Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g116450.1 Solanum lycopersicum HOM05D008051 ORTHO05D009905 3.0e-76 288.9 201 100.0
PGSC0003DMG401000629 Solanum tuberosum HOM05D008051 ORTHO05D009905 1.7e-50 203.4 145 91.0
CAN.G407.107 Capsicum annuum HOM05D008051 ORTHO05D009905 4.6e-48 195.3 158 82.9
Oeu021430.1 Olea europaea HOM05D008051 ORTHO05D009905 2.5e-30 136.3 149 69.8
DCAR_009646 Daucus carota HOM05D008051 ORTHO05D009905 1.1e-28 131.0 166 62.0
Dinv40787 Davidia involucrata HOM05D002089 ORTHO05D002848 3.2e-25 119.4 136 66.9
MSTRG.4127 Avicennia marina HOM05D008051 ORTHO05D009905 4.6e-24 115.5 126 72.2
Haze_21342 Corylus avellana HOM05D008051 ORTHO05D009905 4.6e-24 115.5 163 61.3
Haze_21340 Corylus avellana HOM05D008051 ORTHO05D009905 1.7e-23 113.6 163 61.3
CSS0002609 Camellia sinensis var. sinensis HOM05D008051 ORTHO05D009905 6.6e-23 111.7 152 60.5
Haze_09724 Corylus avellana HOM05D008051 ORTHO05D009905 2.5e-22 109.8 164 60.4
QL08p007021 Quercus lobata HOM05D008051 ORTHO05D009905 2.5e-22 109.8 154 63.6
SGA_v2.0_scaffold196G40891 Striga asiatica HOM05D008051 ORTHO05D009905 1.2e-21 107.5 114 72.8
MBI18_g27147_MAGBIO Magnolia biondii HOM05D008051 ORTHO05D009905 1.6e-21 107.1 128 68.8
Cfa012978 Carpinus fangiana HOM05D008051 ORTHO05D009905 2.1e-21 106.7 153 60.8
Ah.04g166050 Amaranthus hybridus HOM05D000120 ORTHO05D002159 3.6e-21 105.9 125 72.0
Rhsim06G0068300 Rhododendron simsii HOM05D008051 ORTHO05D009905 3.6e-21 105.9 139 57.6
vmacro21377 Vaccinium macrocarpon HOM05D008051 ORTHO05D009905 4.7e-21 105.5 138 58.0
SGA_v2.0_scaffold196G40892 Striga asiatica HOM05D008051 ORTHO05D009905 1.1e-20 104.4 115 70.4
CANSAT11G0109 Cannabis sativa HOM05D008051 ORTHO05D009905 1.8e-20 103.6 140 62.9
Eucgr.F00712 Eucalyptus grandis HOM05D008051 ORTHO05D009905 1.8e-20 103.6 128 67.2
Cfa020295 Carpinus fangiana HOM05D008051 ORTHO05D009905 2.4e-20 103.2 163 58.9
EL10Ac4g07747 Beta vulgaris HOM05D008051 ORTHO05D009905 3.1e-20 102.8 128 69.5
Potri.001G355700 Populus trichocarpa HOM05D008051 ORTHO05D009905 9.0e-20 101.3 144 61.8
Sabra11G0071300 Salix brachista HOM05D008051 ORTHO05D009905 3.4e-19 99.4 148 59.5
HanXRQChr08g0233561 Helianthus annuus HOM05D008051 ORTHO05D009905 5.8e-19 98.6 131 64.1
Cpa.g.sc12.286 Carica papaya HOM05D008051 ORTHO05D009905 9.9e-19 97.8 108 42.6
Migut.N00262 Erythranthe guttata HOM05D008051 ORTHO05D009905 1.3e-18 97.4 130 66.2
THA.LOC104798770 Tarenaya hassleriana HOM05D012777 ORTHO05D009905 2.2e-18 96.7 120 62.5
Gohir.A01G083500 Gossypium hirsutum HOM05D008051 ORTHO05D009905 8.4e-18 94.7 152 55.9
COL.COLO4_09713 Corchorus olitorius HOM05D008051 ORTHO05D009905 1.1e-17 94.4 142 58.5
Gorai.002G092500 Gossypium raimondii HOM05D008051 ORTHO05D009905 1.1e-17 94.4 149 57.0
Glyma.18G093000 Glycine max HOM05D008051 ORTHO05D009905 3.2e-17 92.8 98 44.9
Gohir.D01G070000 Gossypium hirsutum HOM05D008051 ORTHO05D009905 3.2e-17 92.8 149 57.0
PGR083G0962 Punica granatum HOM05D008051 ORTHO05D009905 4.2e-17 92.4 71 53.5
Lsat_1_v5_gn_5_3180 Lactuca sativa HOM05D008051 ORTHO05D009905 7.1e-17 91.7 162 58.6
ATR0752G075 Amborella trichopoda HOM05D008051 ORTHO05D009905 9.3e-17 91.3 119 66.4
TPR.G33768 Trifolium pratense HOM05D008051 ORTHO05D009905 2.7e-16 89.7 158 57.6
Prupe.4G221300 Prunus persica HOM05D008051 ORTHO05D009905 4.6e-16 89.0 139 59.0
Phvul.006G046600 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 6.0e-16 88.6 101 41.6
CiPaw.11G193500 Carya illinoinensis HOM05D008051 ORTHO05D009905 7.8e-16 88.2 135 55.6
Ciclev10010548m.g Citrus clementina HOM05D008051 ORTHO05D009905 1.0e-15 87.8 143 58.0
Thecc.07G029800 Theobroma cacao HOM05D008051 ORTHO05D009905 3.0e-15 86.3 113 67.3
VMungo0540G2374 Vigna mungo HOM05D008051 ORTHO05D009905 6.6e-15 85.1 74 47.3
Duzib213G0687 Durio zibethinus HOM05D008051 ORTHO05D009905 1.1e-14 84.3 149 56.4
MD11G1211300 Malus domestica HOM05D008051 ORTHO05D009905 1.5e-14 84.0 106 44.3
TWI39G0594 Tripterygium wilfordii HOM05D008051 ORTHO05D009905 2.5e-14 83.2 114 65.8
Medtr7g025060 Medicago truncatula HOM05D008051 ORTHO05D009905 1.3e-13 80.9 93 39.8
RcHm_v2.0_Chr5g0041151 Rosa chinensis HOM05D008051 ORTHO05D009905 2.8e-13 79.7 162 53.7
Sabra11G0072200 Salix brachista HOM05D008051 ORTHO05D009905 2.8e-13 79.7 86 45.3
Manes.15G067600 Manihot esculenta HOM05D008051 ORTHO05D009905 3.6e-13 79.3 124 34.7
Medtr7g074340 Medicago truncatula HOM05D008051 ORTHO05D009905 3.6e-13 79.3 100 40.0
Medtr7g074350 Medicago truncatula HOM05D008051 ORTHO05D009905 3.6e-13 79.3 100 40.0
Medtr7g074360 Medicago truncatula HOM05D008051 ORTHO05D009905 4.8e-13 79.0 99 40.4
Medtr8g442670 Medicago truncatula HOM05D008051 ORTHO05D009905 6.2e-13 78.6 92 41.3
Psat2g012240 Pisum sativum HOM05D008051 ORTHO05D009905 8.1e-13 78.2 48 56.2
Nn7g36860 Nelumbo nucifera HOM05D008051 ORTHO05D009905 1.8e-12 77.0 86 41.9
TPR.G24073 Trifolium pratense HOM05D008051 ORTHO05D009905 1.8e-12 77.0 150 46.7
Medtr5g063040 Medicago truncatula HOM05D008051 ORTHO05D009905 5.3e-12 75.5 98 36.7
arahy.Tifrunner.gnm1.ann1.QA2XZ5 Arachis hypogaea HOM05D008051 ORTHO05D009905 1.2e-11 74.3 53 50.9
Thhalv10012178m.g Eutrema salsugineum HOM05D012777 ORTHO05D009905 1.2e-11 74.3 98 40.8
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 2.0e-11 73.6 77 45.5
Nn1g07253 Nelumbo nucifera HOM05D008051 ORTHO05D009905 3.4e-11 72.8 90 42.2
Glyma.02G292700 Glycine max HOM05D008051 ORTHO05D009905 4.5e-11 72.4 151 51.7
Lalb_Chr15g0081481 Lupinus albus HOM05D008051 ORTHO05D009905 5.8e-11 72.0 93 39.8
Lalb_Chr04g0248291 Lupinus albus HOM05D008051 ORTHO05D009905 1.7e-10 70.5 94 38.3
TPR.G1175 Trifolium pratense HOM05D008051 ORTHO05D009905 2.2e-10 70.1 66 50.0
Glyma.14G021900 Glycine max HOM05D008051 ORTHO05D009905 3.8e-10 69.3 150 52.7
Lalb_Chr17g0348611 Lupinus albus HOM05D008051 ORTHO05D009905 1.1e-09 67.8 100 34.0
Phvul.008G269500 Phaseolus vulgaris HOM05D008051 ORTHO05D009905 1.9e-09 67.0 94 35.1
Medtr5g093370 Medicago truncatula HOM05D008051 ORTHO05D009905 7.1e-09 65.1 90 32.2
LjContig00272g0004425 Lotus japonicus HOM05D008051 ORTHO05D009905 2.1e-08 63.5 100 36.0
Cpa.g.sc12.259 Carica papaya HOM05D008051 ORTHO05D009905 2.7e-08 63.2 67 49.3
BcaC08g43242 Brassica carinata HOM05D012777 ORTHO05D009905 3.5e-08 62.8 158 44.9
AT1G50650 Arabidopsis thaliana HOM05D012777 ORTHO05D009905 4.6e-08 62.4 97 37.1
Medtr5g093340 Medicago truncatula HOM05D008051 ORTHO05D009905 6.0e-08 62.0 90 31.1
AL1G58320 Arabidopsis lyrata HOM05D012777 ORTHO05D009905 1.3e-07 60.8 141 49.6
C06p05910 Brassica napus HOM05D012777 ORTHO05D009905 1.3e-07 60.8 163 43.6
A06p02970 Brassica napus HOM05D012777 ORTHO05D009905 2.3e-07 60.1 163 43.6
BraA06t23503Z Brassica rapa HOM05D012777 ORTHO05D009905 2.3e-07 60.1 163 43.6
Carub.0001s3969 Capsella rubella HOM05D012777 ORTHO05D009905 3.0e-07 59.7 174 45.4
CARHR040700 Cardamine hirsuta HOM05D012777 ORTHO05D009905 3.0e-07 59.7 101 36.6
BolC6t35704H Brassica oleracea HOM05D012777 ORTHO05D009905 3.9e-07 59.3 163 43.6
TPR.G1196 Trifolium pratense HOM05D008051 ORTHO05D009905 6.7e-07 58.5 91 35.2
Medtr8g442580 Medicago truncatula HOM05D008051 ORTHO05D009905 1.1e-06 57.8 60 40.0
Aa31LG5G12090 Aethionema arabicum HOM05D002991 ORTHO05D003480 7.4e-06 55.1 48 50.0


User provided reference genes

Program Settings