Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g112960.1 Solanum lycopersicum HOM05D008788 ORTHO05D012497 1.3e-146 523.1 276 100.0
Sopen03g032030 Solanum pennellii HOM05D008788 ORTHO05D012497 1.8e-143 512.7 276 97.5
PGSC0003DMG400018146 Solanum tuberosum HOM05D008788 ORTHO05D012497 3.1e-103 379.0 279 73.8
Sopen03g032040 Solanum pennellii HOM05D008788 ORTHO05D012497 1.0e-90 337.4 272 69.1
Solyc03g112970.1 Solanum lycopersicum HOM05D008788 ORTHO05D012497 4.4e-86 322.0 272 66.5
Nitab4.5_0000785g0060 Nicotiana tabacum HOM05D008788 ORTHO05D012497 6.6e-82 308.1 263 66.5
Nitab4.5_0000984g0100 Nicotiana tabacum HOM05D008788 ORTHO05D012497 1.5e-81 307.0 268 65.3
Peaxi162Scf00009g00114 Petunia axillaris HOM05D001734 ORTHO05D003483 1.2e-78 297.4 261 63.2
CAN.G1305.14 Capsicum annuum HOM05D008788 ORTHO05D012497 6.0e-75 285.0 251 61.0
CAN.G1673.12 Capsicum annuum HOM05D008788 ORTHO05D012497 2.7e-67 259.6 228 62.7
Nitab4.5_0000741g0040 Nicotiana tabacum HOM05D008788 ORTHO05D012497 2.7e-43 179.9 249 46.2
CAN.G1305.15 Capsicum annuum HOM05D008788 ORTHO05D012497 5.9e-38 162.2 121 67.8
PGSC0003DMG400018147 Solanum tuberosum HOM05D008788 ORTHO05D012497 1.3e-37 161.0 136 73.5
Peaxi162Scf00267g00131 Petunia axillaris HOM05D008788 ORTHO05D012497 1.7e-37 160.6 278 41.0
Nitab4.5_0000026g0140 Nicotiana tabacum HOM05D008788 ORTHO05D012497 2.8e-32 143.3 238 41.2
Nitab4.5_0000741g0020 Nicotiana tabacum HOM05D008788 ORTHO05D012497 5.5e-28 129.0 226 39.4
Cc04_g17010 Coffea canephora HOM05D008788 ORTHO05D012497 5.3e-23 112.5 284 35.6
Migut.D01837 Erythranthe guttata HOM05D008788 ORTHO05D012497 2.0e-22 110.5 267 33.7
Cc04_g16990 Coffea canephora HOM05D008788 ORTHO05D012497 1.5e-20 104.4 288 32.3
Peaxi162Scf00267g00137 Petunia axillaris HOM05D008788 ORTHO05D012497 1.5e-17 94.4 114 43.9
Oeu060796.1 Olea europaea HOM05D008788 ORTHO05D012497 7.5e-17 92.0 269 32.0
CiPaw.11G042300 Carya illinoinensis HOM05D000036 ORTHO05D009440 9.7e-17 91.7 233 30.9
Cc04_g17040 Coffea canephora HOM05D008788 ORTHO05D017864 3.1e-15 86.7 312 31.7
Manes.14G076700 Manihot esculenta HOM05D000281 ORTHO05D009440 2.0e-14 84.0 214 31.8
Potri.001G108200 Populus trichocarpa HOM05D000281 ORTHO05D009440 4.5e-14 82.8 223 30.5
Sabra01G0081700 Salix brachista HOM05D000281 ORTHO05D009440 4.5e-14 82.8 221 29.4
Potri.003G123500 Populus trichocarpa HOM05D000281 ORTHO05D009440 1.7e-13 80.9 227 30.4
TWI81G0565 Tripterygium wilfordii HOM05D000281 ORTHO05D009440 5.0e-13 79.3 231 27.7
Sabra03G0087100 Salix brachista HOM05D000281 ORTHO05D009440 3.2e-12 76.6 228 31.1
Thecc.09G068800 Theobroma cacao HOM05D000036 ORTHO05D002265 3.2e-12 76.6 238 25.6
MD06G1191000 Malus domestica HOM05D000281 ORTHO05D009440 4.2e-12 76.3 214 29.4
vmacro18768 Vaccinium macrocarpon HOM05D000036 ORTHO05D002265 5.5e-12 75.9 176 30.7
Nitab4.5_0000026g0150 Nicotiana tabacum HOM05D008788 ORTHO05D012497 2.7e-11 73.6 198 31.3
Rhsim08G0244700 Rhododendron simsii HOM05D000036 ORTHO05D002265 2.7e-11 73.6 176 29.5
Actinidia24427 Actinidia chinensis HOM05D000036 ORTHO05D002265 6.8e-10 68.9 225 26.2
Actinidia21837 Actinidia chinensis HOM05D000036 ORTHO05D002265 2.0e-09 67.4 226 23.0
Lj5C112G10 Lonicera japonica HOM05D000036 ORTHO05D009440 4.4e-09 66.2 158 33.5
Peaxi162Scf00712g00610 Petunia axillaris HOM05D008788 ORTHO05D012497 9.8e-09 65.1 217 29.5
Nn8g38513 Nelumbo nucifera HOM05D000036 ORTHO05D009440 1.7e-08 64.3 177 29.4
Sabra03G0043500 Salix brachista HOM05D000036 ORTHO05D002265 1.7e-08 64.3 199 24.6
BcaC08g43560 Brassica carinata HOM05D000036 ORTHO05D002265 2.2e-08 63.9 197 26.9
CSS0042964 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D002265 2.8e-08 63.5 182 28.6
PSO135G1004 Papaver somniferum HOM05D000036 ORTHO05D002265 1.1e-07 61.6 187 23.5
BraA06t23309Z Brassica rapa HOM05D000036 ORTHO05D002265 2.4e-07 60.5 139 27.3
AT1G53840 Arabidopsis thaliana HOM05D000036 ORTHO05D002265 5.4e-07 59.3 186 24.2
BcaB07g33288 Brassica carinata HOM05D000036 ORTHO05D002265 5.4e-07 59.3 139 28.1
BolC6t36033H Brassica oleracea HOM05D000036 ORTHO05D002265 5.4e-07 59.3 193 25.9
MD17G1154400 Malus domestica HOM05D000036 ORTHO05D002265 7.0e-07 58.9 237 24.1
AL1G62550 Arabidopsis lyrata HOM05D000036 ORTHO05D002265 1.6e-06 57.8 139 27.3
Migut.D01839 Erythranthe guttata HOM05D018109 ORTHO05D017864 3.5e-06 56.6 282 26.2
CARHR044170 Cardamine hirsuta HOM05D000036 ORTHO05D002265 5.9e-06 55.8 161 26.1
Cfa003461 Carpinus fangiana HOM05D000036 ORTHO05D000095 5.9e-06 55.8 205 24.9


User provided reference genes

Program Settings