Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.9e-71 272.3 132 100.0
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 1.3e-56 223.0 109 98.2
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 1.5e-52 209.5 104 94.2
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.5e-44 183.0 103 81.6
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 5.8e-44 181.0 104 78.8
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.2e-43 179.1 104 76.9
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 2.2e-43 179.1 104 76.9
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.9e-43 178.7 104 77.9
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 4.9e-43 177.9 104 77.9
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.4e-42 176.4 104 76.0
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 4.2e-42 174.9 104 75.0
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 7.1e-42 174.1 105 73.3
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 1.6e-41 172.9 104 74.0
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 2.1e-41 172.6 100 78.0
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 2.7e-41 172.2 104 75.0
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.7e-41 172.2 105 73.3
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 2.7e-41 172.2 105 76.2
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 3.5e-41 171.8 104 74.0
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 4.6e-41 171.4 104 76.0
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 4.6e-41 171.4 104 74.0
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 6.0e-41 171.0 105 75.2
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.0e-41 171.0 104 75.0
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 6.0e-41 171.0 104 75.0
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 6.0e-41 171.0 104 76.0
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 6.0e-41 171.0 106 73.6
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 6.0e-41 171.0 104 74.0
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 7.9e-41 170.6 104 73.1
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 7.9e-41 170.6 104 73.1
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 7.9e-41 170.6 102 76.5
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.3e-40 169.9 105 73.3
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.8e-40 169.5 104 72.1
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.8e-40 169.5 102 75.5
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 1.8e-40 169.5 104 74.0
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.8e-40 169.5 102 75.5
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 1.8e-40 169.5 103 73.8
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 2.3e-40 169.1 103 73.8
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 2.3e-40 169.1 104 75.0
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 3.0e-40 168.7 104 75.0
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 3.0e-40 168.7 104 74.0
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 3.0e-40 168.7 101 76.2
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 3.9e-40 168.3 105 74.3
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 5.1e-40 167.9 104 74.0
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 5.1e-40 167.9 104 74.0
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 5.1e-40 167.9 102 72.5
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 5.1e-40 167.9 102 74.5
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 6.7e-40 167.5 104 72.1
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 6.7e-40 167.5 101 75.2
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.1e-39 166.8 102 74.5
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.1e-39 166.8 102 75.5
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.9e-39 166.0 103 71.8
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.9e-39 166.0 103 71.8
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.9e-39 166.0 102 75.5
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.9e-39 166.0 102 74.5
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 2.5e-39 165.6 106 71.7
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.5e-39 165.6 102 74.5
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 3.3e-39 165.2 103 70.9
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 4.3e-39 164.9 104 72.1
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 4.3e-39 164.9 103 71.8
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 4.3e-39 164.9 106 69.8
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 5.7e-39 164.5 103 70.9
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 5.7e-39 164.5 106 71.7
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.7e-39 164.5 100 74.0
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 5.7e-39 164.5 104 72.1
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 5.7e-39 164.5 104 72.1
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 5.7e-39 164.5 104 72.1
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 7.4e-39 164.1 103 70.9
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 7.4e-39 164.1 103 70.9
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 7.4e-39 164.1 104 73.1
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 9.7e-39 163.7 100 74.0
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 9.7e-39 163.7 102 74.5
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 9.7e-39 163.7 102 74.5
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 9.7e-39 163.7 104 70.2
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 9.7e-39 163.7 102 71.6
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 1.3e-38 163.3 104 74.0
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.3e-38 163.3 104 70.2
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 1.3e-38 163.3 104 71.2
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 1.6e-38 162.9 101 72.3
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.6e-38 162.9 104 72.1
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 1.6e-38 162.9 105 72.4
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.6e-38 162.9 105 72.4
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.6e-38 162.9 105 72.4
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.6e-38 162.9 105 72.4
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 1.6e-38 162.9 106 70.8
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.2e-38 162.5 102 71.6
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 2.2e-38 162.5 102 72.5
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 2.8e-38 162.2 103 69.9
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 2.8e-38 162.2 103 69.9
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 2.8e-38 162.2 103 69.9
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 2.8e-38 162.2 102 69.6
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 2.8e-38 162.2 104 71.2
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.8e-38 162.2 100 73.0
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 2.8e-38 162.2 104 71.2
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 3.7e-38 161.8 103 69.9
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.7e-38 161.8 104 69.2
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 6.3e-38 161.0 105 71.4
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 6.3e-38 161.0 104 72.1
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 6.3e-38 161.0 105 70.5
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 6.3e-38 161.0 103 69.9
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.1e-37 160.2 103 68.9
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 1.4e-37 159.8 99 72.7
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.8e-37 159.5 104 66.3
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 1.8e-37 159.5 102 71.6
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 2.4e-37 159.1 106 65.1
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.1e-37 158.3 105 68.6
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 5.3e-37 157.9 102 71.6
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 5.3e-37 157.9 102 71.6
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 5.3e-37 157.9 101 70.3
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 6.9e-37 157.5 99 69.7
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 6.9e-37 157.5 99 69.7
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 9.0e-37 157.1 102 69.6
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 9.0e-37 157.1 102 71.6
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 9.0e-37 157.1 102 71.6
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 9.0e-37 157.1 104 71.2
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 1.5e-36 156.4 102 69.6
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.5e-36 156.4 102 69.6
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 1.5e-36 156.4 101 73.3
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.4e-36 155.2 103 67.0
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 4.5e-36 154.8 101 69.3
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 4.5e-36 154.8 101 70.3
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 7.6e-36 154.1 100 68.0
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.7e-35 152.9 104 65.4
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.2e-35 152.5 102 69.6
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.9e-35 152.1 102 65.7
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 3.8e-35 151.8 92 73.9
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.9e-34 149.4 103 64.1
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.9e-34 149.4 103 65.0
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.5e-34 149.1 103 64.1
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.5e-34 149.1 103 64.1
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 5.5e-34 147.9 103 65.0
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 5.5e-34 147.9 103 65.0
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 5.5e-34 147.9 103 65.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 5.5e-34 147.9 103 65.0
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 5.5e-34 147.9 103 65.0
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 7.2e-34 147.5 103 64.1
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.6e-33 146.4 103 63.1
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.0e-32 143.7 104 60.6
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 1.3e-32 143.3 104 63.5
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 1.8e-32 142.9 101 62.4
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 3.3e-31 138.7 103 63.1
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 3.3e-31 138.7 103 63.1
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 4.3e-31 138.3 88 72.7
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 7.4e-31 137.5 103 62.1
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 7.4e-31 137.5 103 62.1
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.7e-30 136.3 83 74.7
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 8.2e-30 134.0 100 58.0
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 9.1e-29 130.6 106 57.5
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 4.5e-28 128.3 77 75.3
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 6.7e-24 114.4 101 54.5
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 7.4e-23 110.9 60 85.0
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 2.4e-21 105.9 64 75.0
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 2.4e-21 105.9 61 80.3
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 3.1e-21 105.5 60 81.7
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 2.6e-20 102.4 61 75.4
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 4.2e-18 95.1 103 51.5
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 6.1e-09 64.7 109 33.9
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 3.0e-08 62.4 44 63.6
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.2e-06 56.2 27 92.6


User provided reference genes

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