954 3.2e-44 182.6 206 50.0
BraA08t32455Z Brassica rapa HOM05D005660 ORTHO05D006954 9.3e-44 181.0 216 47.7
AUR62032180 Chenopodium quinoa HOM05D005660 ORTHO05D006954 2.7e-43 179.5 183 53.0
Duzib084G1344 Durio zibethinus HOM05D005660 ORTHO05D006954 1.9e-41 173.3 205 46.8
CAN.G587.76 Capsicum annuum HOM05D005660 ORTHO05D006954 4.3e-41 172.2 121 71.1
Rhsim08G0138400 Rhododendron simsii HOM05D005660 ORTHO05D006954 1.4e-39 167.2 128 65.6
Cpa.g.sc13.65 Carica papaya HOM05D005660 ORTHO05D006954 3.2e-36 156.0 120 65.0
ClCG04G011310 Citrullus lanatus HOM05D005660 ORTHO05D006954 5.5e-36 155.2 132 59.8
Sabra12G0040900 Salix brachista HOM05D005660 ORTHO05D006954 5.5e-36 155.2 123 65.9
Nn4g23692 Nelumbo nucifera HOM05D005660 ORTHO05D006954 6.1e-35 151.8 202 45.0
MBI16_g23748_MAGBIO Magnolia biondii HOM05D005660 ORTHO05D006954 1.0e-34 151.0 187 49.2
Lalb_Chr13g0302411 Lupinus albus HOM05D005660 ORTHO05D006954 3.0e-34 149.4 121 61.2
Phvul.009G201000 Phaseolus vulgaris HOM05D005660 ORTHO05D006954 6.3e-32 141.7 135 55.6
AUR62036940 Chenopodium quinoa HOM05D005660 ORTHO05D006954 1.8e-31 140.2 124 57.3
HPP92_011590 Vanilla planifolia HOM05D005660 ORTHO05D006954 3.4e-30 136.0 145 50.3
ATR0598G023 Amborella trichopoda HOM05D005660 ORTHO05D006954 8.5e-29 131.3 158 46.8
PGSC0003DMG400005618 Solanum tuberosum HOM05D005660 ORTHO05D006954 1.1e-28 131.0 75 89.3
SEGI_40774 Sequoiadendron giganteum HOM05D005660 ORTHO05D006954 6.7e-26 121.7 155 45.8
Zm00001eb126330 Zea mays HOM05D005660 ORTHO05D006954 1.8e-23 113.6 120 52.5
AagrBONN_evm.TU.Sc2ySwM_362.1267 Anthoceros agrestis HOM05D005660 ORTHO05D006954 6.1e-19 98.6 181 34.8
FAN13G2173 Fragaria x ananassa HOM05D005660 ORTHO05D006954 1.3e-16 90.9 93 54.8
CDE07G0562 Ceratophyllum demersum HOM05D005660 ORTHO05D006954 1.8e-15 87.0 166 34.9
Sabra12G0040800 Salix brachista HOM05D005660 ORTHO05D006954 9.1e-15 84.7 94 47.9
Solyc06g069270.1 Solanum lycopersicum HOM05D005660 ORTHO05D006954 2.2e-13 80.1 57 64.9
Lalb_Chr13g0302401 Lupinus albus HOM05D005660 ORTHO05D006954 3.8e-13 79.3 87 46.0
Ca_05056_v3 Cicer arietinum L. HOM05D001012 ORTHO05D002597 2.0e-09 67.0 167 29.3
Glyma.02G121800 Glycine max HOM05D001012 ORTHO05D002597 3.4e-09 66.2 151 29.8
RcHm_v2.0_Chr5g0042351 Rosa chinensis HOM05D005660 ORTHO05D006954 5.7e-09 65.5 44 65.9
RcHm_v2.0_Chr4g0434591 Rosa chinensis HOM05D005660 ORTHO05D006954 7.5e-09 65.1 43 67.4
Lalb_Chr10g0099111 Lupinus albus HOM05D001012 ORTHO05D002597 1.3e-08 64.3 123 31.7
Lalb_Chr17g0341401 Lupinus albus HOM05D001012 ORTHO05D002597 1.3e-08 64.3 150 28.7
VMungo1215G3431 Vigna mungo HOM05D001012 ORTHO05D002597 1.7e-08 63.9 152 29.6
Cpa.g.sc1.163 Carica papaya HOM05D001012 ORTHO05D002597 7.0e-07 58.5 122 33.6
Eucgr.G02426 Eucalyptus grandis HOM05D001012 ORTHO05D002597 9.1e-07 58.2 122 32.0
Lalb_Chr13g0302711 Lupinus albus HOM05D001012 ORTHO05D002597 2.7e-06 56.6 118 28.8


User provided reference genes

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