Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 0.0e+00 2632.4 1342 100.0
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 0.0e+00 2376.7 1346 92.2
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 0.0e+00 2144.8 1254 88.0
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 0.0e+00 2030.0 1346 78.2
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 0.0e+00 1951.4 1350 77.0
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 0.0e+00 1559.3 1050 79.0
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1340.1 1337 54.5
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 0.0e+00 1303.9 1349 53.2
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 0.0e+00 1257.3 1340 51.4
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1250.0 1322 51.5
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1211.1 1340 49.1
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1210.7 1331 50.0
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1206.8 1340 48.7
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 0.0e+00 1201.4 1117 56.0
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 0.0e+00 1186.4 1373 49.6
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1184.9 1339 47.9
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1184.5 1355 48.3
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1181.8 1333 47.9
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1181.0 1334 49.5
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1179.1 1345 49.9
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 0.0e+00 1174.5 1343 49.8
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 0.0e+00 1174.5 1336 49.6
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1168.3 1328 48.0
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1158.7 1339 47.4
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1155.2 1428 45.2
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 0.0e+00 1146.0 1359 47.5
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1137.9 1342 47.0
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 0.0e+00 1130.2 1116 54.3
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1125.5 1338 47.8
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1123.6 1320 46.4
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1122.8 1341 46.5
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1118.2 1329 47.2
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1111.7 1329 46.0
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1107.8 1318 46.6
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1102.0 1310 46.7
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1102.0 1330 45.9
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1101.7 1326 45.3
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1101.3 1347 45.5
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1100.5 1325 45.6
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1099.7 1347 45.6
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 0.0e+00 1099.3 1356 47.1
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 0.0e+00 1096.6 1322 47.2
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1092.8 1324 45.7
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 0.0e+00 1088.6 1319 46.5
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1085.5 1328 45.1
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1080.5 1208 48.5
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 3.7e-311 1072.0 1336 45.0
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 7.0e-310 1067.8 1363 45.5
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 1.4e-305 1053.5 1326 44.6
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 7.4e-304 1047.7 1367 45.2
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 8.2e-303 1044.3 1330 44.5
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 4.1e-302 1042.0 1330 44.7
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 5.3e-302 1041.6 1347 44.6
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 7.2e-299 1031.2 1355 44.1
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 1.2e-298 1030.4 1330 44.3
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 1.2e-298 1030.4 1341 43.9
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 3.5e-293 1012.3 1117 49.2
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 2.1e-290 1003.0 1112 47.9
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 3.6e-290 1002.3 1322 44.0
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 1.5e-288 996.9 1056 49.4
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 9.8e-288 994.2 1352 41.9
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 1.3e-287 993.8 1349 42.6
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 1.1e-286 990.7 1325 43.8
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 1.6e-285 986.9 1226 45.5
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 2.9e-284 982.6 1346 41.5
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 7.2e-283 978.0 1340 41.6
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 2.1e-282 976.5 1358 41.2
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 1.8e-281 973.4 1036 49.1
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 3.7e-279 965.7 1373 40.5
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 2.7e-277 959.5 1334 40.8
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 4.5e-277 958.7 1339 40.6
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 7.3e-275 951.4 1128 46.9
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 1.6e-274 950.3 1339 41.4
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 6.1e-274 948.3 1329 40.9
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 6.1e-274 948.3 1352 40.2
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 6.1e-274 948.3 1329 40.9
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 2.6e-272 943.0 1329 40.2
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 8.6e-268 927.9 1276 41.6
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 3.3e-267 926.0 1340 40.6
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 2.1e-266 923.3 1176 43.8
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 4.4e-256 889.0 946 50.6
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 1.1e-251 874.4 1338 38.7
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 8.9e-249 864.8 756 59.1
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 1.7e-247 860.5 1272 40.7
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 5.2e-241 839.0 1247 40.7
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 1.0e-236 824.7 1266 40.2
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 4.8e-226 789.3 865 49.4
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 6.7e-220 768.8 1052 41.9
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 2.2e-215 753.8 767 53.2
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 3.3e-211 740.0 1115 38.9
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 8.5e-207 725.3 1078 40.4
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 5.7e-203 712.6 1086 41.4
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 6.3e-194 682.6 1007 39.2
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.3e-191 674.9 843 44.6
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 6.3e-186 656.0 357 93.8
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 2.4e-185 654.1 796 44.3
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 4.0e-180 636.7 1394 33.2
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 1.8e-148 531.6 716 43.3
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 1.2e-144 518.8 699 42.2
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 8.6e-143 512.7 509 54.0
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 1.5e-134 485.3 690 41.7
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 6.2e-133 479.9 541 50.8
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 1.7e-130 471.9 545 46.4
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 9.6e-118 429.5 649 38.4
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 3.2e-113 414.5 291 73.5
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 1.7e-98 365.5 511 43.2
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 2.2e-93 348.6 442 47.1
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 1.4e-84 319.3 1301 24.4
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 8.8e-79 300.1 1304 23.7
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.4e-76 292.0 531 35.2
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 4.1e-76 291.2 606 35.1
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.2e-69 268.9 386 38.6
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 2.0e-67 262.3 382 38.0
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 9.4e-65 253.4 392 37.2
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 2.6e-38 165.6 182 47.3
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 2.4e-36 159.1 138 56.5
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 4.6e-35 154.8 140 56.4
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 4.6e-35 154.8 136 58.1
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 8.6e-34 150.6 192 44.3
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 5.6e-33 147.9 129 57.4
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 8.0e-32 144.1 132 58.3
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 1.5e-25 123.2 209 34.4
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 8.9e-23 114.0 115 52.2
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 2.4e-20 105.9 128 44.5
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 2.1e-16 92.8 434 21.0
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 3.6e-16 92.0 117 45.3
Pp3c5_2370 Physcomitrium patens HOM05D005651 ORTHO05D006877 8.4e-13 80.9 292 27.1
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 5.1e-10 71.6 70 50.0
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 5.6e-09 68.2 75 46.7
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 4.0e-07 62.0 65 49.2


User provided reference genes

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