Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 5.9e-35 150.2 71 100.0
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 5.9e-35 150.2 71 100.0
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 2.3e-34 148.3 70 100.0
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 5.6e-33 143.7 71 97.2
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 5.6e-33 143.7 71 97.2
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 5.6e-33 143.7 71 97.2
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 1.2e-32 142.5 71 94.4
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.1e-32 141.7 70 97.1
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.1e-32 141.7 71 94.4
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 4.7e-32 140.6 71 93.0
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 4.7e-32 140.6 71 93.0
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 6.1e-32 140.2 70 95.7
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 6.1e-32 140.2 71 93.0
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 8.0e-32 139.8 70 95.7
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 8.0e-32 139.8 71 94.4
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 8.0e-32 139.8 71 93.0
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 8.0e-32 139.8 71 93.0
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 1.4e-31 139.0 71 91.5
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 3.1e-31 137.9 71 91.5
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 3.1e-31 137.9 71 91.5
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 90.1
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 91.5
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 91.5
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 91.5
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 5.2e-31 137.1 71 91.5
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 1.2e-30 136.0 71 91.5
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 1.2e-30 136.0 71 90.1
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.2e-30 136.0 71 87.3
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 1.5e-30 135.6 71 90.1
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.5e-30 135.6 71 90.1
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 3.4e-30 134.4 71 88.7
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 3.4e-30 134.4 71 88.7
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 4.4e-30 134.0 71 90.1
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 4.4e-30 134.0 71 88.7
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 5.8e-30 133.7 71 88.7
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 7.5e-30 133.3 71 87.3
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 7.5e-30 133.3 71 88.7
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 88.7
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 9.8e-30 132.9 71 90.1
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 87.3
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 87.3
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 87.3
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 87.3
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 1.3e-29 132.5 71 87.3
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 87.3
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 87.3
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 87.3
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 87.3
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 1.7e-29 132.1 71 87.3
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 2.2e-29 131.7 70 88.6
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 2.2e-29 131.7 70 88.6
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 2.2e-29 131.7 70 88.6
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 2.2e-29 131.7 70 88.6
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 2.2e-29 131.7 70 88.6
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 2.2e-29 131.7 70 88.6
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.9e-29 131.3 71 88.7
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 2.9e-29 131.3 71 88.7
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 3.7e-29 131.0 71 85.9
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 85.9
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 85.9
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 85.9
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 4.9e-29 130.6 69 88.4
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 4.9e-29 130.6 71 85.9
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 85.9
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 84.5
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 8.3e-29 129.8 71 85.9
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 1.1e-28 129.4 71 84.5
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 1.1e-28 129.4 71 84.5
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 84.5
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 84.5
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 1.4e-28 129.0 71 84.5
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.9e-28 128.6 71 88.7
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 2.4e-28 128.3 70 85.7
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 2.4e-28 128.3 71 84.5
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 2.4e-28 128.3 71 84.5
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 2.4e-28 128.3 71 83.1
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 2.4e-28 128.3 71 84.5
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 3.2e-28 127.9 71 85.9
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 3.2e-28 127.9 71 83.1
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 3.2e-28 127.9 71 83.1
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 4.1e-28 127.5 71 80.3
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 4.1e-28 127.5 71 87.3
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 5.4e-28 127.1 71 84.5
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 1.2e-27 125.9 71 83.1
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 1.2e-27 125.9 70 81.4
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 1.6e-27 125.6 71 80.3
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 2.7e-27 124.8 71 81.7
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 4.6e-27 124.0 71 80.3
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 1.7e-26 122.1 71 80.3
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 3.0e-26 121.3 62 87.1
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 5.0e-26 120.6 71 78.9
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 5.0e-26 120.6 90 68.9
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 1.5e-25 119.0 63 85.7
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 4.7e-24 114.0 71 80.3
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 6.2e-24 113.6 71 70.4
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 1.1e-23 112.8 99 60.6
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 1.1e-23 112.8 69 75.4
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 4.0e-23 110.9 71 71.8
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 6.8e-23 110.2 69 75.4
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 7.5e-22 106.7 50 98.0
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 6.4e-21 103.6 145 45.5
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 1.4e-20 102.4 71 64.8
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 7.8e-19 96.7 56 80.4
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 1.0e-18 96.3 53 83.0
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 1.7e-18 95.5 63 76.2
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 5.1e-18 94.0 48 89.6
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 2.5e-17 91.7 49 89.8
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 3.3e-17 91.3 62 72.6
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 4.7e-16 87.4 44 84.1
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 4.0e-15 84.3 51 76.5
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 5.2e-15 84.0 62 64.5
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 3.4e-14 81.3 47 78.7
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 5.8e-14 80.5 69 55.1
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 1.3e-13 79.3 71 52.1
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 2.9e-13 78.2 48 75.0
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 8.3e-13 76.6 50 72.0
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 8.3e-13 76.6 38 84.2
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 1.1e-12 76.3 69 58.0
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 2.4e-12 75.1 70 51.4
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 2.4e-12 75.1 38 92.1
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.2e-12 74.7 53 67.9
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 9.2e-12 73.2 48 72.9
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.2e-11 72.8 34 97.1
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 2.7e-11 71.6 37 91.9
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 3.5e-11 71.2 37 86.5
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 4.6e-11 70.9 43 79.1
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 1.7e-10 68.9 47 70.2
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 8.6e-10 66.6 43 74.4
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 2.5e-09 65.1 37 83.8
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 9.5e-09 63.2 36 83.3
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 9.5e-09 63.2 36 83.3
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 9.5e-09 63.2 36 83.3
Nitab4.5_0000976g0200 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.1e-07 59.7 27 96.3


User provided reference genes

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