Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 7.0e-270 933.3 460 100.0
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 1.5e-259 899.0 460 96.7
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 2.4e-254 881.7 460 95.0
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.4e-179 631.7 464 70.5
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 6.3e-154 548.1 452 61.7
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.9e-150 536.6 453 62.3
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.2e-149 533.9 464 62.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 1.6e-149 533.5 453 61.8
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.1e-145 518.8 453 60.7
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.7e-144 516.2 464 60.3
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 5.8e-123 445.3 449 51.7
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 9.9e-123 444.5 452 53.5
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.9e-121 440.3 452 52.7
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 7.8e-120 434.9 454 51.5
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.7e-119 433.7 454 52.2
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 3.9e-119 432.6 457 52.1
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 6.6e-119 431.8 447 51.7
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 8.6e-119 431.4 457 51.2
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.2e-117 427.6 452 51.3
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 5.8e-115 418.7 461 49.7
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 7.6e-115 418.3 448 51.6
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.1e-113 414.5 454 48.2
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.1e-113 414.5 463 49.5
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 1.9e-113 413.7 455 51.2
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.4e-113 413.3 446 50.0
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 5.4e-113 412.1 460 49.1
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 6.0e-112 408.7 456 48.9
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.3e-111 407.5 462 48.3
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 2.3e-111 406.8 464 48.1
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 3.0e-111 406.4 454 50.0
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 8.7e-111 404.8 410 54.6
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.9e-110 403.7 455 49.2
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 2.5e-110 403.3 459 47.7
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 4.3e-110 402.5 427 50.6
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 7.3e-110 401.7 444 48.9
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 1.3e-109 401.0 454 49.3
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 2.8e-109 399.8 476 46.8
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 3.6e-109 399.4 461 48.6
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 3.6e-109 399.4 452 48.5
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.1e-108 397.9 451 47.7
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.4e-108 397.5 459 48.4
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 3.1e-108 396.4 451 48.8
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 3.1e-108 396.4 451 46.6
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 3.1e-108 396.4 451 47.7
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 4.0e-108 396.0 449 48.6
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 4.0e-108 396.0 534 44.0
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 6.9e-108 395.2 464 48.3
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 1.2e-107 394.4 452 48.5
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 2.0e-107 393.7 421 50.8
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 2.0e-107 393.7 453 47.9
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.6e-107 393.3 451 48.8
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 2.6e-107 393.3 453 47.5
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.3e-106 391.0 474 45.1
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 2.2e-106 390.2 458 49.1
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 2.9e-106 389.8 452 47.6
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.9e-106 389.0 463 47.9
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 4.9e-106 389.0 501 44.7
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.4e-106 388.7 463 47.7
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.1e-105 387.9 451 46.3
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 1.1e-105 387.9 457 48.6
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.4e-105 386.7 451 48.3
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 7.1e-105 385.2 459 46.4
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 4.6e-104 382.5 461 46.0
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 6.0e-104 382.1 472 47.0
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.0e-103 381.3 452 46.7
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 5.1e-103 379.0 462 45.7
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.5e-102 377.5 451 45.5
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 2.5e-102 376.7 347 55.9
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.6e-101 374.0 460 45.9
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.1e-101 373.6 450 45.3
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.8e-101 372.5 457 45.7
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 8.1e-101 371.7 426 48.8
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.4e-100 370.9 465 45.2
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 4.0e-100 369.4 423 48.0
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 6.9e-100 368.6 449 44.5
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.3e-98 364.4 459 45.3
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 3.2e-97 359.8 456 45.2
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 5.5e-97 359.0 462 44.4
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 9.3e-97 358.2 447 44.7
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.3e-95 353.6 462 44.2
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 3.0e-95 353.2 475 43.6
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.9e-95 352.8 457 43.5
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 5.1e-95 352.4 461 43.6
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 6.7e-95 352.1 462 43.7
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 8.7e-95 351.7 459 46.2
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.9e-94 350.5 460 43.0
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.5e-94 350.1 456 42.3
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.3e-93 347.8 453 43.3
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 4.8e-93 345.9 452 43.1
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 4.0e-92 342.8 462 42.0
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.0e-91 340.5 466 43.3
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 7.6e-91 338.6 457 41.6
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.9e-90 336.7 458 41.7
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.1e-89 334.7 451 42.1
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 1.4e-89 334.3 454 41.9
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 2.5e-89 333.6 468 42.5
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 3.2e-89 333.2 461 42.7
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 9.3e-89 331.6 309 53.4
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 2.1e-88 330.5 454 41.4
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 4.6e-88 329.3 462 42.0
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.0e-87 328.2 457 41.4
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 3.0e-87 326.6 250 60.8
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.9e-87 326.2 457 41.4
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 3.9e-87 326.2 263 58.6
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 6.7e-87 325.5 531 40.5
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 8.7e-87 325.1 263 58.9
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.5e-86 323.6 263 58.6
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 3.3e-86 323.2 456 41.7
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.3e-85 321.2 263 58.6
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 6.3e-85 318.9 260 58.5
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 8.2e-85 318.5 257 58.8
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 2.0e-83 313.9 424 42.2
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 1.0e-82 311.6 260 54.6
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 3.6e-80 303.1 254 56.7
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.9e-78 297.4 459 41.6
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.5e-78 297.0 455 41.1
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 4.3e-78 296.2 453 40.6
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 2.8e-77 293.5 454 38.3
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 2.8e-77 293.5 257 58.4
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.4e-76 290.4 451 38.6
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 2.4e-76 290.4 248 56.9
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 1.7e-74 284.3 243 56.0
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 7.2e-73 278.9 194 66.0
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 4.4e-70 269.6 250 49.2
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 4.4e-70 269.6 463 34.8
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 5.7e-70 269.2 458 35.4
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 9.7e-70 268.5 230 56.5
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.7e-69 267.7 251 49.4
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.7e-69 267.7 251 49.4
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 3.7e-69 266.5 471 35.2
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 4.8e-69 266.2 469 35.4
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 7.7e-67 258.8 270 44.4
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 7.7e-67 258.8 477 33.8
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 7.7e-67 258.8 477 33.8
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 5.0e-66 256.1 483 33.5
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 6.5e-66 255.8 270 43.7
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 1.4e-65 254.6 243 50.2
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 4.2e-65 253.1 250 46.8
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.6e-64 251.1 264 45.8
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 1.0e-63 248.4 481 32.8
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 1.0e-63 248.4 481 32.8
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 1.4e-60 238.0 338 44.1
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.4e-60 238.0 274 47.8
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 5.5e-57 226.1 324 41.7
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 7.2e-57 225.7 162 64.2
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 8.0e-56 222.2 425 35.1
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 3.7e-53 213.4 423 34.5
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.8e-53 213.0 174 51.7
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 6.3e-53 212.6 194 46.9
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 8.5e-50 202.2 275 42.9
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 2.8e-45 187.2 281 42.3
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.9e-42 177.2 324 36.1
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 1.5e-41 174.9 122 67.2
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.5e-41 174.9 121 65.3
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 2.0e-38 164.5 194 40.2
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 6.3e-37 159.5 125 62.4
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 1.6e-35 154.8 282 36.9
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 3.5e-35 153.7 103 66.0
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.5e-33 147.5 103 65.0
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.9e-26 123.6 83 69.9
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 2.5e-25 120.9 101 54.5
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 7.3e-25 119.4 165 35.2
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.5e-22 111.7 94 55.3
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 2.0e-22 111.3 301 31.6
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 8.9e-15 85.9 259 28.2
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 8.3e-13 79.3 57 56.1
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 8.3e-13 79.3 270 31.5
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.3e-10 71.2 132 37.1
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 5.6e-09 66.6 145 32.4


User provided reference genes

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