Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g116770.3 Solanum lycopersicum HOM05D002526 ORTHO05D010157 1.7e-168 595.9 303 100.0
Sopen03g035690 Solanum pennellii HOM05D002526 ORTHO05D010157 4.8e-166 587.8 304 99.0
PGSC0003DMG400000622 Solanum tuberosum HOM05D002526 ORTHO05D010157 9.3e-162 573.5 303 95.7
CAN.G407.78 Capsicum annuum HOM05D002526 ORTHO05D000105 1.2e-137 493.4 294 86.7
Nitab4.5_0003463g0050 Nicotiana tabacum HOM05D001442 ORTHO05D001369 3.4e-124 448.7 286 80.4
Nitab4.5_0008560g0050 Nicotiana tabacum HOM05D001442 ORTHO05D010157 2.2e-123 446.0 301 77.4
Peaxi162Scf00332g00625 Petunia axillaris HOM05D002526 ORTHO05D010157 4.7e-121 438.3 304 76.6
Dinv30612 Davidia involucrata HOM05D002526 ORTHO05D004039 9.8e-79 297.7 272 59.9
CSS0025449 Camellia sinensis var. sinensis HOM05D002526 ORTHO05D004039 6.4e-78 295.0 259 59.5
vmacro19003 Vaccinium macrocarpon HOM05D002526 ORTHO05D010157 1.3e-75 287.3 271 57.9
Hma1.2p1_0242F.1_g100630 Hydrangea macrophylla HOM05D002526 ORTHO05D010157 8.6e-75 284.6 301 53.5
Actinidia15756 Actinidia chinensis HOM05D002526 ORTHO05D010157 1.5e-74 283.9 295 54.2
CiPaw.01G248800 Carya illinoinensis HOM05D002526 ORTHO05D004039 1.5e-74 283.9 261 57.9
Haze_16568 Corylus avellana HOM05D002526 ORTHO05D004039 2.3e-72 276.6 249 58.6
TWI18G0347 Tripterygium wilfordii HOM05D002526 ORTHO05D010157 6.8e-72 275.0 248 56.5
QL03p020400 Quercus lobata HOM05D002526 ORTHO05D010157 1.5e-71 273.9 311 49.8
QL05p030835 Quercus lobata HOM05D002526 ORTHO05D010157 1.5e-71 273.9 311 49.8
Prupe.3G088600 Prunus persica HOM05D002526 ORTHO05D010157 2.9e-70 269.6 252 55.2
FvH4_6g29541 Fragaria vesca HOM05D002526 ORTHO05D010157 4.9e-70 268.9 247 56.7
FAN14G4319 Fragaria x ananassa HOM05D002526 ORTHO05D010157 4.9e-70 268.9 247 56.7
SGA_v2.0_scaffold5G02704 Striga asiatica HOM05D002526 ORTHO05D010157 4.1e-69 265.8 272 54.4
Nn2g12105 Nelumbo nucifera HOM05D002526 ORTHO05D010157 5.4e-69 265.4 294 53.1
MD17G1213300 Malus domestica HOM05D002526 ORTHO05D010157 1.2e-68 264.2 282 51.1
RcHm_v2.0_Chr2g0135091 Rosa chinensis HOM05D002526 ORTHO05D010157 4.6e-68 262.3 246 54.5
Lj5A73G68 Lonicera japonica HOM05D002526 ORTHO05D010157 1.0e-67 261.2 294 52.7
Manes.04G112150 Manihot esculenta HOM05D002526 ORTHO05D004039 1.0e-67 261.2 269 53.5
Potri.001G202300 Populus trichocarpa HOM05D002526 ORTHO05D010157 3.9e-67 259.2 253 54.2
Hund00650 Selenicereus undatus HOM05D002526 ORTHO05D010157 8.6e-67 258.1 235 57.0
Duzib192G0551 Durio zibethinus HOM05D002526 ORTHO05D010157 2.5e-66 256.5 230 57.8
Hund00651 Selenicereus undatus HOM05D002526 ORTHO05D010157 2.5e-66 256.5 235 57.0
Migut.I00757 Erythranthe guttata HOM05D002526 ORTHO05D010157 7.3e-66 255.0 291 50.2
Gohir.A05G122650 Gossypium hirsutum HOM05D002526 ORTHO05D010157 4.7e-65 252.3 225 57.8
Gorai.009G127500 Gossypium raimondii HOM05D002526 ORTHO05D010157 8.1e-65 251.5 225 57.8
GSVIVG01017348001 Vitis vinifera HOM05D002526 ORTHO05D004039 1.4e-64 250.8 300 47.7
COL.COLO4_11933 Corchorus olitorius HOM05D002526 ORTHO05D004039 4.0e-64 249.2 277 50.2
Atru.chr1.2906 Acer truncatum HOM05D002526 ORTHO05D010157 4.4e-63 245.7 262 52.7
Ciclev10024867m.g Citrus clementina HOM05D002526 ORTHO05D004039 5.8e-63 245.4 269 50.2
Thecc.06G028700 Theobroma cacao HOM05D002526 ORTHO05D010157 5.8e-63 245.4 269 50.6
Cc04_g04450 Coffea canephora HOM05D002526 ORTHO05D010157 2.2e-62 243.4 277 48.0
CANSAT56G1960 Cannabis sativa HOM05D002526 ORTHO05D010157 1.2e-60 237.7 233 54.1
Oeu045127.1 Olea europaea HOM05D002526 ORTHO05D010157 1.6e-60 237.3 221 58.4
SalBow2G1951 Salvia bowleyana HOM05D002526 ORTHO05D010157 4.6e-60 235.7 263 47.5
Lsat_1_v5_gn_4_88500 Lactuca sativa HOM05D002526 ORTHO05D010157 3.9e-59 232.6 269 47.2
AUR62016503 Chenopodium quinoa HOM05D002526 ORTHO05D010157 7.3e-58 228.4 220 54.1
Actinidia01740 Actinidia chinensis HOM05D002526 ORTHO05D010157 2.8e-57 226.5 264 50.0
AUR62011678 Chenopodium quinoa HOM05D002526 ORTHO05D010157 8.1e-57 224.9 250 50.0
Aqoxy7G03644 Aquilegia oxysepala HOM05D002526 ORTHO05D010157 2.4e-56 223.4 295 46.8
AL1G27410 Arabidopsis lyrata HOM05D002526 ORTHO05D010157 6.9e-56 221.9 238 49.6
Carub.0001s1507 Capsella rubella HOM05D002526 ORTHO05D010157 9.0e-56 221.5 242 48.3
Sp1g13640 Schrenkiella parvula HOM05D002526 ORTHO05D010157 3.4e-55 219.5 236 49.2
CARHR015850 Cardamine hirsuta HOM05D002526 ORTHO05D010157 4.4e-55 219.2 242 47.9
Thhalv10008365m.g Eutrema salsugineum HOM05D002526 ORTHO05D010157 9.9e-55 218.0 274 44.2
Aa31LG7G90 Aethionema arabicum HOM05D002526 ORTHO05D010157 1.7e-54 217.2 228 50.0
AT1G15320 Arabidopsis thaliana HOM05D002526 ORTHO05D010157 4.9e-54 215.7 242 48.8
ECA232G1362 Erigeron canadensis HOM05D002526 ORTHO05D010157 1.4e-53 214.2 281 45.6
BraA06t24312Z Brassica rapa HOM05D002526 ORTHO05D010157 4.2e-53 212.6 250 46.8
EL10Ac9g22041 Beta vulgaris HOM05D002526 ORTHO05D010157 9.3e-53 211.5 267 45.7
A06p11330 Brassica napus HOM05D002526 ORTHO05D010157 9.3e-53 211.5 251 46.6
BolC5t30082H Brassica oleracea HOM05D002526 ORTHO05D010157 1.6e-52 210.7 242 47.1
FAN02G2169 Fragaria x ananassa HOM05D002526 ORTHO05D010157 4.6e-52 209.1 193 57.0
THA.LOC104812514 Tarenaya hassleriana HOM05D002526 ORTHO05D010157 3.9e-51 206.1 227 49.3
Gohir.D05G123550 Gossypium hirsutum HOM05D002526 ORTHO05D010157 1.4e-48 197.6 180 57.2
Sc15g0001450 Simmondsia chinensis HOM05D002526 ORTHO05D010157 2.4e-48 196.8 225 47.1
BcaC05g25469 Brassica carinata HOM05D002526 ORTHO05D010157 2.9e-46 189.9 229 46.7
PSO161G0040 Papaver somniferum HOM05D002526 ORTHO05D010157 1.6e-44 184.1 262 43.1
PGR102G2637 Punica granatum HOM05D002526 ORTHO05D010157 4.6e-44 182.6 261 42.9
DCAR_025516 Daucus carota HOM05D002526 ORTHO05D004039 2.1e-41 173.7 228 44.3
Ah.01g021710 Amaranthus hybridus HOM05D002526 ORTHO05D010157 6.2e-41 172.2 219 46.6
C05p13450 Brassica napus HOM05D002526 ORTHO05D010157 2.6e-39 166.8 186 49.5
FAN02G0105 Fragaria x ananassa HOM05D002526 ORTHO05D010157 6.2e-33 145.6 116 63.8
unitig_0.g1112 Utricularia gibba HOM05D002081 ORTHO05D002088 2.0e-31 140.6 229 39.3
Cpa.g.sc938.3 Carica papaya HOM05D002526 ORTHO05D010157 2.9e-30 136.7 213 40.8
BcaC03g16017 Brassica carinata HOM05D002526 ORTHO05D010157 1.1e-18 98.2 83 53.0
BcaC01g00573 Brassica carinata HOM05D002526 ORTHO05D010157 1.7e-17 94.4 83 53.0
SEGI_30845 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 1.3e-14 84.7 207 30.4
HPP92_021873 Vanilla planifolia HOM05D002526 ORTHO05D010157 1.3e-14 84.7 220 31.8
SEGI_27567 Sequoiadendron giganteum HOM05D002526 ORTHO05D010157 1.7e-14 84.3 207 29.0
C09p66980 Brassica napus HOM05D002526 ORTHO05D010157 1.4e-11 74.7 82 42.7
BcaC02g09864 Brassica carinata HOM05D002526 ORTHO05D010157 8.8e-11 72.0 82 41.5
C04p35770 Brassica napus HOM05D002526 ORTHO05D010157 8.8e-11 72.0 82 41.5
BolC4t25223H Brassica oleracea HOM05D002526 ORTHO05D010157 8.8e-11 72.0 82 41.5
BolC2t09789H Brassica oleracea HOM05D002526 ORTHO05D010157 1.1e-10 71.6 67 49.3
C02p37700 Brassica napus HOM05D002526 ORTHO05D010157 3.3e-10 70.1 67 47.8
COL.COLO4_12110 Corchorus olitorius HOM05D001914 ORTHO05D000623 3.3e-10 70.1 252 28.2
C03p81490 Brassica napus HOM05D002526 ORTHO05D010157 1.4e-08 64.7 67 46.3
BolC3t20420H Brassica oleracea HOM05D002526 ORTHO05D010157 1.4e-08 64.7 67 46.3
AUR62000548 Chenopodium quinoa HOM05D000828 ORTHO05D000623 4.5e-07 59.7 212 28.8
Lj4g0022788 Lotus japonicus HOM05D000828 ORTHO05D000623 5.0e-06 56.2 218 26.6


User provided reference genes

Program Settings