Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 4.9e-205 717.6 370 100.0
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 3.5e-203 711.4 370 98.9
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 6.4e-197 690.6 370 96.2
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 2.8e-184 648.7 368 90.5
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.9e-177 625.9 369 86.2
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 2.0e-174 615.9 368 84.8
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.1e-172 607.4 383 82.0
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.0e-146 523.9 368 71.2
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 1.9e-140 503.1 367 68.1
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.7e-138 494.6 367 67.3
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.4e-137 491.1 364 67.3
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 7.4e-137 491.1 387 67.2
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 1.3e-136 490.3 367 66.8
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 4.6e-131 471.9 370 63.8
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 6.7e-130 468.0 370 63.8
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 6.7e-130 468.0 368 64.4
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 8.8e-130 467.6 368 64.4
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.5e-129 466.8 366 64.5
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.5e-129 466.8 368 64.1
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.7e-128 463.4 383 61.4
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 1.8e-127 459.9 365 63.3
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 3.2e-124 449.1 371 61.2
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.2e-123 447.2 366 62.3
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 7.9e-123 444.5 367 62.1
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.4e-122 443.7 316 73.4
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 2.3e-122 443.0 368 60.1
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 8.8e-122 441.0 367 61.3
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.5e-121 440.3 368 60.1
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 2.6e-121 439.5 366 60.7
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 9.7e-121 437.6 368 59.5
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 4.8e-120 435.3 370 58.6
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 1.2e-118 430.6 368 57.9
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 5.9e-118 428.3 391 57.5
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 2.9e-117 426.0 364 58.2
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 2.9e-117 426.0 364 58.2
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 2.9e-117 426.0 370 58.9
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 2.1e-115 419.9 364 56.9
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.0e-114 417.5 364 58.0
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 2.3e-114 416.4 365 58.4
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 3.0e-114 416.0 371 58.0
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 6.7e-114 414.8 363 59.8
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 2.6e-113 412.9 368 55.7
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 3.3e-113 412.5 369 56.9
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 5.7e-113 411.8 364 57.1
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.2e-112 409.8 368 58.4
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 6.3e-112 408.3 370 56.8
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 4.1e-111 405.6 368 55.7
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 1.6e-110 403.7 368 57.6
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 2.0e-110 403.3 368 54.1
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 3.5e-110 402.5 364 57.1
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 4.5e-110 402.1 331 61.3
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 4.5e-110 402.1 365 55.1
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 7.7e-110 401.4 368 57.6
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 1.0e-109 401.0 368 55.2
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 2.9e-109 399.4 364 57.4
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.1e-108 397.5 368 56.2
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.1e-108 397.5 366 54.4
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 1.5e-108 397.1 368 55.4
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 1.9e-108 396.7 366 56.0
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 2.5e-108 396.4 367 55.9
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 3.2e-108 396.0 319 62.7
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.2e-108 395.6 368 58.4
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 5.5e-108 395.2 368 57.9
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 5.5e-108 395.2 365 53.7
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 9.4e-108 394.4 365 55.3
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 1.6e-107 393.7 365 54.2
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 2.7e-107 392.9 369 54.7
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 3.6e-107 392.5 368 57.6
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 4.7e-107 392.1 368 53.5
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.4e-106 390.6 371 55.3
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 6.8e-106 388.3 370 53.2
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.2e-105 387.5 365 54.5
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.4e-105 386.0 367 54.2
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 3.4e-105 386.0 368 54.1
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 9.8e-105 384.4 365 54.2
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.3e-104 384.0 370 53.8
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 6.3e-104 381.7 369 52.6
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.4e-103 380.6 361 57.1
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 1.4e-103 380.6 369 51.8
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 7.0e-103 378.3 364 54.1
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.2e-102 377.5 365 52.9
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.2e-102 377.5 366 53.3
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 1.3e-101 374.0 405 48.4
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 2.9e-101 372.9 363 52.9
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.8e-101 372.5 364 53.3
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 3.8e-101 372.5 370 52.2
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 1.1e-100 370.9 366 52.7
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 3.2e-100 369.4 366 53.3
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 3.2e-100 369.4 367 52.3
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.6e-99 367.1 379 50.7
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 3.6e-99 365.9 400 48.5
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 6.1e-99 365.2 366 52.7
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 8.0e-99 364.8 364 51.4
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 1.8e-98 363.6 366 52.7
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 4.0e-98 362.5 363 52.1
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 2.6e-97 359.8 312 58.3
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 3.4e-97 359.4 368 51.1
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 3.4e-97 359.4 364 52.2
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 5.7e-97 358.6 364 51.6
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 2.2e-96 356.7 366 50.8
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 1.8e-95 353.6 366 50.0
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 1.8e-95 353.6 402 48.0
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 2.4e-95 353.2 367 50.4
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 3.1e-95 352.8 353 52.1
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 3.1e-95 352.8 400 48.0
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 1.6e-94 350.5 365 50.4
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 2.7e-94 349.7 480 42.7
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 4.5e-94 349.0 480 43.3
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 5.9e-94 348.6 362 50.3
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.0e-93 347.8 376 49.2
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.9e-92 343.6 317 57.7
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 2.5e-92 343.2 283 61.1
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 5.6e-92 342.0 350 51.4
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.2e-91 340.9 369 49.3
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 1.2e-91 340.9 502 40.6
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 2.1e-91 340.1 281 58.7
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.4e-90 337.4 355 49.9
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.4e-90 337.4 313 55.0
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 2.3e-90 336.7 355 49.6
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 2.3e-90 336.7 354 51.7
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 8.9e-90 334.7 355 49.6
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 4.9e-88 328.9 367 48.0
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 6.4e-88 328.6 368 49.5
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 1.1e-87 327.8 370 48.1
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 7.3e-84 315.1 365 45.5
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 6.2e-83 312.0 314 51.9
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 4.0e-82 309.3 366 45.4
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 6.8e-82 308.5 210 73.3
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 8.9e-82 308.1 560 37.5
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.2e-81 307.8 310 53.5
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.2e-81 307.8 209 73.7
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 7.8e-78 295.0 207 71.0
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.9e-76 290.4 210 70.0
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 3.0e-69 266.5 303 47.2
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.5e-68 263.5 318 48.1
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.3e-66 256.9 207 63.8
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.2e-64 250.4 218 58.7
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.9e-64 249.2 218 58.3
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.6e-62 244.2 162 72.8
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 7.8e-62 241.9 316 41.1
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-60 238.0 164 72.0
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.9e-60 237.3 310 44.5
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.5e-60 236.9 164 71.3
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 4.3e-60 236.1 155 77.4
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.6e-60 235.7 164 71.3
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 5.6e-60 235.7 161 69.6
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 9.6e-60 235.0 159 72.3
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 9.6e-60 235.0 378 37.3
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 3.6e-59 233.0 167 70.7
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.4e-57 226.1 164 70.1
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 4.4e-57 226.1 222 57.2
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.2e-56 223.8 341 39.3
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 8.4e-56 221.9 161 68.3
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 2.7e-54 216.9 208 53.4
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 2.3e-53 213.8 122 87.7
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 6.2e-51 205.7 204 52.5
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 1.1e-50 204.9 284 44.0
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.9e-50 202.2 189 58.2
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 9.0e-50 201.8 380 33.9
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 9.3e-47 191.8 370 32.2
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 3.5e-46 189.9 373 32.7
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.0e-45 188.3 376 33.5
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 8.7e-45 185.3 375 32.8
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 5.6e-44 182.6 138 65.9
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 9.6e-44 181.8 372 32.3
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.2e-41 174.9 121 70.2
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.0e-37 161.8 163 51.5
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.7e-37 158.7 152 55.9
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.5e-36 157.9 257 38.5
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.6e-35 154.5 106 70.8
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 4.5e-33 146.4 136 56.6
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 8.4e-32 142.1 139 53.2
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 3.0e-29 133.7 173 41.0
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 6.5e-24 115.9 128 42.2
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 8.7e-21 105.5 284 28.5
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.0e-12 77.8 309 26.5


User provided reference genes

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