Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 9.4e-254 879.8 471 100.0
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 1.2e-227 793.1 471 91.9
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 3.8e-186 655.2 525 72.8
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 5.5e-177 624.8 529 68.4
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.1e-164 582.0 511 66.7
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 7.7e-155 551.2 519 61.3
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.0e-154 550.8 535 62.1
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 3.8e-154 548.9 534 61.4
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 5.0e-154 548.5 535 62.4
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.1e-153 547.4 535 62.2
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.3e-148 528.5 530 61.5
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 8.0e-128 461.5 534 53.2
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 9.5e-121 438.0 525 52.4
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 4.7e-112 409.1 513 49.7
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 2.0e-110 403.7 522 50.2
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 7.5e-110 401.7 485 54.0
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 8.3e-109 398.3 518 50.4
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.9e-108 397.1 553 47.7
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 7.0e-108 395.2 495 51.1
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 1.6e-107 394.0 508 52.2
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 6.0e-107 392.1 521 48.6
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 6.6e-106 388.7 537 49.5
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 1.6e-104 384.0 516 50.0
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 3.6e-104 382.9 500 49.8
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 7.5e-102 375.2 500 49.4
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 9.8e-102 374.8 520 49.2
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.2e-101 373.6 519 47.4
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 8.3e-101 371.7 521 48.6
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.1e-100 371.3 513 47.8
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.4e-100 369.0 519 46.4
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 1.2e-99 367.9 512 48.8
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 4.6e-99 365.9 512 48.2
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.0e-98 364.8 513 47.2
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 1.3e-98 364.4 513 47.0
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.7e-98 364.0 517 48.2
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.3e-98 363.6 509 47.0
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 1.1e-97 361.3 522 46.9
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.1e-97 361.3 513 46.6
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 1.5e-97 360.9 524 47.3
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 3.3e-97 359.8 532 46.8
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.6e-96 356.3 512 48.6
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 3.6e-96 356.3 525 47.6
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 4.7e-96 355.9 489 47.6
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 6.2e-96 355.5 566 44.9
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.4e-95 354.4 507 47.1
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.4e-95 354.4 513 48.0
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.8e-95 354.0 510 48.0
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 3.1e-95 353.2 549 45.2
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 6.8e-95 352.1 509 47.5
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 6.8e-95 352.1 513 47.2
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 1.5e-94 350.9 518 47.1
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 2.0e-94 350.5 525 46.1
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.7e-93 347.4 492 48.4
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 2.9e-93 346.7 534 46.3
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 5.4e-92 342.4 483 50.5
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 7.1e-92 342.0 533 45.2
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 1.6e-91 340.9 490 49.0
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 6.0e-91 339.0 506 46.6
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 1.3e-90 337.8 478 47.3
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 2.3e-90 337.0 523 46.5
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.5e-89 334.3 457 50.5
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 1.5e-89 334.3 502 45.8
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 3.3e-89 333.2 621 41.5
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 3.3e-89 333.2 533 45.6
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 3.3e-89 333.2 516 45.0
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 7.3e-89 332.0 468 47.4
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 5.2e-87 325.9 495 45.1
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 3.4e-86 323.2 449 48.3
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 9.9e-86 321.6 487 45.2
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 2.2e-85 320.5 512 42.8
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 1.1e-84 318.2 479 43.4
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 1.4e-84 317.8 521 43.0
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 2.7e-83 313.5 482 43.2
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 3.5e-83 313.2 493 46.0
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 4.6e-83 312.8 489 42.1
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.3e-82 311.2 481 45.3
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 3.0e-82 310.1 545 42.9
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 3.9e-82 309.7 507 42.0
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 6.6e-82 308.9 521 43.2
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.1e-81 308.1 508 42.5
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 2.5e-81 307.0 473 45.5
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 7.3e-81 305.4 456 45.4
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.1e-80 303.9 513 42.3
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 2.8e-80 303.5 537 40.6
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 8.1e-80 302.0 494 43.9
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 2.4e-79 300.4 508 43.1
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 6.9e-79 298.9 494 43.7
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.2e-78 298.1 496 42.3
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.2e-78 298.1 505 41.4
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 2.6e-78 297.0 508 40.4
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 2.6e-78 297.0 482 42.5
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 2.6e-78 297.0 523 43.6
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.3e-77 294.7 521 40.5
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 1.7e-77 294.3 517 41.6
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 2.2e-77 293.9 470 42.1
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 8.4e-77 292.0 489 42.3
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 8.4e-77 292.0 499 43.3
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 1.4e-76 291.2 508 40.9
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 1.4e-76 291.2 498 41.6
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 1.9e-76 290.8 548 42.9
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 2.4e-76 290.4 510 40.8
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 3.2e-76 290.0 508 40.7
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 9.3e-76 288.5 527 39.5
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.6e-75 287.7 529 39.5
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 3.5e-75 286.6 513 39.6
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 3.5e-75 286.6 476 44.1
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 7.8e-75 285.4 523 40.7
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 1.3e-74 284.6 551 39.2
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.5e-73 281.2 505 42.0
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 2.5e-73 280.4 483 42.0
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 3.3e-73 280.0 526 40.1
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 9.6e-73 278.5 534 40.1
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 2.8e-72 276.9 508 40.2
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 1.1e-71 275.0 508 40.0
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 1.1e-71 275.0 497 40.2
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.4e-71 274.6 508 39.6
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 2.0e-70 270.8 467 42.2
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 4.2e-68 263.1 467 42.4
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 9.3e-68 261.9 500 40.0
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 9.3e-68 261.9 409 45.2
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 3.5e-67 260.0 497 41.0
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 4.6e-67 259.6 318 53.5
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 7.9e-67 258.8 502 39.4
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 7.4e-65 252.3 374 46.8
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 1.6e-64 251.1 465 42.2
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 2.1e-64 250.8 473 38.7
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 2.4e-63 247.3 519 38.9
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 1.0e-61 241.9 361 44.6
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.3e-61 241.5 356 44.7
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 2.5e-60 237.3 251 58.2
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.5e-60 236.1 434 41.5
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 6.7e-58 229.2 493 37.7
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 1.3e-56 224.9 424 39.2
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 2.4e-55 220.7 441 36.7
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.3e-53 214.9 367 41.4
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 4.6e-51 206.5 395 38.0
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 3.1e-47 193.7 591 32.5
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 1.3e-45 188.3 259 45.9
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 3.8e-45 186.8 391 37.3
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 2.5e-44 184.1 290 44.1
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.2e-43 181.8 119 90.8
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 3.0e-42 177.2 385 34.5
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 1.5e-41 174.9 431 35.7
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 9.7e-41 172.2 171 58.5
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 2.8e-40 170.6 450 34.0
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.1e-39 168.7 370 35.4
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.2e-38 165.2 381 33.9
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.3e-37 161.8 379 34.3
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.1e-36 158.7 379 33.5
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.2e-36 157.1 123 70.7
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 7.9e-35 152.5 363 35.8
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.0e-33 147.9 481 31.4
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 3.3e-33 147.1 196 50.5
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 1.0e-29 135.6 465 30.3
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 6.5e-29 132.9 209 45.5
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.9e-28 131.3 454 31.1
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 4.2e-28 130.2 224 39.3
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 1.6e-27 128.3 223 40.8
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.4e-26 125.2 164 50.6
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.0e-25 121.3 227 37.9
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 8.2e-24 115.9 211 39.8
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.1e-23 115.5 163 43.6
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 7.7e-22 109.4 145 46.2
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 3.2e-20 104.0 127 52.0
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 5.5e-20 103.2 342 29.2
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 4.4e-17 93.6 148 43.2
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 9.8e-17 92.4 106 50.9
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 3.1e-15 87.4 91 53.8
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 4.5e-14 83.6 197 39.1
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 1.6e-11 75.1 122 41.0
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 1.5e-09 68.6 73 52.1
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 2.8e-08 64.3 64 50.0
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 8.3e-08 62.8 110 41.8
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 5.4e-07 60.1 59 52.5
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 9.1e-07 59.3 116 41.4


User provided reference genes

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