Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 0.0e+00 2095.9 1098 100.0
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 0.0e+00 2068.1 1098 97.9
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 0.0e+00 1964.5 1098 92.0
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 0.0e+00 1772.3 1104 83.7
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 0.0e+00 1607.8 1113 76.1
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1183.3 1135 56.4
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 6.8e-311 1070.8 1099 55.1
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 4.1e-308 1061.6 1142 52.9
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 2.6e-302 1042.3 1142 52.7
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 1.1e-300 1036.9 1141 52.5
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 7.0e-300 1034.2 1146 51.1
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 2.0e-299 1032.7 1132 51.7
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 1.7e-298 1029.6 1138 51.1
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 8.5e-298 1027.3 1195 49.8
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 8.0e-296 1020.8 1140 52.4
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 1.4e-292 1010.0 1130 52.7
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 1.8e-292 1009.6 1138 51.2
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 2.4e-292 1009.2 1146 51.6
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 5.3e-292 1008.1 1144 50.9
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 7.0e-292 1007.7 1117 52.1
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 1.2e-291 1006.9 1139 50.5
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 1.2e-291 1006.9 1130 51.2
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 4.5e-291 1005.0 1142 50.5
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 4.5e-291 1005.0 1138 50.8
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 8.5e-290 1000.7 1131 51.1
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 1.5e-289 1000.0 1111 51.2
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 4.2e-289 998.4 1110 52.0
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 3.6e-288 995.3 1119 51.3
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 6.1e-288 994.6 1104 51.2
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 3.0e-287 992.3 1111 51.5
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 3.0e-287 992.3 1125 50.8
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 8.8e-287 990.7 1140 50.4
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 1.4e-284 983.4 1140 50.0
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 3.1e-284 982.2 1115 50.8
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 6.5e-282 974.5 1090 51.7
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 1.2e-280 970.3 1134 49.5
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 3.6e-280 968.8 1122 49.5
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 8.0e-280 967.6 1149 49.0
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 2.6e-278 962.6 1114 50.7
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 2.4e-276 956.1 1128 50.1
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 4.1e-276 955.3 1116 49.8
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 2.0e-275 953.0 1124 49.3
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 4.5e-275 951.8 1121 50.5
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 3.8e-274 948.7 1104 49.7
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 1.7e-269 933.3 1119 49.2
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 4.9e-269 931.8 1131 49.0
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 1.4e-268 930.2 1100 49.3
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 4.1e-268 928.7 1110 48.6
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 5.4e-268 928.3 1129 49.3
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 3.5e-267 925.6 1114 49.2
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 1.0e-266 924.1 1137 49.3
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 2.5e-265 919.5 1006 51.7
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 3.3e-265 919.1 557 85.6
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 2.1e-264 916.4 1034 50.9
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 2.1e-264 916.4 988 51.6
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 6.2e-264 914.8 1122 48.2
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 4.9e-261 905.2 1134 47.9
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 2.4e-260 902.9 1187 46.2
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.0e-260 901.4 1000 51.8
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 2.0e-259 899.8 1140 47.6
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 8.6e-258 894.4 1151 46.3
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 1.6e-256 890.2 1098 48.3
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 1.1e-255 887.5 1154 47.0
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 1.1e-255 887.5 1134 47.0
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 1.4e-255 887.1 1121 47.6
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 8.9e-255 884.4 1123 47.7
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 1.2e-254 884.0 1113 48.3
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 7.5e-254 881.3 1107 47.6
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 7.5e-254 881.3 1158 47.2
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 6.4e-253 878.2 1119 47.4
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 3.5e-251 872.5 1113 48.0
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 5.1e-250 868.6 956 52.2
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 2.5e-249 866.3 1119 46.8
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 5.6e-249 865.1 1151 47.1
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 7.3e-249 864.8 1134 46.9
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.4e-244 849.7 979 51.1
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 6.0e-243 845.1 1113 45.3
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.3e-242 844.0 1127 45.3
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 5.6e-241 838.6 1109 45.4
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 1.6e-240 837.0 1108 45.6
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 5.2e-239 832.0 1128 44.6
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 1.2e-238 830.9 1114 45.2
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 5.8e-238 828.6 1119 44.4
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 5.8e-238 828.6 1120 44.6
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 1.3e-237 827.4 1119 44.4
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.3e-237 827.4 1123 43.9
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 2.9e-237 826.2 1082 45.7
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 1.1e-236 824.3 1125 44.8
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.4e-236 823.9 1117 45.1
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.4e-236 823.9 1149 44.2
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 2.4e-236 823.2 1120 44.5
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 4.2e-236 822.4 1130 44.9
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 7.1e-236 821.6 453 91.4
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 2.1e-235 820.1 1119 44.6
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 3.6e-232 809.3 1159 43.6
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 4.8e-232 808.9 1122 43.7
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 3.1e-231 806.2 1122 43.3
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 9.0e-231 804.7 1149 43.5
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 2.6e-230 803.1 1124 43.2
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 2.6e-230 803.1 1124 43.2
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 4.5e-230 802.4 1124 43.5
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 5.8e-230 802.0 1124 43.0
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.3e-229 800.8 1045 45.5
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 2.8e-224 783.1 894 50.6
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 8.1e-224 781.6 639 65.3
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 1.4e-223 780.8 1120 42.8
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 4.0e-223 779.2 788 57.4
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.1e-220 771.2 648 64.5
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 7.4e-217 758.4 1123 41.7
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 1.9e-212 743.8 778 55.0
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 7.9e-211 738.4 640 62.2
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 2.3e-210 736.9 1135 41.1
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 6.1e-203 712.2 646 59.6
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 1.0e-202 711.4 1154 41.0
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 3.9e-202 709.5 856 49.2
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.5e-201 707.6 642 59.8
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 2.0e-193 680.6 967 44.9
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 3.2e-188 663.3 505 67.5
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 2.4e-183 647.1 900 45.2
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 2.0e-182 644.0 863 45.1
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 6.7e-178 629.0 647 55.2
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 5.0e-173 612.8 1116 37.5
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 9.8e-169 598.6 646 53.6
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 6.1e-163 579.3 897 40.8
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.3e-152 545.0 690 48.3
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 7.3e-148 529.3 955 38.5
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 1.6e-126 458.4 798 39.0
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 8.7e-125 452.6 853 36.7
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 1.1e-124 452.2 735 38.9
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.5e-124 451.1 268 84.7
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.5e-124 451.1 268 84.7
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 4.8e-107 393.7 601 40.8
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 6.2e-107 393.3 601 40.8
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 2.1e-99 368.2 328 56.1
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.5e-92 344.7 413 49.4
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.1e-86 325.1 206 78.2
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 1.2e-62 246.1 221 57.0
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 6.8e-53 213.8 625 31.7
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 2.0e-52 212.2 813 27.4
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 9.8e-52 209.9 681 28.8
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 4.8e-51 207.6 142 74.6
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 3.5e-41 174.9 157 63.1
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 3.9e-40 171.4 121 76.0
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 2.6e-36 158.7 159 60.4
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 4.4e-36 157.9 132 60.6
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 1.7e-32 146.0 91 75.8
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.4e-26 126.3 164 38.4
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 1.9e-23 115.9 379 30.1
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 3.6e-22 111.7 67 77.6
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 2.6e-12 79.0 130 34.6
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 5.1e-08 64.7 79 49.4
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 3.3e-07 62.0 111 31.5
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 3.6e-06 58.5 393 24.9


User provided reference genes

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