Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 8.8e-119 430.3 211 100.0
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 6.1e-112 407.5 213 96.2
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.6e-104 382.9 214 90.7
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 5.1e-74 281.6 213 70.9
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.4e-68 262.7 170 77.6
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 5.4e-68 261.5 213 65.7
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 7.9e-67 257.7 213 65.3
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.9e-53 212.6 178 62.9
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.1e-52 210.7 171 63.7
Nitab4.5_0001334g0100 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.2e-40 169.9 181 55.2
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 8.5e-37 157.9 172 48.3
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 3.6e-35 152.5 211 40.8
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 1.4e-34 150.6 191 42.4
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 3.9e-34 149.1 171 48.0
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 3.9e-34 149.1 166 48.2
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 1.1e-33 147.5 210 40.5
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 4.3e-33 145.6 192 43.2
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 4.3e-33 145.6 192 43.2
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 9.7e-33 144.4 212 41.0
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 1.1e-31 141.0 188 41.0
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.4e-31 140.6 192 41.7
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 2.4e-31 139.8 180 43.3
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 6.9e-31 138.3 195 40.5
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 5.9e-30 135.2 200 40.5
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 5.9e-30 135.2 165 43.6
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 1.0e-29 134.4 174 42.0
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 2.2e-29 133.3 159 40.3
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 5.0e-29 132.1 171 41.5
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 5.0e-29 132.1 207 39.1
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 6.5e-29 131.7 173 39.3
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.1e-28 131.0 191 41.4
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 3.2e-28 129.4 211 36.5
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 5.5e-28 128.6 186 40.3
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.6e-27 127.1 176 38.6
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 1.4e-26 124.0 168 37.5
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 1.8e-26 123.6 192 38.5
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.8e-26 123.6 150 44.7
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.8e-26 123.6 164 40.2
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 2.3e-26 123.2 218 35.8
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 3.0e-26 122.9 190 37.4
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 1.1e-25 120.9 187 36.9
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 1.5e-25 120.6 172 40.1
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 2.0e-25 120.2 166 42.8
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 5.7e-25 118.6 157 42.0
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 5.7e-25 118.6 201 35.3
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 7.4e-25 118.2 162 40.1
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 2.2e-24 116.7 153 41.2
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 2.2e-24 116.7 166 39.8
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 3.7e-24 115.9 177 40.7
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 4.8e-24 115.5 174 39.7
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 6.3e-24 115.2 191 36.1
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 8.2e-24 114.8 167 38.3
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 8.2e-24 114.8 225 35.6
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 8.2e-24 114.8 159 39.6
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.1e-23 114.4 167 38.9
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 1.4e-23 114.0 166 39.2
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 1.8e-23 113.6 180 38.3
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.8e-23 113.6 153 41.2
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 1.8e-23 113.6 176 35.2
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 2.4e-23 113.2 167 38.3
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 4.1e-23 112.5 175 38.9
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 4.1e-23 112.5 186 36.0
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 5.3e-23 112.1 162 37.7
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 5.3e-23 112.1 170 38.2
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 5.3e-23 112.1 165 37.6
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 5.3e-23 112.1 223 36.8
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 7.0e-23 111.7 223 36.8
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.2e-22 110.9 179 35.2
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 1.2e-22 110.9 165 40.6
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.2e-22 110.9 165 40.6
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.2e-22 110.9 153 40.5
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.2e-22 110.9 153 40.5
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 1.2e-22 110.9 172 37.2
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 1.5e-22 110.5 160 37.5
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 1.5e-22 110.5 149 39.6
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 1.5e-22 110.5 149 39.6
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 1.5e-22 110.5 187 35.8
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 1.5e-22 110.5 177 36.7
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 2.0e-22 110.2 153 39.2
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 2.6e-22 109.8 162 40.1
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 2.6e-22 109.8 170 37.1
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 3.5e-22 109.4 182 37.9
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 3.5e-22 109.4 184 36.4
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 4.5e-22 109.0 162 38.9
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 4.5e-22 109.0 166 38.0
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 4.5e-22 109.0 165 40.6
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 4.5e-22 109.0 159 37.1
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 5.9e-22 108.6 166 36.7
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 7.7e-22 108.2 153 39.2
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 7.7e-22 108.2 191 35.1
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.0e-21 107.8 172 37.8
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.0e-21 107.8 189 34.9
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 1.0e-21 107.8 164 39.6
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.3e-21 107.5 161 39.8
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 1.3e-21 107.5 175 37.7
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.7e-21 107.1 162 39.5
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.2e-21 106.7 179 35.8
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 2.2e-21 106.7 165 37.6
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 2.2e-21 106.7 159 38.4
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 2.9e-21 106.3 196 35.7
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 3.8e-21 105.9 163 36.2
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 5.0e-21 105.5 172 36.6
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 6.5e-21 105.1 146 37.7
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 6.5e-21 105.1 164 36.6
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 6.5e-21 105.1 125 44.8
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 6.5e-21 105.1 161 37.9
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 1.5e-20 104.0 200 32.5
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.9e-20 103.6 167 37.1
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 2.5e-20 103.2 157 36.3
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 2.5e-20 103.2 153 39.9
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 3.2e-20 102.8 169 37.9
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 3.2e-20 102.8 182 34.1
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 3.2e-20 102.8 211 36.0
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 4.2e-20 102.4 137 40.9
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 4.2e-20 102.4 166 37.3
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 4.2e-20 102.4 166 37.3
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 5.5e-20 102.1 166 36.7
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 7.2e-20 101.7 187 31.6
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 9.4e-20 101.3 181 33.1
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 9.4e-20 101.3 181 33.1
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 9.4e-20 101.3 174 36.2
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 1.2e-19 100.9 173 34.1
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.2e-19 100.9 166 37.3
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 1.6e-19 100.5 169 37.3
AL3G30540 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 1.6e-19 100.5 180 35.0
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.6e-19 100.5 152 36.2
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 2.7e-19 99.8 176 33.5
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 2.7e-19 99.8 176 35.8
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 3.6e-19 99.4 157 35.7
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 1.0e-18 97.8 159 37.7
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 1.0e-18 97.8 158 34.8
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 1.0e-18 97.8 158 34.8
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 1.0e-18 97.8 133 42.1
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 1.4e-18 97.4 171 36.3
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 1.4e-18 97.4 171 36.3
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 1.8e-18 97.1 161 36.0
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 1.8e-18 97.1 161 36.0
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 1.8e-18 97.1 161 36.0
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 2.3e-18 96.7 156 35.9
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 2.3e-18 96.7 210 32.9
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 3.0e-18 96.3 160 35.0
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 5.2e-18 95.5 133 41.4
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 6.7e-18 95.1 178 33.7
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 8.8e-18 94.7 179 34.1
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 8.8e-18 94.7 159 35.2
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 8.8e-18 94.7 155 33.5
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 8.8e-18 94.7 192 33.3
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 1.1e-17 94.4 217 30.9
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 1.1e-17 94.4 161 33.5
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 1.5e-17 94.0 163 36.8
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 1.5e-17 94.0 166 33.7
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 1.5e-17 94.0 156 37.8
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 2.0e-17 93.6 174 33.9
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 2.0e-17 93.6 174 33.9
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 2.0e-17 93.6 160 36.9
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 3.3e-17 92.8 182 31.3
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 9.7e-17 91.3 139 41.7
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 1.3e-16 90.9 156 32.1
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 2.8e-16 89.7 162 35.8
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 2.8e-16 89.7 157 33.1
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 3.7e-16 89.4 215 29.8
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 4.8e-16 89.0 164 36.0
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 8.2e-16 88.2 175 33.1
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 1.1e-15 87.8 186 36.6
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 1.4e-15 87.4 157 32.5
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 1.4e-15 87.4 149 34.2
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 1.8e-15 87.0 160 33.1
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 4.1e-15 85.9 173 34.1
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 5.3e-15 85.5 151 32.5
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 5.3e-15 85.5 161 31.1
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 5.3e-15 85.5 156 32.1
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 5.3e-15 85.5 156 32.1
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 1.2e-14 84.3 186 31.7
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 2.6e-14 83.2 165 33.9
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 3.5e-14 82.8 172 33.7
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 3.8e-13 79.3 159 30.2
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 6.5e-13 78.6 130 35.4
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 6.5e-13 78.6 170 32.4
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 2.5e-12 76.6 158 31.0
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 2.5e-12 76.6 151 35.8
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 1.6e-11 73.9 185 31.4
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 4.7e-11 72.4 86 43.0
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 6.1e-11 72.0 81 44.4
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 8.0e-11 71.6 97 37.1
BcaC07g38513 Brassica carinata HOM05D003268 ORTHO05D003719 3.4e-09 66.2 156 28.8
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 1.7e-08 63.9 166 28.9
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 1.2e-06 57.8 94 36.2
SEGI_18442 Sequoiadendron giganteum HOM05D003268 ORTHO05D003719 1.6e-06 57.4 174 28.7
Os05g0277200 Oryza sativa ssp. japonica HOM05D003268 ORTHO05D003719 2.7e-06 56.6 176 27.3


User provided reference genes

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