Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g116460.4 Solanum lycopersicum HOM05D003948 ORTHO05D004610 2.9e-188 661.8 336 100.0
Sopen03g035350 Solanum pennellii HOM05D003948 ORTHO05D004610 2.7e-178 628.6 336 96.4
PGSC0003DMG402000630 Solanum tuberosum HOM05D003948 ORTHO05D004610 1.8e-169 599.4 335 91.9
CAN.G407.106 Capsicum annuum HOM05D003948 ORTHO05D004610 1.7e-156 556.2 336 85.1
Nitab4.5_0006574g0020 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.9e-152 542.7 336 83.3
Nitab4.5_0002257g0010 Nicotiana tabacum HOM05D003948 ORTHO05D004610 1.4e-150 536.6 336 82.7
Peaxi162Scf00274g00859 Petunia axillaris HOM05D003948 ORTHO05D004610 1.9e-147 526.2 329 82.1
Dinv30573 Davidia involucrata HOM05D003948 ORTHO05D004610 2.6e-120 436.0 331 67.4
Actinidia01766 Actinidia chinensis HOM05D003948 ORTHO05D004610 2.3e-113 412.9 331 65.6
Hma1.2p1_0317F.1_g123650 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.1e-110 404.1 339 62.5
TAR625G1371 Trochodendron aralioides HOM05D003948 ORTHO05D004610 2.0e-109 399.8 333 61.3
Actinidia15794 Actinidia chinensis HOM05D003948 ORTHO05D004610 7.7e-109 397.9 333 63.7
MBI04_g24205_MAGBIO Magnolia biondii HOM05D003948 ORTHO05D004610 1.3e-108 397.1 333 62.2
Cc04_g04060 Coffea canephora HOM05D003948 ORTHO05D004610 1.9e-107 393.3 333 62.2
CiPaw.01G244700 Carya illinoinensis HOM05D003948 ORTHO05D004610 9.5e-107 391.0 331 62.5
Ciclev10026043m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.8e-106 389.4 334 61.1
Eucgr.J03052 Eucalyptus grandis HOM05D003948 ORTHO05D004610 3.6e-106 389.0 331 58.9
COL.COLO4_12905 Corchorus olitorius HOM05D003948 ORTHO05D004610 4.7e-106 388.7 327 63.0
Sabra03G0035900 Salix brachista HOM05D003948 ORTHO05D004610 2.3e-105 386.3 332 59.9
Cfa002007 Carpinus fangiana HOM05D003948 ORTHO05D004610 4.0e-105 385.6 335 62.1
Potri.003G061800 Populus trichocarpa HOM05D003948 ORTHO05D004610 3.4e-104 382.5 332 59.6
Manes.11G053200 Manihot esculenta HOM05D003948 ORTHO05D004610 4.4e-104 382.1 330 59.4
Haze_16515 Corylus avellana HOM05D003948 ORTHO05D004610 4.9e-103 378.6 331 61.3
Nn8g39388 Nelumbo nucifera HOM05D003948 ORTHO05D004610 4.9e-103 378.6 331 59.5
GSVIVG01017270001 Vitis vinifera HOM05D003948 ORTHO05D004610 8.3e-103 377.9 279 68.1
CSS0016874 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.8e-102 376.7 330 61.8
VMungo1080G0933 Vigna mungo HOM05D003948 ORTHO05D004610 1.2e-101 374.0 305 63.9
vmacro18966 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 2.0e-101 373.2 333 61.3
PGR031G2458 Punica granatum HOM05D003948 ORTHO05D004610 4.5e-101 372.1 339 60.2
Cpa.g.sc10.224 Carica papaya HOM05D003948 ORTHO05D004610 1.0e-100 370.9 297 66.3
Glyma.15G010100 Glycine max HOM05D003948 ORTHO05D004610 1.3e-100 370.5 339 59.0
Rhsim08G0216000 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.9e-100 369.0 332 60.5
AUR62016374 Chenopodium quinoa HOM05D003948 ORTHO05D004610 1.5e-99 367.1 340 58.8
Gorai.009G130200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.9e-99 366.7 323 61.9
Glyma.13G363700 Glycine max HOM05D003948 ORTHO05D004610 2.5e-99 366.3 340 58.5
Gohir.D05G126200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.3e-99 365.5 323 61.9
Gorai.011G081300 Gossypium raimondii HOM05D003948 ORTHO05D004610 4.3e-99 365.5 329 59.3
ClCG07G012790 Citrullus lanatus HOM05D003948 ORTHO05D004610 5.6e-99 365.2 307 60.6
Gohir.A10G076166 Gossypium hirsutum HOM05D003948 ORTHO05D004610 9.5e-99 364.4 329 59.0
Gohir.A05G125200 Gossypium hirsutum HOM05D003948 ORTHO05D004610 2.8e-98 362.8 323 61.6
AUR62011555 Chenopodium quinoa HOM05D003948 ORTHO05D004610 3.6e-98 362.5 338 57.7
RcHm_v2.0_Chr2g0136511 Rosa chinensis HOM05D003948 ORTHO05D004610 3.6e-98 362.5 332 59.0
Prupe.3G081000 Prunus persica HOM05D003948 ORTHO05D004610 4.7e-98 362.1 255 70.6
Ah.01g011210 Amaranthus hybridus HOM05D003948 ORTHO05D004610 1.4e-97 360.5 328 57.0
Lalb_Chr22g0351001 Lupinus albus HOM05D003948 ORTHO05D004610 3.1e-97 359.4 343 58.9
FAN14G0295 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.2e-96 357.5 327 59.9
EL10Ac9g21937 Beta vulgaris HOM05D003948 ORTHO05D004610 7.5e-96 354.8 334 56.6
FAN05G4627 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.7e-95 353.6 327 58.7
arahy.Tifrunner.gnm1.ann1.37ZKFY Arachis hypogaea HOM05D003948 ORTHO05D004610 4.9e-95 352.1 295 63.1
arahy.Tifrunner.gnm1.ann1.U8XBHX Arachis hypogaea HOM05D003948 ORTHO05D004610 4.9e-95 352.1 295 63.1
Medtr2g103300 Medicago truncatula HOM05D003948 ORTHO05D004610 4.9e-95 352.1 315 60.0
TWI34G1010 Tripterygium wilfordii HOM05D003948 ORTHO05D004610 1.4e-94 350.5 331 55.3
TPR.G37189 Trifolium pratense HOM05D003948 ORTHO05D004610 2.4e-94 349.7 316 59.5
MELO3C017899.2 Cucumis melo HOM05D003948 ORTHO05D004610 3.2e-94 349.4 334 55.4
Thhalv10008186m.g Eutrema salsugineum HOM05D003948 ORTHO05D004610 3.2e-94 349.4 311 58.5
THA.LOC104813569 Tarenaya hassleriana HOM05D003948 ORTHO05D004610 3.2e-94 349.4 326 57.7
Sed0014623 Sechium edule HOM05D003948 ORTHO05D004610 5.4e-94 348.6 330 56.4
Lj3g0025185 Lotus japonicus HOM05D003948 ORTHO05D004610 7.0e-94 348.2 304 59.9
CsaV3_4G001410 Cucumis sativus L. HOM05D003948 ORTHO05D004610 9.2e-94 347.8 334 55.1
Ca_01082_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 1.2e-93 347.4 326 58.0
FAN02G3756 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.6e-93 347.1 339 56.3
MD17G1205900 Malus domestica HOM05D003948 ORTHO05D004610 2.0e-93 346.7 331 58.0
CANSAT56G2529 Cannabis sativa HOM05D003948 ORTHO05D004610 3.5e-93 345.9 334 57.2
Lj3g0004615 Lotus japonicus HOM05D003948 ORTHO05D004610 6.0e-93 345.1 297 63.0
Dinv36546 Davidia involucrata HOM05D003948 ORTHO05D004610 7.8e-93 344.7 331 54.7
Thecc.09G123100 Theobroma cacao HOM05D003948 ORTHO05D004610 1.0e-92 344.4 335 52.2
AL1G27520 Arabidopsis lyrata HOM05D003948 ORTHO05D004610 1.7e-92 343.6 311 58.2
Sp1g13770 Schrenkiella parvula HOM05D003948 ORTHO05D004610 1.7e-92 343.6 311 58.2
Ciclev10008863m.g Citrus clementina HOM05D003948 ORTHO05D004610 2.3e-92 343.2 332 55.7
DCAR_025486 Daucus carota HOM05D003948 ORTHO05D004610 2.3e-92 343.2 303 59.4
MD17G1205400 Malus domestica HOM05D003948 ORTHO05D004610 3.9e-92 342.4 331 58.0
MSTRG.11117 Avicennia marina HOM05D003948 ORTHO05D004610 8.6e-92 341.3 332 54.8
AT1G15410 Arabidopsis thaliana HOM05D003948 ORTHO05D004610 1.1e-91 340.9 333 55.3
Carub.0001s1520 Capsella rubella HOM05D003948 ORTHO05D004610 1.9e-91 340.1 307 57.7
BcaC05g25483 Brassica carinata HOM05D003948 ORTHO05D004610 4.3e-91 339.0 335 54.9
CiPaw.03G241800 Carya illinoinensis HOM05D003948 ORTHO05D004610 7.3e-91 338.2 335 53.7
A06p11460 Brassica napus HOM05D003948 ORTHO05D004610 2.1e-90 336.7 331 54.4
BraA06t24323Z Brassica rapa HOM05D003948 ORTHO05D004610 2.1e-90 336.7 331 54.4
Duzib168G1107 Durio zibethinus HOM05D003948 ORTHO05D004610 2.1e-90 336.7 333 51.7
Actinidia40456 Actinidia chinensis HOM05D003948 ORTHO05D004610 4.7e-90 335.5 327 54.4
Psat5g301000 Pisum sativum HOM05D003948 ORTHO05D004610 8.0e-90 334.7 294 59.5
BolC5t30094H Brassica oleracea HOM05D003948 ORTHO05D004610 1.1e-89 334.3 331 53.8
Atru.chr7.1198 Acer truncatum HOM05D003948 ORTHO05D004610 1.8e-89 333.6 332 54.5
CSS0012666 Camellia sinensis var. sinensis HOM05D003948 ORTHO05D004610 1.8e-89 333.6 333 54.4
C05p13580 Brassica napus HOM05D003948 ORTHO05D004610 2.3e-89 333.2 331 53.8
Hund06577 Selenicereus undatus HOM05D003948 ORTHO05D004610 3.1e-89 332.8 335 53.7
COL.COLO4_05762 Corchorus olitorius HOM05D003948 ORTHO05D004610 4.0e-89 332.4 311 53.1
ATR1156G038 Amborella trichopoda HOM05D003948 ORTHO05D004610 5.2e-89 332.0 332 54.5
Rhsim01G0076600 Rhododendron simsii HOM05D003948 ORTHO05D004610 1.5e-88 330.5 332 52.4
Lsat_1_v5_gn_4_105880 Lactuca sativa HOM05D003948 ORTHO05D004610 5.8e-88 328.6 262 65.6
Prupe.7G239700 Prunus persica HOM05D003948 ORTHO05D004610 5.8e-88 328.6 328 53.4
Aqoxy7G02097 Aquilegia oxysepala HOM05D003948 ORTHO05D004610 2.2e-87 326.6 335 53.1
QL02p087786 Quercus lobata HOM05D003948 ORTHO05D004610 2.2e-87 326.6 335 53.1
Duzib187G0771 Durio zibethinus HOM05D003948 ORTHO05D004610 4.9e-87 325.5 333 52.0
Actinidia22003 Actinidia chinensis HOM05D003948 ORTHO05D004610 8.3e-87 324.7 333 52.3
vmacro20597 Vaccinium macrocarpon HOM05D003948 ORTHO05D004610 3.5e-85 319.3 352 49.7
Gorai.001G040900 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.7e-84 317.0 332 49.7
Cpa.g.sc648.2 Carica papaya HOM05D003948 ORTHO05D004610 3.9e-84 315.8 298 56.7
RcHm_v2.0_Chr2g0089121 Rosa chinensis HOM05D003948 ORTHO05D004610 3.9e-84 315.8 332 49.4
Gohir.D07G038800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 8.6e-84 314.7 332 49.7
Manes.14G130600 Manihot esculenta HOM05D003948 ORTHO05D004610 8.6e-84 314.7 331 49.2
Rhsim01G0076700 Rhododendron simsii HOM05D003948 ORTHO05D004610 8.6e-84 314.7 334 51.5
Sabra01G0139400 Salix brachista HOM05D003948 ORTHO05D004610 8.6e-84 314.7 344 51.7
Gohir.A07G034800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.9e-83 313.5 332 49.4
Dinv41531 Davidia involucrata HOM05D003948 ORTHO05D004610 2.5e-83 313.2 260 61.5
Thecc.06G071300 Theobroma cacao HOM05D003948 ORTHO05D004610 9.5e-83 311.2 280 59.6
FAN19G2000 Fragaria x ananassa HOM05D003948 ORTHO05D004610 6.2e-82 308.5 329 49.2
FvH4_1g03590 Fragaria vesca HOM05D003948 ORTHO05D004610 8.1e-82 308.1 329 49.2
FAN23G0975 Fragaria x ananassa HOM05D003948 ORTHO05D004610 1.4e-81 307.4 329 49.5
FAN28G1194 Fragaria x ananassa HOM05D003948 ORTHO05D004610 2.3e-81 306.6 330 49.1
FAN26G0686 Fragaria x ananassa HOM05D003948 ORTHO05D004610 8.9e-81 304.7 346 48.3
Haze_25613 Corylus avellana HOM05D003948 ORTHO05D004610 1.5e-80 303.9 331 49.8
Hma1.2p1_0018F.1_g012640 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 1.3e-79 300.8 262 58.0
AUR62011090 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.4e-79 298.5 314 49.7
AUR62033477 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.4e-79 298.5 295 51.2
PGR142G4293 Punica granatum HOM05D003948 ORTHO05D004610 6.4e-79 298.5 335 49.9
Sed0015734 Sechium edule HOM05D003948 ORTHO05D004610 6.4e-79 298.5 291 51.5
SalBow2G2418 Salvia bowleyana HOM05D003948 ORTHO05D004610 8.3e-79 298.1 326 49.4
DCAR_014870 Daucus carota HOM05D003948 ORTHO05D004610 1.1e-78 297.7 332 48.8
Gorai.009G019200 Gossypium raimondii HOM05D003948 ORTHO05D004610 1.1e-78 297.7 333 47.4
Gohir.A05G017900 Gossypium hirsutum HOM05D003948 ORTHO05D004610 1.4e-78 297.4 333 46.8
CDE02G2452 Ceratophyllum demersum HOM05D003948 ORTHO05D004610 1.9e-78 297.0 264 57.2
Gohir.D05G018800 Gossypium hirsutum HOM05D003948 ORTHO05D004610 4.1e-78 295.8 333 47.1
ClCG06G010930 Citrullus lanatus HOM05D003948 ORTHO05D004610 7.1e-78 295.0 321 49.2
SGA_v2.0_scaffold5G02657 Striga asiatica HOM05D003948 ORTHO05D004610 1.2e-77 294.3 337 51.3
MELO3C026644.2 Cucumis melo HOM05D003948 ORTHO05D004610 1.6e-77 293.9 295 50.2
Eucgr.C01133 Eucalyptus grandis HOM05D003948 ORTHO05D004610 3.5e-77 292.7 262 56.1
Hma1.2p1_0018F.1_g012660 Hydrangea macrophylla HOM05D003948 ORTHO05D004610 3.5e-77 292.7 310 52.3
CANSAT11G2309 Cannabis sativa HOM05D003948 ORTHO05D004610 7.8e-77 291.6 341 49.0
EL10Ac8g18617 Beta vulgaris HOM05D003948 ORTHO05D004610 1.3e-76 290.8 341 46.6
Ah.09g225870 Amaranthus hybridus HOM05D003948 ORTHO05D004610 6.6e-76 288.5 329 47.4
Cc06_g08780 Coffea canephora HOM05D003948 ORTHO05D004610 1.2e-74 284.3 309 49.5
Medtr4g114000 Medicago truncatula HOM05D003948 ORTHO05D004610 4.7e-74 282.3 332 45.5
TPR.G10716 Trifolium pratense HOM05D003948 ORTHO05D004610 6.2e-74 282.0 336 45.2
arahy.Tifrunner.gnm1.ann1.T1A9DJ Arachis hypogaea HOM05D003948 ORTHO05D004610 8.1e-74 281.6 331 45.9
arahy.Tifrunner.gnm1.ann1.VXE6AC Arachis hypogaea HOM05D003948 ORTHO05D004610 8.1e-74 281.6 329 46.5
Migut.D01056 Erythranthe guttata HOM05D003948 ORTHO05D004610 8.1e-74 281.6 328 49.4
Lj7A632T42 Lonicera japonica HOM05D003948 ORTHO05D004610 2.4e-73 280.0 290 52.8
Phvul.003G162800 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 1.5e-72 277.3 279 49.1
Psat4g040400 Pisum sativum HOM05D003948 ORTHO05D004610 1.3e-71 274.2 333 42.9
Glyma.05G008200 Glycine max HOM05D003948 ORTHO05D004610 2.9e-71 273.1 330 44.2
Lj4g0000861 Lotus japonicus HOM05D003948 ORTHO05D004610 2.9e-71 273.1 332 44.0
Duzib235G1097 Durio zibethinus HOM05D003948 ORTHO05D004610 3.8e-71 272.7 273 55.3
Glyma.17G116500 Glycine max HOM05D003948 ORTHO05D004610 3.8e-71 272.7 309 46.3
VMungo1215G2012 Vigna mungo HOM05D003948 ORTHO05D004610 6.4e-71 271.9 330 43.9
SEGI_16675 Sequoiadendron giganteum HOM05D003948 ORTHO05D004610 4.2e-70 269.2 295 50.8
SalBow2G0819 Salvia bowleyana HOM05D003948 ORTHO05D004610 6.0e-69 265.4 291 48.5
Ca_21696_v3 Cicer arietinum L. HOM05D003948 ORTHO05D004610 3.9e-68 262.7 331 43.5
Os01g0555200 Oryza sativa ssp. japonica HOM05D003948 ORTHO05D004610 2.4e-65 253.4 282 46.5
PSO170G0552 Papaver somniferum HOM05D003948 ORTHO05D004610 3.4e-64 249.6 284 49.3
Zm00001eb342320 Zea mays HOM05D003948 ORTHO05D004610 3.4e-64 249.6 296 44.9
Nn2g11965 Nelumbo nucifera HOM05D003948 ORTHO05D004610 1.7e-63 247.3 237 53.2
ECA232G2488 Erigeron canadensis HOM05D003948 ORTHO05D004610 4.9e-63 245.7 163 73.6
Mapoly0023s0100 Marchantia polymorpha HOM05D003948 ORTHO05D004610 7.6e-56 221.9 230 51.3
GSVIVG01015502001 Vitis vinifera HOM05D003948 ORTHO05D004610 7.6e-56 221.9 165 63.6
FvH4_6g30270 Fragaria vesca HOM05D003948 ORTHO05D004610 2.4e-54 216.9 237 53.2
Rhsim03G0104000 Rhododendron simsii HOM05D003948 ORTHO05D004610 3.2e-54 216.5 160 67.5
CARHR015960 Cardamine hirsuta HOM05D003948 ORTHO05D004610 1.2e-53 214.5 214 51.4
Gohir.D10G075401 Gossypium hirsutum HOM05D003948 ORTHO05D004610 3.3e-51 206.5 155 69.7
Dinv38099 Davidia involucrata HOM05D003948 ORTHO05D004610 1.8e-49 200.7 292 43.8
Atru.chr1.3072 Acer truncatum HOM05D003948 ORTHO05D004610 6.9e-49 198.7 229 50.2
MD02G1035500 Malus domestica HOM05D003948 ORTHO05D004610 1.5e-48 197.6 238 45.4
AUR62011108 Chenopodium quinoa HOM05D003948 ORTHO05D004610 6.0e-45 185.7 233 43.3
Phvul.005G175301 Phaseolus vulgaris HOM05D003948 ORTHO05D004610 5.7e-43 179.1 210 48.1
Sc18g0000700 Simmondsia chinensis HOM05D003948 ORTHO05D004610 1.9e-38 164.1 234 41.9
SMO271G0179 Selaginella moellendorffii HOM05D003948 ORTHO05D004610 9.7e-35 151.8 262 36.3
Lj5A69T36 Lonicera japonica HOM05D003948 ORTHO05D004610 4.8e-34 149.4 112 70.5
CARHR015950 Cardamine hirsuta HOM05D003948 ORTHO05D004610 2.9e-31 140.2 89 73.0
Peaxi162Scf00274g00858 Petunia axillaris HOM05D003948 ORTHO05D004610 2.3e-28 130.6 83 81.9
Lj1g0003343 Lotus japonicus HOM05D003948 ORTHO05D004610 7.7e-24 115.5 88 62.5
FAN26G3201 Fragaria x ananassa HOM05D003948 ORTHO05D004610 5.0e-23 112.8 74 70.3
DCAR_000573 Daucus carota HOM05D003948 ORTHO05D004610 4.2e-22 109.8 84 65.5
Oeu041220.1 Olea europaea HOM05D003948 ORTHO05D004610 2.1e-21 107.5 84 59.5
Psat0s806g0040 Pisum sativum HOM05D003948 ORTHO05D004610 3.3e-19 100.1 123 38.2
ClCG09G013940 Citrullus lanatus HOM05D003948 ORTHO05D004610 4.8e-10 69.7 54 64.8


User provided reference genes

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