Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g114430.1 Solanum lycopersicum HOM05D007960 ORTHO05D010026 1.7e-60 235.7 110 100.0
Sopen03g033530 Solanum pennellii HOM05D007960 ORTHO05D010026 2.8e-52 208.4 110 90.9
PGSC0003DMG400041876 Solanum tuberosum HOM05D007960 ORTHO05D010026 7.3e-48 193.7 110 83.6
Nitab4.5_0000646g0060 Nicotiana tabacum HOM05D007960 ORTHO05D010026 1.5e-37 159.5 119 68.9
Nitab4.5_0004342g0110 Nicotiana tabacum HOM05D007960 ORTHO05D010026 2.2e-36 155.6 120 68.3
Peaxi162Scf00017g03010 Petunia axillaris HOM05D007960 ORTHO05D001491 7.0e-35 150.6 103 69.9
Cc04_g07760 Coffea canephora HOM05D007960 ORTHO05D010026 5.4e-19 97.8 118 48.3
Hma1.2p1_0340F.1_g130110 Hydrangea macrophylla HOM05D007960 ORTHO05D010026 2.1e-18 95.9 120 49.2
Nn3g17652 Nelumbo nucifera HOM05D007960 ORTHO05D010026 3.0e-17 92.0 109 50.5
Medtr2g056070 Medicago truncatula HOM05D007960 ORTHO05D010026 2.5e-16 89.0 92 54.3
Psat1g027680 Pisum sativum HOM05D007960 ORTHO05D010026 3.3e-16 88.6 90 52.2
Haze_18568 Corylus avellana HOM05D007960 ORTHO05D010026 1.2e-15 86.7 79 60.8
Haze_18570 Corylus avellana HOM05D007960 ORTHO05D010026 1.2e-15 86.7 79 60.8
TAR371G0138 Trochodendron aralioides HOM05D007960 ORTHO05D010026 1.2e-15 86.7 86 52.3
QL10p022177 Quercus lobata HOM05D007960 ORTHO05D010026 2.1e-15 85.9 86 57.0
Dinv38606 Davidia involucrata HOM05D000227 ORTHO05D001491 8.1e-15 84.0 73 57.5
Lsat_1_v5_gn_1_15660 Lactuca sativa HOM05D007960 ORTHO05D010026 3.4e-13 78.6 112 45.5
CiPaw.15G122900 Carya illinoinensis HOM05D007960 ORTHO05D010026 4.4e-13 78.2 117 41.0
FAN18G0932 Fragaria x ananassa HOM05D000227 ORTHO05D001491 4.4e-13 78.2 93 50.5
Ah.11g047280 Amaranthus hybridus HOM05D007960 ORTHO05D010026 5.8e-13 77.8 100 44.0
Lj1g0016835 Lotus japonicus HOM05D007960 ORTHO05D010026 7.6e-13 77.4 67 58.2
Atru.chr9.701 Acer truncatum HOM05D007960 ORTHO05D010026 1.3e-12 76.6 98 49.0
Glyma.17G123900 Glycine max HOM05D007960 ORTHO05D010026 1.7e-12 76.3 73 56.2
TPR.G31006 Trifolium pratense HOM05D007960 ORTHO05D010026 1.7e-12 76.3 87 50.6
FAN13G1649 Fragaria x ananassa HOM05D000227 ORTHO05D001491 2.9e-12 75.5 93 48.4
Phvul.003G179700 Phaseolus vulgaris HOM05D007960 ORTHO05D010026 2.9e-12 75.5 80 48.8
Cfa019847 Carpinus fangiana HOM05D007960 ORTHO05D010026 3.8e-12 75.1 78 57.7
ECA247G3950 Erigeron canadensis HOM05D007960 ORTHO05D010026 4.9e-12 74.7 109 44.0
Lalb_Chr13g0302531 Lupinus albus HOM05D007960 ORTHO05D010026 6.4e-12 74.3 57 59.6
Thecc.03G114600 Theobroma cacao HOM05D007960 ORTHO05D010026 6.4e-12 74.3 122 39.3
Ciclev10024471m.g Citrus clementina HOM05D007960 ORTHO05D010026 8.4e-12 73.9 99 46.5
VMungo1215G0525 Vigna mungo HOM05D007960 ORTHO05D010026 8.4e-12 73.9 75 54.7
Sc04g0003840 Simmondsia chinensis HOM05D007960 ORTHO05D010026 1.4e-11 73.2 107 45.8
RcHm_v2.0_Chr7g0184281 Rosa chinensis HOM05D007960 ORTHO05D010026 1.9e-11 72.8 95 47.4
Sc04g0003850 Simmondsia chinensis HOM05D007960 ORTHO05D010026 5.4e-11 71.2 107 44.9
MD14G1219300 Malus domestica HOM05D007960 ORTHO05D010026 4.6e-10 68.2 67 55.2
Manes.01G022400 Manihot esculenta HOM05D007960 ORTHO05D010026 4.6e-10 68.2 74 48.6
Cpa.g.sc13.82 Carica papaya HOM05D007960 ORTHO05D010026 6.0e-10 67.8 80 52.5
Gohir.A03G074200 Gossypium hirsutum HOM05D007960 ORTHO05D010026 6.0e-10 67.8 69 53.6
Aqoxy3G03839 Aquilegia oxysepala HOM05D007960 ORTHO05D010026 7.8e-10 67.4 108 45.4
Lalb_Chr12g0197501 Lupinus albus HOM05D007960 ORTHO05D010026 1.0e-09 67.0 53 67.9
THA.LOC104812118 Tarenaya hassleriana HOM05D007960 ORTHO05D010026 1.3e-09 66.6 98 45.9
AL2G33950 Arabidopsis lyrata HOM05D007960 ORTHO05D010026 1.7e-09 66.2 109 43.1
BcaC08g46805 Brassica carinata HOM05D007960 ORTHO05D010026 2.3e-09 65.9 93 47.3
BolC6t39852H Brassica oleracea HOM05D007960 ORTHO05D010026 2.3e-09 65.9 93 47.3
Glyma.05G015600 Glycine max HOM05D007960 ORTHO05D010026 3.0e-09 65.5 71 50.7
Gohir.D03G100500 Gossypium hirsutum HOM05D007960 ORTHO05D010026 3.0e-09 65.5 69 53.6
Gorai.003G106000 Gossypium raimondii HOM05D007960 ORTHO05D010026 3.0e-09 65.5 69 53.6
Sp5g29280 Schrenkiella parvula HOM05D007960 ORTHO05D010026 3.9e-09 65.1 134 38.8
A07p39920 Brassica napus HOM05D007960 ORTHO05D010026 6.6e-09 64.3 107 43.0
BraA07t31538Z Brassica rapa HOM05D007960 ORTHO05D010026 6.6e-09 64.3 107 43.0
Prupe.5G214000 Prunus persica HOM05D007960 ORTHO05D010026 6.6e-09 64.3 98 43.9
Sc04g0003950 Simmondsia chinensis HOM05D007960 ORTHO05D010026 6.6e-09 64.3 107 43.9
C06p48150 Brassica napus HOM05D007960 ORTHO05D010026 8.7e-09 63.9 106 41.5
BcaC08g46834 Brassica carinata HOM05D007960 ORTHO05D010026 1.1e-08 63.5 107 43.0
Ca_02635_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 1.5e-08 63.2 59 55.9
Ca_30215_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 1.5e-08 63.2 59 55.9
AT1G74055 Arabidopsis thaliana HOM05D007960 ORTHO05D010026 2.5e-08 62.4 113 41.6
Carub.0002s2086 Capsella rubella HOM05D007960 ORTHO05D010026 2.5e-08 62.4 80 47.5
Rhsim11G0054500 Rhododendron simsii HOM05D007960 ORTHO05D010026 2.5e-08 62.4 82 51.2
Aa31LG4G4360 Aethionema arabicum HOM05D007960 ORTHO05D010026 3.3e-08 62.0 112 38.4
Thhalv10019432m.g Eutrema salsugineum HOM05D007960 ORTHO05D010026 3.3e-08 62.0 116 41.4
EL10Ac5g11226 Beta vulgaris HOM05D007960 ORTHO05D010026 4.3e-08 61.6 98 37.8
CARHR067210 Cardamine hirsuta HOM05D007960 ORTHO05D010026 4.3e-08 61.6 111 36.9
Sed0018526 Sechium edule HOM05D007960 ORTHO05D010026 1.3e-07 60.1 44 68.2
PSO782G5681 Papaver somniferum HOM05D007960 ORTHO05D010026 3.6e-07 58.5 98 38.8
PSO063G1775 Papaver somniferum HOM05D007960 ORTHO05D010026 6.2e-07 57.8 82 42.7
Rhsim08G0149000 Rhododendron simsii HOM05D007960 ORTHO05D010026 8.1e-07 57.4 82 48.8
Actinidia16062 Actinidia chinensis HOM05D000227 ORTHO05D001491 1.4e-06 56.6 68 50.0
ATR0730G198 Amborella trichopoda HOM05D007960 ORTHO05D010026 1.8e-06 56.2 82 46.3
ClCG04G011400 Citrullus lanatus HOM05D007960 ORTHO05D010026 1.8e-06 56.2 53 52.8
PGR044G2003 Punica granatum HOM05D007960 ORTHO05D010026 5.3e-06 54.7 57 50.9
ATR0730G210 Amborella trichopoda HOM05D022024 ORTHO05D009245 6.9e-06 54.3 51 51.0


User provided reference genes

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